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Search of human proteins with 9945320
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9945320 cyclin L1 [Homo sapiens]
(526 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9945320 cyclin L1 [Homo sapiens] 1053 0.0
gi|88758580 cyclin L2 isoform A [Homo sapiens] 583 e-166
gi|221554516 cyclin L2 isoform C [Homo sapiens] 319 3e-87
gi|221554518 cyclin L2 isoform D [Homo sapiens] 318 8e-87
gi|88758578 cyclin L2 isoform B [Homo sapiens] 318 8e-87
gi|150417989 cyclin K isoform 1 [Homo sapiens] 118 1e-26
gi|38176158 cyclin K isoform 2 [Homo sapiens] 117 3e-26
gi|17978469 cyclin T2 isoform b [Homo sapiens] 100 3e-21
gi|4502629 cyclin T2 isoform a [Homo sapiens] 100 3e-21
gi|17978466 cyclin T1 [Homo sapiens] 97 4e-20
gi|196049382 family with sequence similarity 58, member A isofor... 97 4e-20
gi|196049384 family with sequence similarity 58, member A isofor... 94 2e-19
gi|157502165 family with sequence similarity 58 member B [Homo s... 81 2e-15
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 80 6e-15
gi|61676091 cyclin C isoform a [Homo sapiens] 79 1e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 78 2e-14
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 77 5e-14
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 75 1e-13
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 74 3e-13
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 74 4e-13
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 72 2e-12
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 72 2e-12
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 71 3e-12
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 70 5e-12
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 70 5e-12
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 69 8e-12
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 69 1e-11
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 69 1e-11
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 68 2e-11
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 68 2e-11
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 1053 bits (2722), Expect = 0.0
Identities = 526/526 (100%), Positives = 526/526 (100%)
Query: 1 MASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIP 60
MASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIP
Sbjct: 1 MASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIP 60
Query: 61 EERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSF 120
EERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSF
Sbjct: 61 EERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSF 120
Query: 121 VKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQ 180
VKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQ
Sbjct: 121 VKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQ 180
Query: 181 VIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRF 240
VIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRF
Sbjct: 181 VIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRF 240
Query: 241 QPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLE 300
QPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLE
Sbjct: 241 QPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLE 300
Query: 301 KEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKT 360
KEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKT
Sbjct: 301 KEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKT 360
Query: 361 VKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSG 420
VKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSG
Sbjct: 361 VKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSG 420
Query: 421 TYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRD 480
TYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRD
Sbjct: 421 TYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRD 480
Query: 481 HSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
HSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR
Sbjct: 481 HSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 583 bits (1502), Expect = e-166
Identities = 315/532 (59%), Positives = 392/532 (73%), Gaps = 23/532 (4%)
Query: 2 ASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPE 61
A+ + +AA AA++ AP +GG+ SG+ G+LIGDRLYS V +T+++ L+P+
Sbjct: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQ--------GVLIGDRLYSGVLITLENCLLPD 56
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
++L TPSM GLD +ETDLR++GCELIQAAGILLRLPQVAMATGQVLF RFFY+KSFV
Sbjct: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
KHS E V+MAC++LASKIEEAPRRIRDVINVFH LRQLR K+ P PL+LDQ+Y+N KNQ+
Sbjct: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
Query: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQ 241
IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ LVQT+WNYMNDSLRT+VFVRFQ
Sbjct: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLRTDVFVRFQ 236
Query: 242 PETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLEK 301
PE+IACACIYLAAR L+IPLP RPHWFLLFG TEEEIQEIC++ L+LY RKK + LE
Sbjct: 237 PESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKILQLYARKKVDLTHLEG 296
Query: 302 EVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASK-PSSPREVKAEEKSPISINVKT 360
EVEKRK A++EAK +A+GL P GT L GFSPA K SP+E K + SP+S VK
Sbjct: 297 EVEKRKHAIEEAKAQARGLLPGGTQVLDGTSGFSPAPKLVESPKEGKGSKPSPLS--VKN 354
Query: 361 VKKEPEDRQQA-SKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRS 419
K+ E ++A + SP NG+ K R SRS SR +S +RS SRS +P+R ++ S S
Sbjct: 355 TKRRLEGAKKAKADSPVNGLPKG--RESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTS 412
Query: 420 GTYSSRSRSRSRSHSESPRRHHNHGSPH----LKAKHTRDDLKSSNRHGHKRKKSRSRSQ 475
G S+S+SRSRS S+SP R +P+ ++ D K + R +S SRS+
Sbjct: 413 G--GSKSQSRSRSRSDSPPRQAPRSAPYKGSEIRGSRKSKDCKYPQKPHKSRSRSSSRSR 470
Query: 476 SKSRDHSDAAKKHRHERGHHRD-RRERSRSFERSHKSKHHGGSRSGHGRHRR 526
S+SR+ +D K++ + ++RD RRERSRS+ER+ + + GH RHRR
Sbjct: 471 SRSRERADNPGKYKKKSHYYRDQRRERSRSYERT--GRRYERDHPGHSRHRR 520
>gi|221554516 cyclin L2 isoform C [Homo sapiens]
Length = 236
Score = 319 bits (818), Expect = 3e-87
Identities = 160/231 (69%), Positives = 190/231 (82%), Gaps = 8/231 (3%)
Query: 2 ASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPE 61
A+ + +AA AA++ AP +GG+ SG+ G+LIGDRLYS V +T+++ L+P+
Sbjct: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQ--------GVLIGDRLYSGVLITLENCLLPD 56
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
++L TPSM GLD +ETDLR++GCELIQAAGILLRLPQVAMATGQVLF RFFY+KSFV
Sbjct: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
KHS E V+MAC++LASKIEEAPRRIRDVINVFH LRQLR K+ P PL+LDQ+Y+N KNQ+
Sbjct: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
Query: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSL 232
IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ LVQT+W D L
Sbjct: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
>gi|221554518 cyclin L2 isoform D [Homo sapiens]
Length = 227
Score = 318 bits (815), Expect = 8e-87
Identities = 158/224 (70%), Positives = 188/224 (83%), Gaps = 8/224 (3%)
Query: 2 ASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPE 61
A+ + +AA AA++ AP +GG+ SG+ G+LIGDRLYS V +T+++ L+P+
Sbjct: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQ--------GVLIGDRLYSGVLITLENCLLPD 56
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
++L TPSM GLD +ETDLR++GCELIQAAGILLRLPQVAMATGQVLF RFFY+KSFV
Sbjct: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
KHS E V+MAC++LASKIEEAPRRIRDVINVFH LRQLR K+ P PL+LDQ+Y+N KNQ+
Sbjct: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
Query: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAW 225
IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ LVQT+W
Sbjct: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSW 220
>gi|88758578 cyclin L2 isoform B [Homo sapiens]
Length = 226
Score = 318 bits (815), Expect = 8e-87
Identities = 158/224 (70%), Positives = 188/224 (83%), Gaps = 8/224 (3%)
Query: 2 ASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPE 61
A+ + +AA AA++ AP +GG+ SG+ G+LIGDRLYS V +T+++ L+P+
Sbjct: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQ--------GVLIGDRLYSGVLITLENCLLPD 56
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
++L TPSM GLD +ETDLR++GCELIQAAGILLRLPQVAMATGQVLF RFFY+KSFV
Sbjct: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
KHS E V+MAC++LASKIEEAPRRIRDVINVFH LRQLR K+ P PL+LDQ+Y+N KNQ+
Sbjct: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
Query: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAW 225
IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ LVQT+W
Sbjct: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSW 220
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 118 bits (296), Expect = 1e-26
Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 51/360 (14%)
Query: 48 SEVSLTIDHS----LIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVA 103
S S +DH+ ++ L+ TPS +GLD +E R G I G L L
Sbjct: 11 SVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDT 70
Query: 104 MATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKR 163
+ATG + FHRF+ SF + + C+ LA K+EE P++ +D+I L
Sbjct: 71 LATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLL------ 124
Query: 164 TPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERN--QTLV 221
+ + Q + K +V+ ER +L+ + F + V+HP++ ++ Y + L+ ++N Q LV
Sbjct: 125 --NDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLV 182
Query: 222 QTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPL------PTRPHWFLLF--GT 273
Q AW ++NDSL T + ++++PE IA A +YLA R + + P W+ F
Sbjct: 183 QMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDV 242
Query: 274 TEEEIQEICIETLRLYTRKK------------------PNYELLEKEVEKRKVALQEAKL 315
+ +++IC + L LY++ K P ++ + + + + + ++
Sbjct: 243 PVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQP 302
Query: 316 KAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSP 375
+ K P+ +PSSPR+VK + V P++ +A++ P
Sbjct: 303 QQKDPQQPAQQQQPAQQPKKPSPQPSSPRQVK-----------RAVVVSPKEENKAAEPP 351
>gi|38176158 cyclin K isoform 2 [Homo sapiens]
Length = 354
Score = 117 bits (292), Expect = 3e-26
Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 22/260 (8%)
Query: 48 SEVSLTIDHS----LIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVA 103
S S +DH+ ++ L+ TPS +GLD +E R G I G L L
Sbjct: 11 SVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDT 70
Query: 104 MATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKR 163
+ATG + FHRF+ SF + + C+ LA K+EE P++ +D+I L
Sbjct: 71 LATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLL------ 124
Query: 164 TPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERN--QTLV 221
+ + Q + K +V+ ER +L+ + F + V+HP++ ++ Y + L+ ++N Q LV
Sbjct: 125 --NDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLV 182
Query: 222 QTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPL------PTRPHWFLLF--GT 273
Q AW ++NDSL T + ++++PE IA A +YLA R + + P W+ F
Sbjct: 183 QMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDV 242
Query: 274 TEEEIQEICIETLRLYTRKK 293
+ +++IC + L LY++ K
Sbjct: 243 PVDVLEDICHQILDLYSQGK 262
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 100 bits (250), Expect = 3e-21
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
E+L TPS + G++ E R LIQ G L + Q+ + T V HRF+ SF
Sbjct: 16 EQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFT 75
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQN---YINTK 178
K + I++ + LA+K+EE R++ VI V H P +LD Y+
Sbjct: 76 KFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH------PLEPLLDTKCDAYLQQT 129
Query: 179 NQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVF- 237
+++ E +L+ LGF + ++HPH +V Q++ ++ L QT++ +SL F
Sbjct: 130 QELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFC 187
Query: 238 VRFQPETIACACIYLAAR--ALQIPLPT-RPHWFLLFG--TTEEEIQEICIETLRLYTRK 292
++++P IAC CI+LA + +IP+ T HW+ T E + E+ E L++ K
Sbjct: 188 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI-LEK 246
Query: 293 KPN 295
PN
Sbjct: 247 TPN 249
Score = 33.9 bits (76), Expect = 0.38
Identities = 53/225 (23%), Positives = 81/225 (36%), Gaps = 22/225 (9%)
Query: 291 RKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASK--PSSPREVKA 348
R+K E L+ +V +A Q + +G + A S+ SP P + E
Sbjct: 440 REKRKLETLDLDVRDHYIAAQVEQQHKQGQSQ----AASSSSVTSPIKMKIPIANTEKYM 495
Query: 349 EEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP 408
+K S ++K P + ASK K S R+S +S S S H
Sbjct: 496 ADKKEKSGSLKLRIPIPPTDKSASKEELKMKIKVSSSERHS--SSDEGSGKSKHSSPHIS 553
Query: 409 RRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNH-GSPHLKAKHTRDDLKSSNRHG--- 464
R H + SR H+ S + H+H GS +KH+ D + +
Sbjct: 554 RDHKEKHKEHPS---------SRHHTSSHKHSHSHSGSSSGGSKHSADGIPPTVLRSPVG 604
Query: 465 -HKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERS 508
S S S S+ R H + A + H + + S S S
Sbjct: 605 LSSDGISSSSSSSRKRLHVNDASHNHHSKMSKSSKSSGSSSSSSS 649
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 457 LKSSNRHGHKRK---KSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKH 513
+ SS RH + KS+ S SRDH + K+H R HH + S S H
Sbjct: 529 VSSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPSSR-HHTSSHKHSHS----HSGSS 583
Query: 514 HGGSR 518
GGS+
Sbjct: 584 SGGSK 588
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 100 bits (250), Expect = 3e-21
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
E+L TPS + G++ E R LIQ G L + Q+ + T V HRF+ SF
Sbjct: 16 EQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFT 75
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQN---YINTK 178
K + I++ + LA+K+EE R++ VI V H P +LD Y+
Sbjct: 76 KFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH------PLEPLLDTKCDAYLQQT 129
Query: 179 NQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVF- 237
+++ E +L+ LGF + ++HPH +V Q++ ++ L QT++ +SL F
Sbjct: 130 QELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFC 187
Query: 238 VRFQPETIACACIYLAAR--ALQIPLPT-RPHWFLLFG--TTEEEIQEICIETLRLYTRK 292
++++P IAC CI+LA + +IP+ T HW+ T E + E+ E L++ K
Sbjct: 188 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI-LEK 246
Query: 293 KPN 295
PN
Sbjct: 247 TPN 249
Score = 33.9 bits (76), Expect = 0.38
Identities = 55/232 (23%), Positives = 84/232 (36%), Gaps = 28/232 (12%)
Query: 291 RKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASK--PSSPREVKA 348
R+K E L+ +V +A Q + +G + A S+ SP P + E
Sbjct: 440 REKRKLETLDLDVRDHYIAAQVEQQHKQGQSQ----AASSSSVTSPIKMKIPIANTEKYM 495
Query: 349 EEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP 408
+K S ++K P + ASK K S R+S +S S S H
Sbjct: 496 ADKKEKSGSLKLRIPIPPTDKSASKEELKMKIKVSSSERHS--SSDEGSGKSKHSSPHIS 553
Query: 409 RRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNH-GSPHLKAKHTRDDLKSSNRHGHKR 467
R H + SR H+ S + H+H GS +KH+ D + +
Sbjct: 554 RDHKEKHKEHPS---------SRHHTSSHKHSHSHSGSSSGGSKHSADGIPPTVLRSPVG 604
Query: 468 KKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
S S S S S + H ++ H+ + S SK GG R+
Sbjct: 605 LSSDGISSSSS---SSRKRLHVNDASHNHHSK-------MSKSSKSSGGLRT 646
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 97.1 bits (240), Expect = 4e-20
Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)
Query: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
E+L +PS + G+D E R L+Q G L + Q+ + T V HRF+ +SF
Sbjct: 17 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 76
Query: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
+ VA A + LA+K+EE P+++ VI V H + P + Y+ +
Sbjct: 77 QFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLH---PQESLPDTRSEAYLQQVQDL 133
Query: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVF-VRF 240
+ E +L+ LGF + + HPH +V Q++ ++ L QT++ +SL F +++
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSLHLTTFSLQY 191
Query: 241 QPETIACACIYLAAR--ALQIPLPT-RPHW--FLLFGTTEEEIQEICIETLRLYTRKKPN 295
P +AC CI+LA + +IP+ T HW ++ T E + E+ E L++ K PN
Sbjct: 192 TPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQI-LEKTPN 250
Score = 30.0 bits (66), Expect = 5.4
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 5/135 (3%)
Query: 349 EEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP 408
+ S + + + E +R K+ ++ + ++AS + R + H
Sbjct: 430 DSHSSVILKMPIEGSENPERPFLEKADKTALKMRIPVAGGDKAASSKPEEIKMRIKVHAA 489
Query: 409 RRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHL-KAKHTRDDLKSSNRHGHKR 467
+N+ ++SR H P HH+H + H K H++ + + N+
Sbjct: 490 ADKHNSVEDSV----TKSREHKEKHKTHPSNHHHHHNHHSHKHSHSQLPVGTGNKRPGDP 545
Query: 468 KKSRSRSQSKSRDHS 482
K S S + +S
Sbjct: 546 KHSSQTSNLAHKTYS 560
>gi|196049382 family with sequence similarity 58, member A isoform 1
[Homo sapiens]
Length = 248
Score = 97.1 bits (240), Expect = 4e-20
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 90 IQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDV 149
I AG+ L + + +AT ++H+FF + + ++AM+ I LA K+EE R RD+
Sbjct: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
Query: 150 INVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYL 209
INV + G+ PL LD + ++ +++ E +L+ L F V +HPHK ++ YL
Sbjct: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
Query: 210 QVLECERNQ------TLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT 263
L+ N+ + TAW + DS + +RFQ + IA A +YLA + + +P
Sbjct: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
Query: 264 RPH----WFLLFG--TTEEEIQEICIETLRLYT 290
W+ +F T+ I I + +++YT
Sbjct: 210 EVEAEKPWWQVFNDDLTKPIIDNIVSDLIQIYT 242
>gi|196049384 family with sequence similarity 58, member A isoform 2
[Homo sapiens]
Length = 228
Score = 94.4 bits (233), Expect = 2e-19
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 15/197 (7%)
Query: 90 IQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDV 149
I AG+ L + + +AT ++H+FF + + ++AM+ I LA K+EE R RD+
Sbjct: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
Query: 150 INVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYL 209
INV + G+ PL LD + ++ +++ E +L+ L F V +HPHK ++ YL
Sbjct: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
Query: 210 QVLECERNQ------TLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT 263
L+ N+ + TAW + DS + +RFQ + IA A +YLA + + +P
Sbjct: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
Query: 264 -----RPHWFLLFGTTE 275
+P W + TE
Sbjct: 210 EVEAEKPWWQIYTMDTE 226
>gi|157502165 family with sequence similarity 58 member B [Homo
sapiens]
Length = 252
Score = 81.3 bits (199), Expect = 2e-15
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 16/213 (7%)
Query: 90 IQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDV 149
I AG+ L + + +AT ++ +FF ++AM+ I LA K+EE P D+
Sbjct: 38 IMEAGVKLGMQSIPIATACTIYPKFFCETILDAFDPYLIAMSSIYLAGKVEEQPLWAHDI 97
Query: 150 INVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYL 209
I+V + + PL LD ++ +++ E +L+ L F V +HPHK ++ YL
Sbjct: 98 ISVSNRYFN----PSSEPLGLDSRLWELRDSIVQRELLMLRVLRFQVSFQHPHKYLLYYL 153
Query: 210 ----QVLECE--RNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT 263
L C + + TAW + DS + +RFQ + IA +YLA + + +P
Sbjct: 154 VSLKNWLNCHSWQRTPVAVTAWALLRDSYHGGLCLRFQAQHIAVVVLYLALQVYGVEVPA 213
Query: 264 RPH----WFLLFG--TTEEEIQEICIETLRLYT 290
W+ F T+ I I + +++YT
Sbjct: 214 EVEAEKLWWQAFSDDLTKPIIDTIVSDLIQIYT 246
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 341 SSPREV--KAEEKSPISINVKTVKKEPE---DRQQASKSPYNGVRKDSKRSRN-SRSASR 394
SSPR+ +++ SP + + P DR + S+SPY + RS N +R SR
Sbjct: 381 SSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSR-SRSPYKARDRSRSRSPNKARDCSR 439
Query: 395 SRS--RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNH-GSPHLKAK 451
SRS + R RSRS +P + ++ RSRS +++R RSRS S S R H+ GSP +
Sbjct: 440 SRSPYKARDRSRSRSPNKARDHSRSRS---PNKARDRSRSRSPSKERDHSQLGSPSKERD 496
Query: 452 HTRDDLKSSNRHGHKRKKSRSRSQSKSRDH--SDAAKKHRHERGHHRDRRERSRSFERS- 508
H R S +R+ +SRS SK RDH S + K R R +ER RS RS
Sbjct: 497 HRR-----SRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSP 551
Query: 509 HKSKHHGGSRS 519
+ + H SRS
Sbjct: 552 SEEREHRQSRS 562
Score = 77.4 bits (189), Expect = 3e-14
Identities = 65/214 (30%), Positives = 93/214 (43%), Gaps = 25/214 (11%)
Query: 333 GFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSA 392
G S + P+ R+ + +SP ++ + P + S+S +D RSR+ A
Sbjct: 388 GRSQSGSPNKQRD-HSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKA 446
Query: 393 -SRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSE----SPRRHHNHGSPH 447
RSRSR+ +++R H+ R N R RS SRS S+ R HS+ S R H
Sbjct: 447 RDRSRSRSPNKARDHSRSRSPNKARDRS---RSRSPSKERDHSQLGSPSKERDHRRSRSP 503
Query: 448 LKAKHTRDDLKSSNRHGHKRKKS--------RSRSQSKSRDHSDA-----AKKHRHER-- 492
K + R SS H+R +S +SRS +K RD S + ++HR R
Sbjct: 504 SKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSP 563
Query: 493 GHHRDRRE-RSRSFERSHKSKHHGGSRSGHGRHR 525
RDRR RS S ER + H R R
Sbjct: 564 SKERDRRRWRSPSKERERRQSRSSSEERDHSRSR 597
Score = 73.9 bits (180), Expect = 3e-13
Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 317 AKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPY 376
AK P G P+ S PSS R+VK+ + I K+ P + KS Y
Sbjct: 217 AKCQTPTGIPSKEK----SDNPSPSSSRKVKSYGQMIIPSREKSYS--PTEMSSRVKS-Y 269
Query: 377 NGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSES 436
N S+ +S+S S RSR+ S+ R+H+ R ++ +R+ S R+RSR+R S
Sbjct: 270 NQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHS-----RARSRTRKGILS 324
Query: 437 PRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHR 496
H+ H K K + + R G SR+ S+ +S HS ++ K R RG
Sbjct: 325 QMGRHSQSRSHSKGK--SQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSS 382
Query: 497 DRRERSRSFERS-HKSKHHGGSRS 519
R+E RS S +K + H SRS
Sbjct: 383 PRKESGRSQSGSPNKQRDHSRSRS 406
Score = 70.1 bits (170), Expect = 5e-12
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 35/235 (14%)
Query: 316 KAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKS- 374
K G + G+P + S + P+ R+ ++ +SP ++ + P + S+S
Sbjct: 385 KESGRSQSGSP--NKQRDHSRSRSPNKARD-RSRSRSPYKARDRSRSRSPNKARDCSRSR 441
Query: 375 -PYNGVRKDSKRSRNS---------------RSASRSRSRTRSRSRSHTPRRHYNNRRSR 418
PY + RS N RS SRS S+ R S+ +P + ++RRSR
Sbjct: 442 SPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSR 501
Query: 419 SGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKS 478
S S+ R +S S S R H K + R +S N+ +R +S+SRS S+
Sbjct: 502 S---PSKERQCRQSRSSSKERDHRRSRSPSKERQRRQS-RSPNK---ERDRSQSRSPSEE 554
Query: 479 RDH--SDAAKKHRHER-----GHHRDRRE-RSRSFERSHKSKHHGGSRSGHGRHR 525
R+H S + K R R R+RR+ RS S ER H +SG+ R R
Sbjct: 555 REHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPR 609
Score = 66.2 bits (160), Expect = 7e-11
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 20/215 (9%)
Query: 328 LSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKD----- 382
LS +G S S+ S + + + ++P + P + S S + +D
Sbjct: 323 LSQMGRHSQ-SRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSS 381
Query: 383 SKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHN 442
S R + RS S S ++ R SRS +P + + RSRS ++R RSRS S + R +
Sbjct: 382 SPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRS---PYKARDRSRSRSPNKARDCS 438
Query: 443 HGSPHLKAKHTRDDLKSSNRHGHKRK--------KSRSRSQSKSRDHS---DAAKKHRHE 491
KA+ + H R +SRSRS SK RDHS +K+ H
Sbjct: 439 RSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHR 498
Query: 492 RGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
R + + R S K + H SRS +R
Sbjct: 499 RSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQR 533
Score = 65.1 bits (157), Expect = 2e-10
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 31/232 (13%)
Query: 311 QEAKLKAKGLNPDGTPAL---STLGGFSPASKPSSPREVKAEEKS--PISINVKTVKKEP 365
Q L K P G + S L +K +P + ++EKS P + + VK
Sbjct: 187 QPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYG 246
Query: 366 EDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSR 425
+ + + Y S +SR S +++ TRSR +SH+ R + RRSRSG S+
Sbjct: 247 QMIIPSREKSY------SPTEMSSRVKSYNQASTRSRPQSHSQSR--SPRRSRSG---SQ 295
Query: 426 SRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRD----- 480
R+ SR S S +R+H+ +++ + L RH R S+ +SQ++SR
Sbjct: 296 KRTHSRVRSHSWKRNHSRA----RSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGR 351
Query: 481 ------HSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
+ + H H R ++R R S R + GS + H R
Sbjct: 352 SHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSR 403
Score = 60.8 bits (146), Expect = 3e-09
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 338 SKPSSPREVK--AEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSA--- 392
S+ SP + + + +SP ++ + P + S+ +D +RSR+
Sbjct: 450 SRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQC 509
Query: 393 --SRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 450
SRS S+ R RS +P + R+SRS ++ R RS S SP H +
Sbjct: 510 RQSRSSSKERDHRRSRSPSKERQRRQSRSP-----NKERDRSQSRSPSEEREHRQSRSPS 564
Query: 451 KHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHK 510
K D + +R++ +SRS S+ RDHS + ++ + G+ R R+ S E++H
Sbjct: 565 KER--DRRRWRSPSKERERRQSRSSSEERDHSRSRSPNK-QSGY---SRPRASSKEKAHS 618
Query: 511 SKHHGGSRSGHGRHR 525
H + R
Sbjct: 619 RSRTPSKEGNHSQSR 633
Score = 50.8 bits (120), Expect = 3e-06
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 327 ALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDS--- 383
+L+ G P + P P +K+ + + + N V +P + + SP + S
Sbjct: 13 SLAPSGSSMPTADPKPPASLKSTKSA--TPNRSLVPTKPATSRNSVMSPSSSKSTKSTST 70
Query: 384 KRSRNSRSASRSRSRTRSRSRSHT------------------PRRHYNNRRSRSGTYSSR 425
KR+ ++R +SRSR R+++R+ S RR ++R G SR
Sbjct: 71 KRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSR 130
Query: 426 SRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAA 485
S RS S + +P R HG+ A R +S + G R KS R ++ +R+ SD+
Sbjct: 131 SSKRSPSRASTPGRIRTHGARPGMASRVR--TPTSQQKG-SRGKSYGRPRTSNRERSDSQ 187
Query: 486 KKHRHERGH 494
++ ++ +
Sbjct: 188 PRNLSKKSY 196
Score = 49.7 bits (117), Expect = 7e-06
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 312 EAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQA 371
+A+ +++ +P S LG SP SK R ++ K ++ KE + R+
Sbjct: 469 KARDRSRSRSPSKERDHSQLG--SP-SKERDHRRSRSPSKERQCRQSRSSSKERDHRR-- 523
Query: 372 SKSPYNGVRKDSKRSRNS---RSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYS----- 423
S+SP ++ RS N RS SRS S R +S +P + + RR RS +
Sbjct: 524 SRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQ 583
Query: 424 SRSRSRSRSH--SESPRRHHNHGSPHLKAK---HTRDDLKSSNRHGHKRKKSRSRSQSKS 478
SRS S R H S SP + + P +K H+R ++ ++ G+ S+SR+ SK
Sbjct: 584 SRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRS--RTPSKEGN---HSQSRTSSKE 638
Query: 479 RDHSDA 484
D S +
Sbjct: 639 SDPSQS 644
Score = 43.1 bits (100), Expect = 6e-04
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRK-----DSKRSRNSRSA 392
SK R+ ++ K ++ +E E RQ S S R+ + R SRS+
Sbjct: 528 SKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSS 587
Query: 393 SRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKH 452
S R +RSRS P + R R+ S+ ++ S S +P + NH +K
Sbjct: 588 SEERDHSRSRS----PNKQSGYSRPRAS-----SKEKAHSRSRTPSKEGNHSQSRTSSKE 638
Query: 453 TRDDLKSSNRHGHKRKKSRSRSQSKSRDHS 482
+ D +S+ K+S +R+ S S++ +
Sbjct: 639 S-DPSQSTVPRSPDWKRSPTRTSSLSQNRT 667
Score = 34.3 bits (77), Expect = 0.29
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSAS- 393
S + PS RE + + +SP + + P ++ +S + +D RSR+ S
Sbjct: 546 SQSRSPSEEREHR-QSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSG 604
Query: 394 ----RSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS------------------------R 425
R+ S+ ++ SRS TP + N+ +SR+ + S +
Sbjct: 605 YSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQ 664
Query: 426 SRSRSRSHSESP 437
+R+ S++ S SP
Sbjct: 665 NRTPSKTSSHSP 676
>gi|61676091 cyclin C isoform a [Homo sapiens]
Length = 283
Score = 79.0 bits (193), Expect = 1e-14
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 82 LRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEE 141
L+I +IQA G L+L Q +AT V F RF+ S ++A C+ LASK+EE
Sbjct: 40 LQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99
Query: 142 APRRIRDVINVFHHLRQLRGK----RTPSPLILDQNYINTKNQVIKAERRVLKELGFCVH 197
V + R + +T + + N +++ E +L+ + C+
Sbjct: 100 --------FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLI 151
Query: 198 VKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARAL 257
V HP++ ++ Y+Q + + L+ AW +ND+ RT++ + + P IA AC+++A
Sbjct: 152 VYHPYRPLLQYVQ--DMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQ 209
Query: 258 QIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKK 293
Q WF E+I EI L+LY + K
Sbjct: 210 Q---KDARQWFAELSVDMEKILEIIRVILKLYEQWK 242
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 78.2 bits (191), Expect = 2e-14
Identities = 76/205 (37%), Positives = 96/205 (46%), Gaps = 41/205 (20%)
Query: 336 PAS--KPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYN---------GVRKDSK 384
PAS K +E + EE+ K E ED A S YN +K ++
Sbjct: 141 PASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR 200
Query: 385 RSRN------SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSR-SHSESP 437
RSR+ SRS+SRS S + SRSRS + R ++ +SRS + SSR RSRSR S S S
Sbjct: 201 RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRS-SSRERSRSRGSKSRSS 259
Query: 438 RRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRD 497
R H S K ++ SS+ RK+SRSRS S G +
Sbjct: 260 SRSHRGSSSPRKRSYS----SSSSSPERNRKRSRSRSSSS---------------GDRKK 300
Query: 498 RRERSRSFERSHKS---KHHGGSRS 519
RR RSRS ER H+S H GSRS
Sbjct: 301 RRTRSRSPERRHRSSSGSSHSGSRS 325
Score = 49.7 bits (117), Expect = 7e-06
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 38/196 (19%)
Query: 344 REVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRS 403
++ + + P SI + KE E ++ + + D + S+
Sbjct: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEE 191
Query: 404 RSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRH 463
S+ + +NRRSRS + SS SRS SRS S S SS
Sbjct: 192 DSNKKK---SNRRSRSKSRSSHSRSSSRSSSPS----------------------SSRSR 226
Query: 464 GHKRKKSRSRSQSKS------RDHSDAAKKHRHERGHHRDRRERSRSF-------ERSHK 510
R +S S SQS+S R S +K R H R RS+ ER+ K
Sbjct: 227 SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
Query: 511 SKHHGGSRSGHGRHRR 526
S SG + RR
Sbjct: 287 RSRSRSSSSGDRKKRR 302
Score = 49.7 bits (117), Expect = 7e-06
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 337 ASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNS-RSASRS 395
++K S R +++ +S S + + P + S+S RSR+S R SRS
Sbjct: 193 SNKKKSNRRSRSKSRSSHSRS-SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
Query: 396 R-SRTRSRSRSH----TPR-RHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLK 449
R S++RS SRSH +PR R Y++ S RSRSRS S + +R SP +
Sbjct: 252 RGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERR 311
Query: 450 AKHTRDDLKSSNRHGHKRK 468
+ + S +R K+K
Sbjct: 312 HRSSSGSSHSGSRSSSKKK 330
Score = 47.8 bits (112), Expect = 3e-05
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 293 KPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKS 352
K N + E+E +K + + ++ K++ + + S +S PSS R
Sbjct: 182 KYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSS---------SRSSSPSSSRSRSRSRSR 232
Query: 353 PISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHY 412
S + + +R ++ S K SR+ R +S R R+ S S S +P R+
Sbjct: 233 SSSSSQSRSRSSSRERSRSRGS------KSRSSSRSHRGSSSPRKRSYSSSSS-SPERNR 285
Query: 413 NNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPH 447
RSRS + R + R+RS S R + GS H
Sbjct: 286 KRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSH 320
Score = 41.2 bits (95), Expect = 0.002
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR 394
S + SS RE S + ++ + R+++ S + ++ KRSR+ S+S
Sbjct: 237 SQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
Query: 395 SRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSR 431
R + R+RSRS RRH RS SG+ S SRS S+
Sbjct: 297 DRKKRRTRSRS-PERRH----RSSSGSSHSGSRSSSK 328
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 76.6 bits (187), Expect = 5e-14
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 358 VKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR-------SASRSRSRTRSRSRSHTPRR 410
++ V+ +P R++ S S + RSR+SR S+ S S++RSRSRS + R
Sbjct: 170 IRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSR 229
Query: 411 HYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKS 470
+ RS+S + S + +SRS S +S R H+ G K+K ++ K N + KS
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE-KIQNNDNVGKPKS 288
Query: 471 RSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERS-----HKSKHHGGSRS 519
RS S+ KS+ S + + R R R RS E+S +S+ GGSRS
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRS 342
Score = 71.6 bits (174), Expect = 2e-12
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNS----- 389
S + S R V+ E++ +S + +E RQ S+S G + RSR+
Sbjct: 298 SKSRSRSQERRVEEEKRGSVS---RGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKR 354
Query: 390 ----RSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRS-----RSRSRSHSESPRRH 440
RS SRSR+RSRS+S R+ + R S++G+ + RS+SRS S S +
Sbjct: 355 KGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKE 414
Query: 441 HNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSK------SRDHSDAAKKHRHERGH 494
H + R + +++ + R +SRS S+SK SR S +A K R R
Sbjct: 415 REHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTR-SRSK 473
Query: 495 HRDR---RERSRSFERSH 509
R R R SRS RSH
Sbjct: 474 SRSRSASRSPSRSRSRSH 491
Score = 69.3 bits (168), Expect = 8e-12
Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 29/212 (13%)
Query: 339 KPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRN---SRSASRS 395
K SP K++ KS + V++E +S +R+ RSR+ SRS SRS
Sbjct: 287 KSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRS 346
Query: 396 RSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSR-------------------SRSHSES 436
RS+++ + + R + RSRS + S RSR R RS S S
Sbjct: 347 RSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRS 406
Query: 437 PRRHHNHGSPHLKAKHTRDDLK--SSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGH 494
P R + H K++ ++ + + S N ++ +SRSRS SKS+ + + + R +
Sbjct: 407 PSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSAS 466
Query: 495 HRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
R +SRS +S SRS H R
Sbjct: 467 KTRSRSKSRS-----RSASRSPSRSRSRSHSR 493
Score = 68.2 bits (165), Expect = 2e-11
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 381 KDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS---------RSRSRSR 431
+D SR RS SRSRS +RSRSRS RH RSRSG+ S RS SRSR
Sbjct: 174 EDKPGSRRRRSYSRSRSHSRSRSRS----RHSRKSRSRSGSSKSSHSKSRSRSRSGSRSR 229
Query: 432 SHSESPRRHHNHGSPHLKAKHTRDDLKS-SNRHGHKRKKSRSRSQSKSRDHSDAAK-KHR 489
S S S + + +++ +S S+ G R KS+ +++ K +++ + K K R
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSR 289
Query: 490 HERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHR 525
H + RSRS ER + + G G + +
Sbjct: 290 SPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEK 325
Score = 65.1 bits (157), Expect = 2e-10
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 21/243 (8%)
Query: 289 YTRKKPNYELLE-KEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVK 347
Y+ K E L+ EV RK+ L E K G+ + S+ S
Sbjct: 150 YSDMKRALEKLDGTEVNGRKIRLVEDK--------PGSRRRRSYSRSRSHSRSRSRSRHS 201
Query: 348 AEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHT 407
+ +S + + K + S+S + RSR+ + SRS S+ +SRSRSH+
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHS 261
Query: 408 PRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTR--DDLKSSNRHGH 465
+ + + ++ + + + S SP RH + +++ R ++ + S G
Sbjct: 262 AGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGR 321
Query: 466 KRKK----SRSRSQSK------SRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHG 515
++K SRSRS+SK SR S + K + + + R RSRS +S +S+ G
Sbjct: 322 SQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRG 381
Query: 516 GSR 518
R
Sbjct: 382 SKR 384
Score = 62.4 bits (150), Expect = 1e-09
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRN-SRSAS 393
S K SP + K+ +S K + + QA + N +SR+ SR S
Sbjct: 242 SKKEKSRSPSKEKSRSRSH-----SAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKS 296
Query: 394 RSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSR-SRSRSRSHSESPRRHHNHGSPHLK--- 449
+S+SR+RS+ R + + R RS S R SRSRSRS S R + K
Sbjct: 297 KSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKG 356
Query: 450 AKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRR-ERSRSFERS 508
K +R++ +S +R K ++SR R + + KK + + + R RS S ER
Sbjct: 357 RKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKERE 416
Query: 509 HKSKHHGGSRSGHG 522
H +K R G G
Sbjct: 417 H-AKSESSQREGRG 429
Score = 51.2 bits (121), Expect = 2e-06
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 20/204 (9%)
Query: 290 TRKKPNYELLEKEVEKRKV-ALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKA 348
++ K E+ VE+ K ++ + + K L + + S G S + S ++ +
Sbjct: 296 SKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRK 355
Query: 349 EEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSK----RSRNSRSASRSRSRTRSRS- 403
K + + + R ++ +S G ++DSK + + RS+SR+ SRS
Sbjct: 356 GRKR----SREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSV 411
Query: 404 -------RSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSES-PRRHHNHGSPHLKAKHTRD 455
+S + +R +GT + +RSRSRS+S+S P S A TR
Sbjct: 412 SKEREHAKSESSQREGRGESENAGT-NQETRSRSRSNSKSKPNLPSESRSRSKSASKTRS 470
Query: 456 DLKSSNRHGHKRKKSRSRSQSKSR 479
KS +R R SRSRS+S SR
Sbjct: 471 RSKSRSRSA-SRSPSRSRSRSHSR 493
Score = 47.4 bits (111), Expect = 3e-05
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 313 AKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQAS 372
++ K++ G+ S G K + R +S + K E R+
Sbjct: 370 SRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRG 429
Query: 373 KSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYS-SRSRSRSR 431
+S G ++++ S S S+ + SRSRS + + + +SRS + S S SRSRSR
Sbjct: 430 ESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
Query: 432 SHSES 436
SHS S
Sbjct: 490 SHSRS 494
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 75.5 bits (184), Expect = 1e-13
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 11/170 (6%)
Query: 357 NVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR--SRSRTRSRSRSHTPRRHYNN 414
N++ ++ +P + S Y+G R S+ R SRS SR SRSR+RS S+S + R +
Sbjct: 175 NIRLIEDKPRTSHRRS---YSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSK 231
Query: 415 RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNR----HGHKRKKS 470
RSRS + +SRS+S+S +S R H+H K ++ + +S +R +G KS
Sbjct: 232 GRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKS 291
Query: 471 RSRSQSKSRDHSDAAKKHRHERG-HHRDRRERSRSFERSHKSKHHGGSRS 519
+SRS+S+SR +S R +R SRS RS +SK SRS
Sbjct: 292 KSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRS-RSKSRSRSRS 340
Score = 51.6 bits (122), Expect = 2e-06
Identities = 50/151 (33%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR 394
S S S R + S + + + R+ SKS + K R S S SR
Sbjct: 208 SRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKS-----KSKPKSDRGSHSHSR 262
Query: 395 SRSR-----TRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLK 449
SRS+ +RSRSRS +P+ N + SRS+SRS S P SP K
Sbjct: 263 SRSKDEYEKSRSRSRSRSPKE--NGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPK 320
Query: 450 AKHTRDDLKSSNRHGHKRKKSRSRSQSKSRD 480
+R +S R KSRSRS+S SRD
Sbjct: 321 RATSRSRSRS-------RSKSRSRSRSSSRD 344
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 415 RRSRSGTYSSRSRSRS-------RSHSESPRRHHNHGSPHLKAKHTR---DDLKSSNRHG 464
R++ TY+ + R+ RS+S+ R + ++ R D ++S+R
Sbjct: 131 RQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRRS 190
Query: 465 HK--------RKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGG 516
+ R++SRSRS+ SR S + K R R RSRS R +SK
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSK 250
Query: 517 SRSGHGRH 524
+S G H
Sbjct: 251 PKSDRGSH 258
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 73.9 bits (180), Expect = 3e-13
Identities = 80/252 (31%), Positives = 110/252 (43%), Gaps = 27/252 (10%)
Query: 300 EKEV-EKRKVALQEAKLKA-KGLNPDGTPALSTLGGFS-------PASKPSSPR-EVKAE 349
+KEV EK ++ L + K K +G+ P +T P KP R E+K++
Sbjct: 1210 KKEVAEKSQINLIDKKWKPLQGVGNLAAPNAATSSAVEVKVLTTVPEMKPQGLRIEIKSK 1269
Query: 350 EK----SPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRS 405
K S KT + R Q S S +D S S SRS+S T+SR R+
Sbjct: 1270 NKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRT 1329
Query: 406 HTPRRHYNNRRSRSGTYSSRSRSRSRSHSE---SPRRHHNHGSPHLKAKHTRDDLKSSNR 462
+ ++ RSRS T S RSRS SRS S S R + S + K R +S +R
Sbjct: 1330 RSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSR 1389
Query: 463 HGHKRKKSRSRS------QSKSRDHSDAAKKHRHERGHHRDRRERS-RSF---ERSHKSK 512
SRSRS S+SR S + + + RG +RR RS RS+ S +S
Sbjct: 1390 SSSYDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRSYGSDSESDRSY 1449
Query: 513 HHGGSRSGHGRH 524
H S S R+
Sbjct: 1450 SHHRSPSESSRY 1461
Score = 56.6 bits (135), Expect = 5e-08
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 37/188 (19%)
Query: 362 KKEPEDRQQASKSPYNGVRKDSK---RSRNSRSASRSRSRTRSRS--------RSHTPRR 410
+++ + Q++ S Y+ +S RSR+SRS S SRS TRSRS RS + R
Sbjct: 667 REKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSYTRSRSLASSHSRSRSPSSRS 726
Query: 411 HYNNRR------SRSGTYSS-----------RSRSRSRSHSESPRRHHNHGSPHLKAKHT 453
H N+ SRS +Y+S R RS + +S S ++H + L +K+
Sbjct: 727 HSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKY- 785
Query: 454 RDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSH--KS 511
+K +R RK S SRS S D+S +++ + +E+ ER+H +
Sbjct: 786 ---VKGRDRSSCVRKYSESRS---SLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQE 839
Query: 512 KHHGGSRS 519
K+ G +S
Sbjct: 840 KNRGEEKS 847
Score = 51.2 bits (121), Expect = 2e-06
Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 45/200 (22%)
Query: 335 SPASKPSSPREVKA----EEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
+P + SS EVK E P + ++ K + S ++ VRK ++ +R R
Sbjct: 1237 APNAATSSAVEVKVLTTVPEMKPQGLRIEIKSKN----KVRPGSLFDEVRKTARLNRRPR 1292
Query: 391 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 450
+ S S TP SR SRS SRSRS SE+ RH
Sbjct: 1293 NQESS-------SDEQTP--------SRDDDSQSRSPSRSRSKSETKSRHRTR------- 1330
Query: 451 KHTRDDLKSSNRHGHKRKKSRSRSQS-KSRDHSDAAKKHRHERGHHRDRRERSRSFERSH 509
S + H R +SRS + S +SR +S + + + RG R R RS+ +SH
Sbjct: 1331 ---------SVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSY-KSH 1380
Query: 510 KSKHHGGSRSG----HGRHR 525
++ SRS H R R
Sbjct: 1381 RTSSRSRSRSSSYDPHSRSR 1400
Score = 48.5 bits (114), Expect = 1e-05
Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 41/185 (22%)
Query: 339 KPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSR 398
KPS R + + K+ + +++ ++ S S Y+ KR +NS S + S+
Sbjct: 627 KPSYERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYH------KREKNSESDQSTYSK 680
Query: 399 TRSRSRSHTPRRHYNNRRSRSGTYS-SRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 457
RS +PR + RSRS + S +RSRS + SHS S
Sbjct: 681 YSDRSSESSPRSRSRSSRSRSYSRSYTRSRSLASSHSRS--------------------- 719
Query: 458 KSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRH-----ERGHHRDRRERSRSFERSHKSK 512
+ SRS S++K DHS ++ + + G RR RS + S K
Sbjct: 720 --------RSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHK 771
Query: 513 HHGGS 517
H S
Sbjct: 772 KHSSS 776
Score = 46.2 bits (108), Expect = 7e-05
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 347 KAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSH 406
K ++ + K K++ R + +K + D + S++S +S SRS
Sbjct: 429 KRRKEKKVKHKKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSS 488
Query: 407 TPRRHYNNRR---------SRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 457
+ H++++R S T+SSR RS+SHS+S ++ GS +R
Sbjct: 489 SLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQS----YSRGS-----SRSRTAS 539
Query: 458 KSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR 489
KSS+ H R +S+SRS SKS A+K R
Sbjct: 540 KSSS---HSRSRSKSRSSSKSGHRKRASKSPR 568
Score = 45.1 bits (105), Expect = 2e-04
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 15/162 (9%)
Query: 369 QQASKSPYNGVRKDSKRSRNS------RSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTY 422
Q++ YNG D +R+S R + + + + + + H RRH ++ R
Sbjct: 404 QRSRSWSYNGYYSDLSTARHSGHHKKRRKEKKVKHKKKGKKQKHC-RRHKQTKKRRILIP 462
Query: 423 SS--RSRSRSRSHSESPRRHHNHGSPHLKAKHT-RDDLKSSNRHGHKRKKSRSRSQSKSR 479
S S+S +R S R + S L + H+ + D S++ SR +S+
Sbjct: 463 SDIESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSK 522
Query: 480 DHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGH 521
HS + + RG R R S +SK S+SGH
Sbjct: 523 SHSQS-----YSRGSSRSRTASKSSSHSRSRSKSRSSSKSGH 559
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 48/167 (28%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR 394
S + + + R+ ++ +SP K+ K + S S + S S SRS SR
Sbjct: 1296 SSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSR 1355
Query: 395 SRSR-------TRSRS---RSHTPRRHYNNRRSRSGTYS--------------SRSRSRS 430
SRSR TRSRS RS+ R + RSRS +Y SRSRSRS
Sbjct: 1356 SRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYDSYYSRSRSRS 1415
Query: 431 RSH------------------------SESPRRHHNHGSPHLKAKHT 453
RS SES R + +H SP ++++
Sbjct: 1416 RSQRSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSHHRSPSESSRYS 1462
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 343 PREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSR 402
P ++++ + S + + +E R + S ++ R SK ++ +S+ SR R
Sbjct: 462 PSDIESSKSSTRRMK-SSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYR 520
Query: 403 SRSHTPRRHYNNRRSRSGTYS---SRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDD 456
S+SH+ + RSR+ + S SRSRS+SRS S+S R SP A ++
Sbjct: 521 SKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRKTASQLSEN 577
Score = 42.7 bits (99), Expect = 8e-04
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 370 QASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSR 429
++SKS ++ R R+SRS+S S + R S + + + S T+SSR R
Sbjct: 466 ESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQS-----SLTHSSRDSYR 520
Query: 430 SRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR 489
S+SHS+S ++ GS +R KSS S SRS+SKSR S + + R
Sbjct: 521 SKSHSQS----YSRGS-----SRSRTASKSS---------SHSRSRSKSRSSSKSGHRKR 562
Query: 490 HERGHHRDRRERSRS 504
+ + + S +
Sbjct: 563 ASKSPRKTASQLSEN 577
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 338 SKPSSPREVKAE---EKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR 394
S SS R +K+ E+S S ++ + D ++ K + + S+ S RS S
Sbjct: 467 SSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSY--RSKSH 524
Query: 395 SRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRR 439
S+S +R SRS T + ++ RSRS + SS + S+SPR+
Sbjct: 525 SQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRK 569
Score = 37.4 bits (85), Expect = 0.034
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 18/260 (6%)
Query: 273 TTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAK-GLNPDGTPALSTL 331
++ E E +E R RK +++ ++RK A + + K +NP G S
Sbjct: 206 SSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAMNPKGHSERSDT 265
Query: 332 G---GFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRN 388
++K P V+ EE P+ N ++++ + V +
Sbjct: 266 NEKRSVDSSAKREKP-VVRPEEIPPVPENRFLLRRDMPVVTAEPEPKIPDVAPIVSDQKP 324
Query: 389 SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHL 448
S S S + + R R HTP R RS S + S E +R + P
Sbjct: 325 SVSKSGRKIKGRGTIRYHTPPRS----RSCSESDDDDSSETPPHWKEEMQRLRAYRPPSG 380
Query: 449 KAKHTRDDLKS--SNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFE 506
+ D L S+R + RSRS S + +SD + RH GHH+ RR+ E
Sbjct: 381 EKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLSTA-RHS-GHHKKRRK-----E 433
Query: 507 RSHKSKHHGGSRSGHGRHRR 526
+ K K G + RH++
Sbjct: 434 KKVKHKKKGKKQKHCRRHKQ 453
Score = 36.2 bits (82), Expect = 0.076
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 421 TYSSRSRSRSRSHSESPRRHHNHGSPHLK-AKHTRDDLKSSNRHGHKRKKSRSRSQSKSR 479
TYS + + S S +R N S +K++ +SS R + +SRS S+S +R
Sbjct: 649 TYSLANIKETGSSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSYTR 708
Query: 480 DHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
S A+ H R R SRS R+ S H SRS
Sbjct: 709 SRSLASS-------HSRSRSPSSRSHSRNKYSDHSQCSRS 741
Score = 36.2 bits (82), Expect = 0.076
Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 11/191 (5%)
Query: 335 SPASKPSSPREVKAEEKSPISINVKTV-KKEPEDRQQASKSPYNGVRKDSKRSRNSRSAS 393
S S+ SS + +++ +++ KK ++ S S + + R+ S
Sbjct: 736 SQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCV 795
Query: 394 RSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGS------PH 447
R S +RS + + + ++S + R+H++ + S PH
Sbjct: 796 RKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKSERECPH 855
Query: 448 LKAKHTRDDLKSSNRHGHKRKKSR---SRSQSKSRDHSDAAKKHRHERGHHRDRRE-RSR 503
K + +++L R+G K K+ S+ S+S D K +++ D+ E +
Sbjct: 856 SKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKEEGEAT 915
Query: 504 SFERSHKSKHH 514
S S S+ H
Sbjct: 916 SDSESEVSEIH 926
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 354 ISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRT---RSRSRSHTPRR 410
I V K + ++ K P + DS + +S S S S S RSR R H R
Sbjct: 171 IDCGVLATKSIKDVFEKKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRP 230
Query: 411 HYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLK 449
+ R SS R++ H+ +P+ H + K
Sbjct: 231 KVKRSKKRRKEASSSEEPRNK-HAMNPKGHSERSDTNEK 268
Score = 32.0 bits (71), Expect = 1.4
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 359 KTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRH--YNNRR 416
+ V K ++ S G S S + + T+S + + P + + + +
Sbjct: 893 RDVTKNSKNDSHPSSDKEEGEATSDSESEVSEIHIKVKPTTKSSTNTSLPDDNGAWKSSK 952
Query: 417 SRSGTYSSR-SRSRSRSHSESPRRHHNHGSPHLKAKHT---RDDLKSSNRHGHKRKKSR 471
R+ T S S S S ++ P++H + +LK +HT ++ LK HK K +
Sbjct: 953 QRTSTSDSEGSCSNSENNRGKPQKHKHGSKENLKREHTKKVKEKLKGKKDKKHKAPKRK 1011
Score = 30.8 bits (68), Expect = 3.2
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 417 SRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQS 476
S SS S S S S SES H + KH R + + KR+K S S+
Sbjct: 195 SEGSDSSSNSSSSSESSSESELEHERSR----RRKHKR---RPKVKRSKKRRKEASSSEE 247
Query: 477 KSRDHSDAAKKHRHERGHHRDRRERSRSFER 507
H+ K H ER ++R S +R
Sbjct: 248 PRNKHAMNPKGH-SERSDTNEKRSVDSSAKR 277
Score = 29.6 bits (65), Expect = 7.1
Identities = 17/81 (20%), Positives = 35/81 (43%)
Query: 427 RSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAK 486
+ + +HSE N S + + + + S R HKR+ RS+ + ++ S + +
Sbjct: 188 KRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEE 247
Query: 487 KHRHERGHHRDRRERSRSFER 507
+ + ERS + E+
Sbjct: 248 PRNKHAMNPKGHSERSDTNEK 268
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 73.6 bits (179), Expect = 4e-13
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 337 ASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSR 396
A + +SP K +E+S +S++ + K + S+ RK R RS SRS+
Sbjct: 12 APEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERK---RKSDNEGRKHRSRSRSK 68
Query: 397 SRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDD 456
R S+ + ++H + + S + R R S RH + K +R
Sbjct: 69 EGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRK-----ERKSSRGR 123
Query: 457 LKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGG 516
S +R +R +SRSR + KSR S KK R R R ++ RSRS ER + +
Sbjct: 124 SHSRSRSRERRHRSRSRERKKSRSRSRERKKSR-SRSRER-KKSRSRSRERKRRIRSRSR 181
Query: 517 SRSGHGRHR 525
SRS H RHR
Sbjct: 182 SRSRH-RHR 189
Score = 55.5 bits (132), Expect = 1e-07
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASR--- 394
SK S ++ K+EE + + ++ + RK S+ +SRS SR
Sbjct: 75 SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERR 134
Query: 395 --SRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKH 452
SRSR R +SRS + R + RSR R +SRSRS + +
Sbjct: 135 HRSRSRERKKSRSRSRERKKSRSRSR-----ERKKSRSRSRE--------------RKRR 175
Query: 453 TRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR 489
R +S +RH H R +SRSR++S+SRD +K R
Sbjct: 176 IRSRSRSRSRHRH-RTRSRSRTRSRSRDRKKRIEKPR 211
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 32/165 (19%)
Query: 362 KKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGT 421
+K DR + K + V + S++ S SRSRSR R R + R+H
Sbjct: 14 EKTSPDRDK--KKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH---------- 61
Query: 422 YSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDH 481
RSRS S+ RRH + KSS +H + + S K R+
Sbjct: 62 -------RSRSRSKEGRRHESKD-------------KSSKKHKSEEHNDKEHSSDKGRER 101
Query: 482 SDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
++++ + R RS RS + SRS + R
Sbjct: 102 LNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSR 146
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 71.6 bits (174), Expect = 2e-12
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 298 LLEKEVEKRKVALQ---EAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPI 354
LL K++E R +L+ E L A + D + A + +S P E +EEK
Sbjct: 1737 LLPKDME-RLTSLRAGIEGPLLASDVGRDRSAASPVV-----SSMPERASESSSEEKDDY 1790
Query: 355 SINVK-------TVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSR-SRTRSRS--R 404
I VK + K + D+ + K + +R SKRS++S SR R S +RSR+ R
Sbjct: 1791 EIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKR 1850
Query: 405 SHTPRRHYNNRRSRSGT----YSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSS 460
S + H + RSRS + SSRSRS+SR + H R +SS
Sbjct: 1851 SSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSS 1910
Query: 461 NRHGHKRKKSRSRSQS-KSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSK 512
+R K ++RSR+ S +SR H+ + ++ G R RS S S +S+
Sbjct: 1911 SRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVG-----RRRSFSISPSRRSR 1958
Score = 50.4 bits (119), Expect = 4e-06
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRS 397
S+ S R ++ S ++V KE R +S ++ SR++R R+RS
Sbjct: 1863 SRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARS 1922
Query: 398 RT------------RSRSRSHTPRRHYNNRRS-RSGTYSSRSRSRSRSHSESPRRHHNHG 444
RT R RSRS RR ++ S RS T S RSR+ SR S +P R
Sbjct: 1923 RTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR-RSRTPSRRSRTP 1981
Query: 445 SPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSR-DHSDAAKKHRHERGHHRDRRERSR 503
S + R S R + RS S S R S + R R RR+RSR
Sbjct: 1982 SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRS--PIRRKRSR 2039
Query: 504 SFERSHKSK 512
S ER K
Sbjct: 2040 SSERGRSPK 2048
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 10/171 (5%)
Query: 342 SPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRS 401
S R +E KS +T + R+++SKS + + S RSR+ R SRSR++S
Sbjct: 1826 SKRSKSSEHKS----RKRTSESRSRARKRSSKSKSHRSQTRS-RSRSRRRRRSSRSRSKS 1880
Query: 402 RSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSES-PRRHHNHGSPHLKAKHTRDDLKSS 460
R R R +R RS + S+SR R R S S R ++ +R S
Sbjct: 1881 RGR----RSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSR 1936
Query: 461 NRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKS 511
R + RS S S SR +++ R R RSR+ R ++
Sbjct: 1937 RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1987
Score = 46.6 bits (109), Expect = 6e-05
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 25/233 (10%)
Query: 290 TRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAE 349
+ +K +YE+ K + + + K K + S+L S SK S + K
Sbjct: 1784 SEEKDDYEIFVKVKDTHE---KSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRT 1840
Query: 350 EKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKR-SRNSRSASRSRSR---------- 398
+S ++ K + Q S+S S+R R+SRS S+SR R
Sbjct: 1841 SESRSRARKRSSKSKSHRSQTRSRSR-------SRRRRRSSRSRSKSRGRRSVSKEKRKR 1893
Query: 399 -TRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRS-RSHSESPRRHHNHGSPHLKAKHTRDD 456
+ RS+S +R ++ R T +RSR+ S RS S +P R S + +
Sbjct: 1894 SPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISP 1953
Query: 457 LKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR--HERGHHRDRRERSRSFER 507
+ S + + RS++ SR +++ R R RR RSRS R
Sbjct: 1954 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVR 2006
Score = 38.9 bits (89), Expect = 0.012
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 414 NRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSR 473
+R + S SS S S SE + +K K T + K + K+ +
Sbjct: 1764 DRSAASPVVSSMPERASESSSEEKDDYEIF----VKVKDTHEKSKKNKNRDKGEKEKKRD 1819
Query: 474 SQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
S +SR + +H+ + R RSR+ +RS KSK H R RR
Sbjct: 1820 SSLRSRSKRSKSSEHKSRK---RTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869
Score = 38.9 bits (89), Expect = 0.012
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 359 KTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSR 418
+T + + S++P R S+RSR RSRS R RS S +P R +R
Sbjct: 1965 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPL 2024
Query: 419 SGTYSS----RSRSRSRSHSESPRR 439
+S R RSRS SP+R
Sbjct: 2025 RRRFSRSPIRRKRSRSSERGRSPKR 2049
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 71.6 bits (174), Expect = 2e-12
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 298 LLEKEVEKRKVALQ---EAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPI 354
LL K++E R +L+ E L A + D + A + +S P E +EEK
Sbjct: 1737 LLPKDME-RLTSLRAGIEGPLLASDVGRDRSAASPVV-----SSMPERASESSSEEKDDY 1790
Query: 355 SINVK-------TVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSR-SRTRSRS--R 404
I VK + K + D+ + K + +R SKRS++S SR R S +RSR+ R
Sbjct: 1791 EIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKR 1850
Query: 405 SHTPRRHYNNRRSRSGT----YSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSS 460
S + H + RSRS + SSRSRS+SR + H R +SS
Sbjct: 1851 SSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSS 1910
Query: 461 NRHGHKRKKSRSRSQS-KSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSK 512
+R K ++RSR+ S +SR H+ + ++ G R RS S S +S+
Sbjct: 1911 SRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVG-----RRRSFSISPSRRSR 1958
Score = 50.4 bits (119), Expect = 4e-06
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRS 397
S+ S R ++ S ++V KE R +S ++ SR++R R+RS
Sbjct: 1863 SRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARS 1922
Query: 398 RT------------RSRSRSHTPRRHYNNRRS-RSGTYSSRSRSRSRSHSESPRRHHNHG 444
RT R RSRS RR ++ S RS T S RSR+ SR S +P R
Sbjct: 1923 RTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR-RSRTPSRRSRTP 1981
Query: 445 SPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSR-DHSDAAKKHRHERGHHRDRRERSR 503
S + R S R + RS S S R S + R R RR+RSR
Sbjct: 1982 SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRS--PIRRKRSR 2039
Query: 504 SFERSHKSK 512
S ER K
Sbjct: 2040 SSERGRSPK 2048
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 10/171 (5%)
Query: 342 SPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRS 401
S R +E KS +T + R+++SKS + + S RSR+ R SRSR++S
Sbjct: 1826 SKRSKSSEHKS----RKRTSESRSRARKRSSKSKSHRSQTRS-RSRSRRRRRSSRSRSKS 1880
Query: 402 RSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSES-PRRHHNHGSPHLKAKHTRDDLKSS 460
R R R +R RS + S+SR R R S S R ++ +R S
Sbjct: 1881 RGR----RSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSR 1936
Query: 461 NRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKS 511
R + RS S S SR +++ R R RSR+ R ++
Sbjct: 1937 RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1987
Score = 46.6 bits (109), Expect = 6e-05
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 25/233 (10%)
Query: 290 TRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAE 349
+ +K +YE+ K + + + K K + S+L S SK S + K
Sbjct: 1784 SEEKDDYEIFVKVKDTHE---KSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRT 1840
Query: 350 EKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKR-SRNSRSASRSRSR---------- 398
+S ++ K + Q S+S S+R R+SRS S+SR R
Sbjct: 1841 SESRSRARKRSSKSKSHRSQTRSRSR-------SRRRRRSSRSRSKSRGRRSVSKEKRKR 1893
Query: 399 -TRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRS-RSHSESPRRHHNHGSPHLKAKHTRDD 456
+ RS+S +R ++ R T +RSR+ S RS S +P R S + +
Sbjct: 1894 SPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISP 1953
Query: 457 LKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR--HERGHHRDRRERSRSFER 507
+ S + + RS++ SR +++ R R RR RSRS R
Sbjct: 1954 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVR 2006
Score = 38.9 bits (89), Expect = 0.012
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 414 NRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSR 473
+R + S SS S S SE + +K K T + K + K+ +
Sbjct: 1764 DRSAASPVVSSMPERASESSSEEKDDYEIF----VKVKDTHEKSKKNKNRDKGEKEKKRD 1819
Query: 474 SQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
S +SR + +H+ + R RSR+ +RS KSK H R RR
Sbjct: 1820 SSLRSRSKRSKSSEHKSRK---RTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869
Score = 38.9 bits (89), Expect = 0.012
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 359 KTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSR 418
+T + + S++P R S+RSR RSRS R RS S +P R +R
Sbjct: 1965 RTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPL 2024
Query: 419 SGTYSS----RSRSRSRSHSESPRR 439
+S R RSRS SP+R
Sbjct: 2025 RRRFSRSPIRRKRSRSSERGRSPKR 2049
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 70.9 bits (172), Expect = 3e-12
Identities = 67/204 (32%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 344 REVKAEEKSPISINVKTVKKEPEDR-QQASKSPYNGVRKD---SKRSRNSRSASRSRSRT 399
R ++ E+ + K + DR ++ K G R+D K N R R RSR
Sbjct: 328 RRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRE 387
Query: 400 RS---RSRSHTP----------RRHYNNRR-SRSGTYSSRSRSRSRSHSESPRRHHNHGS 445
RS RSR RRH +++R S+ SRSRSR R H S R N G
Sbjct: 388 RSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKH-RSRSRSRNAG- 445
Query: 446 PHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDA---AKKHRHERGHHRDRRERS 502
K +R KSS ++KS RS+S S+ +D+ +KK H + R+ RS
Sbjct: 446 ---KRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRK-RS 501
Query: 503 RSFERSHKSKHHGGSRSGHGRHRR 526
RS ERSHK + H S+ +H R
Sbjct: 502 RSKERSHK-RDHSDSKDQSDKHDR 524
Score = 67.8 bits (164), Expect = 2e-11
Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 40/278 (14%)
Query: 263 TRPHWF-LLFGTTEEEIQEICIETLRLYTRK-----KPNYELLEKEVEKRKVALQEAKLK 316
T+ WF LF +Q+ + ++ RK K E +++ VE+R+ ++
Sbjct: 209 TKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRR-----SRSP 263
Query: 317 AKGLNPDGTPALSTLGGFSPASKPSSP--REVKAEEKSPISINVKTVKKEPEDRQQASKS 374
+ L+P +P S SS RE++ E++ ++ KE E ++ S+S
Sbjct: 264 RRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQ---RLEREAKEREKERRRSRS 320
Query: 375 PYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPR-----RHYNNRRSR-------SGTY 422
G+ + R SRS R RSR+RSR R R R N R R
Sbjct: 321 IDRGLER-----RRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERG 375
Query: 423 SSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLK-SSNRHGHKRKKSRSRSQSKSRDH 481
+ R + R RS S + K K +DD + ++ K++K SRS+S+ R H
Sbjct: 376 NEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKH 435
Query: 482 SDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
R + +R RSRS E+S K K+ +S
Sbjct: 436 ------RSRSRSRNAGKRSRSRSKEKSSKHKNESKEKS 467
Score = 67.0 bits (162), Expect = 4e-11
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 344 REVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRS-R 402
RE E++S + K K++ +DR+ R D + S+ + SRSRSR R R
Sbjct: 386 RERSKEQRSRGEVEEKKHKEDKDDRRH---------RDDKRDSKKEKKHSRSRSRERKHR 436
Query: 403 SRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNR 462
SRS + R RSRS SS+ ++ S+ S R + G K + + S
Sbjct: 437 SRSRS-RNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKE 495
Query: 463 HGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHH 514
RK+SRS+ +S RDHSD+ ++ DRR RS+S E+ + K H
Sbjct: 496 --KSRKRSRSKERSHKRDHSDS-----KDQSDKHDRR-RSQSIEQESQEKQH 539
Score = 63.5 bits (153), Expect = 4e-10
Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 38/284 (13%)
Query: 267 WFLLFGTTEEEIQEI----CI----ETLRLYTRKKPNYELLEKE--VEKRKVALQEAKLK 316
WF F EE++ C+ E LR + K + L V +K Q+ K +
Sbjct: 177 WFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTR 236
Query: 317 AKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPE---------D 367
+ + DG + + SPR + +SP ++ +E +
Sbjct: 237 PRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELE 296
Query: 368 RQQASKSPYNGVRKDSKRSRNSRSASR------SRSRTRSRSRSHTPRRHYNNRRSRSGT 421
R++ + ++ K R SRS R SRSR R RSRS + R R G
Sbjct: 297 REKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRS--------RDRKGD 348
Query: 422 YSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDH 481
R R R + + RR ++ + + K R + K+ RSR + + + H
Sbjct: 349 RRDRDREREKENERGRRRDRDYDK-----ERGNEREKERERSRERSKEQRSRGEVEEKKH 403
Query: 482 SDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHR 525
+ RH ++E+ S RS + KH SRS + R
Sbjct: 404 KEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKR 447
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 70.1 bits (170), Expect = 5e-12
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 26/257 (10%)
Query: 273 TTEEEIQEICIETLRLYTRKKPNYELL-EKEVEKRKVALQEAKLKAKGLNPDGTPALSTL 331
T +EE++ + + RK+ +LL +K++E+ K + + +LS L
Sbjct: 410 TDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLL 469
Query: 332 GGFSPASKPSSPREVKAEEKSPI-SINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
++ + V ++++P + +V KKE +++++ +S +G S NSR
Sbjct: 470 -----EAREADGDVVNEKKRTPNETTSVLEPKKEHKEKEKQGRSR-SGSSSSGSSSSNSR 523
Query: 391 SASRSRS-----------RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRR 439
++S S + +R+ SRS +P+R + RSRS T +R RSRSRS+S +
Sbjct: 524 TSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIKAR-RSRSRSYSRRIKI 582
Query: 440 HHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRR 499
N +K + R ++S +R +S SR + +SR S + +R R RDRR
Sbjct: 583 ESNRA--RVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRR 640
Query: 500 ----ERSRSFERSHKSK 512
+R SHK K
Sbjct: 641 KIDDQRGNLSGNSHKHK 657
Score = 61.2 bits (147), Expect = 2e-09
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Query: 329 STLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRN 388
S+ G +S+ SSP+ K +S S +K + + K N R + R
Sbjct: 538 SSSGSSRTSSRSSSPKRKKRHSRSR-SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRR 596
Query: 389 SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPR-----RHHNH 443
S S R R R+RS S RR + R R +SRSRSR R + R H H
Sbjct: 597 SNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKH 656
Query: 444 GSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAK---KHRHERGHHRDRRE 500
+ + ++ +S ++ K+ K R R Q K ++ + K + + +RE
Sbjct: 657 KGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRE 716
Query: 501 RSRSFERS 508
R+F RS
Sbjct: 717 SERTFSRS 724
Score = 60.8 bits (146), Expect = 3e-09
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRS 397
S+ S + S S TV S + ++ R+SRS S +
Sbjct: 508 SRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIK 567
Query: 398 RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 457
RSRSRS++ R + R+R R R RS +S R N SP + + +R
Sbjct: 568 ARRSRSRSYSRRIKIESNRAR---VKIRDRRRSNRNSIERERRRNR-SPSRERRRSRS-- 621
Query: 458 KSSNRHGHKRKKSRSRSQSKSRDH----SDAAKKHRHERGHHRDRRERSRSFERSHKSK 512
+S +R ++ +SRSR + K D S + KH+ E ++ERSRS ++ K K
Sbjct: 622 RSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKK 680
Score = 60.5 bits (145), Expect = 4e-09
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 304 EKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKK 363
EK K + + G + + ST S +S SS + +S
Sbjct: 501 EKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSS--------SP 552
Query: 364 EPEDRQQASKSPYNGVRKDSKRSRNSR---SASRSRSRTRSRSRSHTPRRHYNNRRSRSG 420
+ + R S+SP R+ RS + R ++R+R + R R RS+ RR+RS
Sbjct: 553 KRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRS- 611
Query: 421 TYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLK---SSNRHGHK-------RKKS 470
SR R RSRS S RR + + + DD + S N H HK RKK
Sbjct: 612 --PSRERRRSRSRSRD-RRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668
Query: 471 RSRSQSKSRDHSDAAKKHRHERGHHRDRRE 500
RSRS K R D ++ ++ + +RE
Sbjct: 669 RSRSIDKDRKKKDKEREREQDKRKEKQKRE 698
Score = 49.7 bits (117), Expect = 7e-06
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 376 YNGVRKDSKRSRN-SRSASRSRSRT-RSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSH 433
+ G K+ +R + SRS + R + + R R R+ R + +SS+ R +
Sbjct: 656 HKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQD-DRLKRK 714
Query: 434 SESPRRHHNHGSPHLKA-KH-TRDD-----LKSSNRHGHKRKKSRSRSQSKSRDHSDAAK 486
ES R GS +K +H +R D K S +H RS S+S AK
Sbjct: 715 RESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAK 774
Query: 487 KHRHERGHHRDRRERS-RSFERSHKSK 512
K +H R ++ +RS + R HKSK
Sbjct: 775 KPKHSRSRSVEKSQRSGKKASRKHKSK 801
Score = 43.9 bits (102), Expect = 4e-04
Identities = 40/145 (27%), Positives = 55/145 (37%), Gaps = 11/145 (7%)
Query: 344 REVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRS 403
+E K E I + K KE E Q K KD K S R R R+ S
Sbjct: 663 QERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFS 722
Query: 404 RS---------HTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTR 454
RS H R+ ++ S S S RS SESP + K KH+R
Sbjct: 723 RSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAK--KPKHSR 780
Query: 455 DDLKSSNRHGHKRKKSRSRSQSKSR 479
++ K+ + +S+S+SR
Sbjct: 781 SRSVEKSQRSGKKASRKHKSKSRSR 805
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 70.1 bits (170), Expect = 5e-12
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 26/257 (10%)
Query: 273 TTEEEIQEICIETLRLYTRKKPNYELL-EKEVEKRKVALQEAKLKAKGLNPDGTPALSTL 331
T +EE++ + + RK+ +LL +K++E+ K + + +LS L
Sbjct: 410 TDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLL 469
Query: 332 GGFSPASKPSSPREVKAEEKSPI-SINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
++ + V ++++P + +V KKE +++++ +S +G S NSR
Sbjct: 470 -----EAREADGDVVNEKKRTPNETTSVLEPKKEHKEKEKQGRSR-SGSSSSGSSSSNSR 523
Query: 391 SASRSRS-----------RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRR 439
++S S + +R+ SRS +P+R + RSRS T +R RSRSRS+S +
Sbjct: 524 TSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIKAR-RSRSRSYSRRIKI 582
Query: 440 HHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRR 499
N +K + R ++S +R +S SR + +SR S + +R R RDRR
Sbjct: 583 ESNRA--RVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRR 640
Query: 500 ----ERSRSFERSHKSK 512
+R SHK K
Sbjct: 641 KIDDQRGNLSGNSHKHK 657
Score = 61.2 bits (147), Expect = 2e-09
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Query: 329 STLGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRN 388
S+ G +S+ SSP+ K +S S +K + + K N R + R
Sbjct: 538 SSSGSSRTSSRSSSPKRKKRHSRSR-SPTIKARRSRSRSYSRRIKIESNRARVKIRDRRR 596
Query: 389 SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPR-----RHHNH 443
S S R R R+RS S RR + R R +SRSRSR R + R H H
Sbjct: 597 SNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKH 656
Query: 444 GSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAK---KHRHERGHHRDRRE 500
+ + ++ +S ++ K+ K R R Q K ++ + K + + +RE
Sbjct: 657 KGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRE 716
Query: 501 RSRSFERS 508
R+F RS
Sbjct: 717 SERTFSRS 724
Score = 60.8 bits (146), Expect = 3e-09
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRS 397
S+ S + S S TV S + ++ R+SRS S +
Sbjct: 508 SRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIK 567
Query: 398 RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 457
RSRSRS++ R + R+R R R RS +S R N SP + + +R
Sbjct: 568 ARRSRSRSYSRRIKIESNRAR---VKIRDRRRSNRNSIERERRRNR-SPSRERRRSRS-- 621
Query: 458 KSSNRHGHKRKKSRSRSQSKSRDH----SDAAKKHRHERGHHRDRRERSRSFERSHKSK 512
+S +R ++ +SRSR + K D S + KH+ E ++ERSRS ++ K K
Sbjct: 622 RSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKK 680
Score = 60.5 bits (145), Expect = 4e-09
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 304 EKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVKAEEKSPISINVKTVKK 363
EK K + + G + + ST S +S SS + +S
Sbjct: 501 EKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSS--------SP 552
Query: 364 EPEDRQQASKSPYNGVRKDSKRSRNSR---SASRSRSRTRSRSRSHTPRRHYNNRRSRSG 420
+ + R S+SP R+ RS + R ++R+R + R R RS+ RR+RS
Sbjct: 553 KRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRS- 611
Query: 421 TYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLK---SSNRHGHK-------RKKS 470
SR R RSRS S RR + + + DD + S N H HK RKK
Sbjct: 612 --PSRERRRSRSRSRD-RRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668
Query: 471 RSRSQSKSRDHSDAAKKHRHERGHHRDRRE 500
RSRS K R D ++ ++ + +RE
Sbjct: 669 RSRSIDKDRKKKDKEREREQDKRKEKQKRE 698
Score = 49.7 bits (117), Expect = 7e-06
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 376 YNGVRKDSKRSRN-SRSASRSRSRT-RSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSH 433
+ G K+ +R + SRS + R + + R R R+ R + +SS+ R +
Sbjct: 656 HKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQD-DRLKRK 714
Query: 434 SESPRRHHNHGSPHLKA-KH-TRDD-----LKSSNRHGHKRKKSRSRSQSKSRDHSDAAK 486
ES R GS +K +H +R D K S +H RS S+S AK
Sbjct: 715 RESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAK 774
Query: 487 KHRHERGHHRDRRERS-RSFERSHKSK 512
K +H R ++ +RS + R HKSK
Sbjct: 775 KPKHSRSRSVEKSQRSGKKASRKHKSK 801
Score = 43.9 bits (102), Expect = 4e-04
Identities = 40/145 (27%), Positives = 55/145 (37%), Gaps = 11/145 (7%)
Query: 344 REVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRS 403
+E K E I + K KE E Q K KD K S R R R+ S
Sbjct: 663 QERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFS 722
Query: 404 RS---------HTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTR 454
RS H R+ ++ S S S RS SESP + K KH+R
Sbjct: 723 RSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAK--KPKHSR 780
Query: 455 DDLKSSNRHGHKRKKSRSRSQSKSR 479
++ K+ + +S+S+SR
Sbjct: 781 SRSVEKSQRSGKKASRKHKSKSRSR 805
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 69.3 bits (168), Expect = 8e-12
Identities = 72/219 (32%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 327 ALSTLGGFSPASK----PSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKD 382
+LS G SP+ + PS R E+S S + ++ + E R ++ + R
Sbjct: 1624 SLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSH--RGP 1681
Query: 383 SKRSRNSRSASRSRSRTRSRSRSHTPRRHYN--NRRSRS-GTYSSRSRSRSRSHSESPRR 439
S+RS S S R RS ++ R + RRH++ R RS S RS S HS S R
Sbjct: 1682 SERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERS 1741
Query: 440 HHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR--HERGHH-- 495
HH+ + R S R + R RS S+ R HS + K H ER HH
Sbjct: 1742 HHSPSERRHHSPSERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHHSP 1801
Query: 496 RDRR-----ERSRS--FERSHKSKHHGGS-RSGHGRHRR 526
+RR ERSR ERSH+S S RS HRR
Sbjct: 1802 SERRRHSPLERSRHSLLERSHRSPSERRSHRSFERSHRR 1840
Score = 53.1 bits (126), Expect = 6e-07
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 8/191 (4%)
Query: 342 SPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYN-GVRKDSKRSRNSRSASRSRSRTR 400
SP E + S S + ++ +++ +SP R S+RS +S S S +
Sbjct: 1688 SPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSE 1747
Query: 401 SRSRSHTPRRHYN-NRRSRSGTYSSRSRSRS--RSHSESPRRHHNHG--SPHLKAKHTRD 455
R S + R H + + RS R RS S R HS S + HH+ S H ++ R
Sbjct: 1748 RRHHSPSERSHCSPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHHSPSERRRH 1807
Query: 456 DLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSH--KSKH 513
+RH + RS S+ +S + + + ER H + ERS S+
Sbjct: 1808 SPLERSRHSLLERSHRSPSERRSHRSFERSHRRISERSHSPSEKSHLSPLERSRCSPSER 1867
Query: 514 HGGSRSGHGRH 524
G S SG H
Sbjct: 1868 RGHSSSGKTCH 1878
Score = 51.2 bits (121), Expect = 2e-06
Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 368 RQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP--RRHYNNRRSRSGTYSSR 425
R++ + P R + RN RS S R+ R H+P R H + R + S R
Sbjct: 1546 RERTPRGPSERTRHNPSW-RNHRSPSERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSER 1604
Query: 426 S-RSRS-RSHSESPRRH-HNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHS 482
S RS S R+H P R H+ L + R S R H + RS S+ S
Sbjct: 1605 SWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRS 1664
Query: 483 DAAKKHRH----------ERGH--HRDRRERSRSFERSHKS----KHHGGSRSGH 521
+ ++HR ER H +RR RS S +RSH+ +HH S+ H
Sbjct: 1665 SSERRHRSPSQRSHRGPSERSHCSPSERRHRSPS-QRSHRGPSERRHHSPSKRSH 1718
Score = 51.2 bits (121), Expect = 2e-06
Identities = 48/164 (29%), Positives = 63/164 (38%), Gaps = 13/164 (7%)
Query: 365 PEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS 424
P +R S S N +RS +S S S ++ R + RRH++ S
Sbjct: 1601 PSERSWRSPSQRNHC-SPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSER-----SH 1654
Query: 425 RSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDA 484
RS S S S RRH + + R S R + R S+ R HS +
Sbjct: 1655 RSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPS 1714
Query: 485 AKKHRHE-RGHHRDRRERSRSF--ERSHKS----KHHGGSRSGH 521
+ HR R HR ERS ERSH S +HH S H
Sbjct: 1715 KRSHRSPARRSHRSPSERSHHSPSERSHHSPSERRHHSPSERSH 1758
Score = 50.4 bits (119), Expect = 4e-06
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 380 RKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRR 439
R S+R+R++ S RS + RS RRH++ + + S ++ S S
Sbjct: 1551 RGPSERTRHNPSWRNHRSPSERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSERSWRSPS 1610
Query: 440 HHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHR--HERGHHRD 497
NH SP ++ H+ S R H + R S+ R HS + + HR ER H
Sbjct: 1611 QRNHCSPPERSCHS-----LSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSS 1665
Query: 498 RRERSRS-FERSHKSKHHGGSRSGHGRHRR 526
R RS +RSH+ S R R
Sbjct: 1666 SERRHRSPSQRSHRGPSERSHCSPSERRHR 1695
Score = 48.1 bits (113), Expect = 2e-05
Identities = 64/294 (21%), Positives = 99/294 (33%), Gaps = 28/294 (9%)
Query: 255 RALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAK 314
R L++P PT + F T ++ KK Y E + ++ +
Sbjct: 1450 RPLRLPKPTDSQSGIAFQTASVGQPLRTVQKDSSSRSKKNFYRNETSSQESKNLSTPGTR 1509
Query: 315 LKAKGLNPDGTPALSTLG---------------GFSPASKPSSPREVKAEEKSPISINVK 359
++A+G G+P T F P P E S +
Sbjct: 1510 VQARGRILPGSPVKRTWHRHLKDKLTHKEHNHPSFYRERTPRGPSERTRHNPSWRNHRSP 1569
Query: 360 TVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRS 419
+ + + ++ SP R +S + RS R+ P R ++ R
Sbjct: 1570 SERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSERSWRSPSQRNHCSPPERSCHSLSER- 1628
Query: 420 GTYSSRSRSR----SRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSR-S 474
G +S RS R H R H S + +S ++ H+ RS S
Sbjct: 1629 GLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSHRGPSERSHCS 1688
Query: 475 QSKSRDHSDAAKKHR--HERGHHRDRRERSRS-FERSHKS----KHHGGSRSGH 521
S+ R S + + HR ER HH + RS RSH+S HH S H
Sbjct: 1689 PSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERSH 1742
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/192 (27%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 340 PSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRT 399
PS R E+S S + ++ P +R+ S S R S ++ S S +
Sbjct: 1745 PSERRHHSPSERSHCSPSERS-HCSPSERRHRSPSER---RHHSPSEKSHHSPSERSHHS 1800
Query: 400 RSRSRSHTP---RRHYNNRRSRSGTYSSRS-RSRSRSHSESPRRHHNHGSPHLKAKHTRD 455
S R H+P RH RS RS RS RSH R H+ + R
Sbjct: 1801 PSERRRHSPLERSRHSLLERSHRSPSERRSHRSFERSHRRISERSHSPSEKSHLSPLERS 1860
Query: 456 DLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSK--- 512
S R GH S S HS + + HR G + R+ ERSH+S
Sbjct: 1861 RCSPSERRGH--------SSSGKTCHSPSERSHRSPSG-----MRQGRTSERSHRSSCER 1907
Query: 513 -HHGGSRSGHGR 523
H S GR
Sbjct: 1908 TRHSPSEMRPGR 1919
Score = 29.6 bits (65), Expect = 7.1
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 14/132 (10%)
Query: 384 KRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNH 443
+RSR S S R S + S + R H RS SG R+ RS S RH
Sbjct: 1858 ERSRCSPSERRGHSSSGKTCHSPSERSH----RSPSGMRQGRTSERSHRSSCERTRH--- 1910
Query: 444 GSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSR 503
SP R S H ++SR + +S ++ H RD + ++
Sbjct: 1911 -SP----SEMRPGRPSGRNHCSPSERSRRSPLKEGLKYSFPGERPSHSLS--RDFKNQTT 1963
Query: 504 SFERSHKSKHHG 515
+HK+ G
Sbjct: 1964 LLGTTHKNPKAG 1975
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 68.9 bits (167), Expect = 1e-11
Identities = 58/158 (36%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 363 KEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTY 422
K E R S S Y+ D R R SRS S R R+RSRS + RR Y+ R SR
Sbjct: 97 KAKEGRNVYSSSRYD----DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRP--- 149
Query: 423 SSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRK-KSRSRSQSKSRDH 481
+ R R RSRSHS++ R H + S ++R KS + K K +SRS S +K+R
Sbjct: 150 TGRPR-RSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGT 208
Query: 482 SDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
S K ++ G ++ R + RS KS+ SRS
Sbjct: 209 SKTDSKTHYKSGSRYEKESRKKEPPRS-KSQSRSQSRS 245
Score = 36.6 bits (83), Expect = 0.058
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 362 KKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRR---HYNNRRSR 418
+ + R ++ P +K+ K SRSAS +++R S++ S T + Y +
Sbjct: 174 RSKSNSRSRSKSQP----KKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRK 229
Query: 419 SGTYSSRSRSRSRSHSESPRRHHNHGSP 446
S+S+SRS+S S S R + SP
Sbjct: 230 KEPPRSKSQSRSQSRSRSKSRSRSWTSP 257
Score = 35.0 bits (79), Expect = 0.17
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 362 KKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGT 421
KKE + + ++ + + R SK +S++ +S SR SR P R + RS+S
Sbjct: 188 KKEMKAKSRSRSASHTKTRGTSKT--DSKTHYKSGSRYEKESRKKEPPRSKSQSRSQS-- 243
Query: 422 YSSRSRSRSRSHSESPRRHHNH 443
RSRS+SRS S + + H
Sbjct: 244 ---RSRSKSRSRSWTSPKSSGH 262
Score = 32.0 bits (71), Expect = 1.4
Identities = 37/113 (32%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 415 RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRS 474
RRSRS +Y R RSRSRS + RR + SP + R R R
Sbjct: 117 RRSRSRSYERR-RSRSRSFDYNYRRSY---SPR-----------------NSRPTGRPR- 154
Query: 475 QSKSRDHSDAAK-KHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHRR 526
+SR HSD + KHR+ RSRS + K + SRS H +
Sbjct: 155 --RSRSHSDNDRFKHRNRSFSRSKSNSRSRS-KSQPKKEMKAKSRSRSASHTK 204
Score = 30.0 bits (66), Expect = 5.4
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 448 LKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFER 507
++ + + D K+ N+ K K+ R+ S D D ++ R R + R RR RSRSF+
Sbjct: 81 IEIQFAQGDRKTPNQM--KAKEGRNVYSSSRYDDYDRYRRSR-SRSYER-RRSRSRSFDY 136
Query: 508 SHKSKHHGGSRSGHGRHRR 526
+++ + + GR RR
Sbjct: 137 NYRRSYSPRNSRPTGRPRR 155
Score = 29.3 bits (64), Expect = 9.2
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 338 SKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRS 397
SK +E+KA+ +S + + KT D SK+ Y + K SR + RS+S
Sbjct: 183 SKSQPKKEMKAKSRSRSASHTKTRGTSKTD----SKTHYKSGSRYEKESRK-KEPPRSKS 237
Query: 398 RTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHH 441
++RS+SR SRS+SRSRS + H
Sbjct: 238 QSRSQSR-------------------SRSKSRSRSWTSPKSSGH 262
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 68.9 bits (167), Expect = 1e-11
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 17/185 (9%)
Query: 349 EEKSPISINVKTVKKEPEDRQQASKSPYNGVRK-DSKRSRNSRSASRSRSRTRSRSR--S 405
E +S IS ++ KKE + R S+S R S R R SRS SR RS ++SRSR S
Sbjct: 228 EAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRS 287
Query: 406 HTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGH 465
+PRR ++ R R SRS S++R + + +P R +S
Sbjct: 288 KSPRRRRSHSRERGRR--SRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRR 345
Query: 466 KRKKSRSRSQSKSRD------HSDAAKKHRHERG------HHRDRRERSRSFERSHKSKH 513
+R +S +RS K R S + ++H+ E+ RD RERS S ++ K K
Sbjct: 346 RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKE 405
Query: 514 HGGSR 518
R
Sbjct: 406 KDRER 410
Score = 64.7 bits (156), Expect = 2e-10
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 355 SINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNN 414
S ++ K + Q + +K+ KR R+SRS SRSR R S H R +
Sbjct: 216 SKEIEEAMKRVREAQSLISAAIEPDKKEEKR-RHSRSRSRSRRRRTPSSSRHRRSRSRSR 274
Query: 415 RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRS 474
RR S S+SRSR S+SPRR +H + + +R K+ ++ ++K RS++
Sbjct: 275 RR-------SHSKSRSRRRSKSPRRRRSHSRE--RGRRSRSTSKTRDKKKEDKEKKRSKT 325
Query: 475 QSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHK 510
KS + ++ ER RR RSRS RS K
Sbjct: 326 PPKSYSTARRSRSASRER-----RRRRSRSGTRSPK 356
Score = 62.8 bits (151), Expect = 8e-10
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 301 KEVEKRKVALQEAK-LKAKGLNPDGTPALSTLGGFSPASK----PSSPREVKAEEKSPIS 355
KE+E+ ++EA+ L + + PD S+ PSS R ++ +S
Sbjct: 217 KEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRR 276
Query: 356 INVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRS---RSRSHTPRRHY 412
+ K+ + + SKSP +R R SRS S++R + + + RS TP + Y
Sbjct: 277 SHSKSRSR------RRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSY 330
Query: 413 NN-RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSR 471
+ RRSRS + R R RSRS + SP++ SP K +S + HK++K +
Sbjct: 331 STARRSRSAS-RERRRRRSRSGTRSPKKPR---SPKRKLS------RSPSPRRHKKEKKK 380
Query: 472 SRSQSKSRDHSD-AAKKHRHERGHHRDRRERSRS 504
+ + +SRD + + K + + +DR +S S
Sbjct: 381 DKDKERSRDERERSTSKKKKSKDKEKDRERKSES 414
Score = 43.9 bits (102), Expect = 4e-04
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 379 VRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPR 438
++ D+ + R R S + P + RR SRSRSRS
Sbjct: 210 LKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRR--------HSRSRSRSR----- 256
Query: 439 RHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDR 498
R SS+RH R +SR RS SKSR +K R R H R+R
Sbjct: 257 ---------------RRRTPSSSRHRRSRSRSRRRSHSKSRSRR-RSKSPRRRRSHSRER 300
Query: 499 RERSRSFERSHKSK 512
RSRS ++ K
Sbjct: 301 GRRSRSTSKTRDKK 314
Score = 36.2 bits (82), Expect = 0.076
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 466 KRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRERSRSFERSHKSKHHGGSRSGHGRHR 525
KR+ SRSRS+S+ R ++ RH R R RR RS S RS + R H R R
Sbjct: 245 KRRHSRSRSRSRRRRTPSSS---RHRRSRSRSRR-RSHSKSRSRRRSKSPRRRRSHSRER 300
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 68.2 bits (165), Expect = 2e-11
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 381 KDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRH 440
+ + RS +SRS SRS+S +RSRSRSH+ ++ Y++ RSRS TY SRSRSR R +S RR
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSS-RSRSRTY-SRSRSRDRMYSRDYRRD 60
Query: 441 HNHG----SPHLKAKHTRDDLKSSNRHGHK--------RKKSRSRSQSKSRDHSDAAKKH 488
+ + P+ R + H+ R+ SRS + +SR S +
Sbjct: 61 YRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSV 120
Query: 489 RHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
+R R RSR RS +S SRS
Sbjct: 121 SSQRS-----RSRSRRSYRSSRSPRSSSSRS 146
Score = 62.4 bits (150), Expect = 1e-09
Identities = 48/151 (31%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 372 SKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP------RRHYNNRRSRSGTYSSR 425
S+S + + SR R +SRSRSRT SRSRS RR Y N R Y R
Sbjct: 15 SRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRMYSRDYRRDYRNNRGMRRPYGYR 74
Query: 426 SRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKS-RSRSQSKSRDHSDA 484
R R R H P +H+R S R G R +S + RS S R S +
Sbjct: 75 GRGRGYYQGGGGRYHRGGYRPVWNRRHSR-----SPRRGRSRSRSPKRRSVSSQRSRSRS 129
Query: 485 AKKHRHERGHHRDRRERSRSFERSHKSKHHG 515
+ +R R S + +S SK G
Sbjct: 130 RRSYRSSRSPRSSSSRSSSPYSKSPVSKRRG 160
Score = 42.7 bits (99), Expect = 8e-04
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 3/145 (2%)
Query: 360 TVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRS 419
T +K PE ++ SP + +RK ++ + R + + R + ++ R R
Sbjct: 471 TRQKSPEIHRRIDISP-STLRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRK 529
Query: 420 GTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQS--K 477
R S+ S R+ + + K +DD K H R S S S S
Sbjct: 530 ERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPS 589
Query: 478 SRDHSDAAKKHRHERGHHRDRRERS 502
SR+ ++ K+ E H + +E S
Sbjct: 590 SREEKESKKEREEEFKTHHEMKEYS 614
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 416 RSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQ 475
RS S ++SSRS+SRS+S S S R H+ R +SRSR+
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHS-------------------RKKRYSSRSRSRTY 43
Query: 476 SKSRDHSDAAKKHRHERGHHRD-RRERSRSFERSHKSKHHGGSRSGHGRHRR 526
S+SR ++ + R + RD R R ++ + G + G GR+ R
Sbjct: 44 SRSR-----SRDRMYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHR 90
Score = 37.4 bits (85), Expect = 0.034
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 389 SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHL 448
+R SRS R RSRSRS RR +++RSRS + S SRS S S SP
Sbjct: 98 NRRHSRSPRRGRSRSRS-PKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVS 156
Query: 449 KAKHTRD-DLKSSNRHGHKRKKSRSRSQSKSRD 480
K + +++ K + + +S+SQ + +D
Sbjct: 157 KRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKD 189
Score = 36.6 bits (83), Expect = 0.058
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 365 PEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS 424
P ++ S+SP G + R S S+ RSRSR+R RS+ R + SRS + S
Sbjct: 95 PVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSR---RSYRSSRSPRSSSSRSSSPYS 151
Query: 425 RSRSRSRSHSESPRRHHNHGSPH----LKAKHTRDDLKSSNRH 463
+S R S+ + G P LK+K ++++ K + H
Sbjct: 152 KSPVSKRRGSQEKQTKKAEGEPQEESPLKSK-SQEEPKDTFEH 193
Score = 34.3 bits (77), Expect = 0.29
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 395 SRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSR-SRSHSESPRRHHNH-GSPHLKAKH 452
SRS R RSRS +P+R RS S + SRSRSR S S SPR + SP+ K+
Sbjct: 102 SRSPRRGRSRSRSPKR-----RSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKS-- 153
Query: 453 TRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHE 491
S R G + K+++ +++ + ++ S K + E
Sbjct: 154 -----PVSKRRGSQEKQTK-KAEGEPQEESPLKSKSQEE 186
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 68.2 bits (165), Expect = 2e-11
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 381 KDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRH 440
+ + RS +SRS SRS+S +RSRSRSH+ ++ Y++ RSRS TY SRSRSR R +S RR
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSS-RSRSRTY-SRSRSRDRMYSRDYRRD 60
Query: 441 HNHG----SPHLKAKHTRDDLKSSNRHGHK--------RKKSRSRSQSKSRDHSDAAKKH 488
+ + P+ R + H+ R+ SRS + +SR S +
Sbjct: 61 YRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSV 120
Query: 489 RHERGHHRDRRERSRSFERSHKSKHHGGSRS 519
+R R RSR RS +S SRS
Sbjct: 121 SSQRS-----RSRSRRSYRSSRSPRSSSSRS 146
Score = 62.4 bits (150), Expect = 1e-09
Identities = 48/151 (31%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 372 SKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTP------RRHYNNRRSRSGTYSSR 425
S+S + + SR R +SRSRSRT SRSRS RR Y N R Y R
Sbjct: 15 SRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRMYSRDYRRDYRNNRGMRRPYGYR 74
Query: 426 SRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKS-RSRSQSKSRDHSDA 484
R R R H P +H+R S R G R +S + RS S R S +
Sbjct: 75 GRGRGYYQGGGGRYHRGGYRPVWNRRHSR-----SPRRGRSRSRSPKRRSVSSQRSRSRS 129
Query: 485 AKKHRHERGHHRDRRERSRSFERSHKSKHHG 515
+ +R R S + +S SK G
Sbjct: 130 RRSYRSSRSPRSSSSRSSSPYSKSPVSKRRG 160
Score = 42.7 bits (99), Expect = 8e-04
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 3/145 (2%)
Query: 360 TVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRS 419
T +K PE ++ SP + +RK ++ + R + + R + ++ R R
Sbjct: 644 TRQKSPEIHRRIDISP-STLRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRK 702
Query: 420 GTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQS--K 477
R S+ S R+ + + K +DD K H R S S S S
Sbjct: 703 ERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPS 762
Query: 478 SRDHSDAAKKHRHERGHHRDRRERS 502
SR+ ++ K+ E H + +E S
Sbjct: 763 SREEKESKKEREEEFKTHHEMKEYS 787
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 416 RSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQ 475
RS S ++SSRS+SRS+S S S R H+ R +SRSR+
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHS-------------------RKKRYSSRSRSRTY 43
Query: 476 SKSRDHSDAAKKHRHERGHHRD-RRERSRSFERSHKSKHHGGSRSGHGRHRR 526
S+SR ++ + R + RD R R ++ + G + G GR+ R
Sbjct: 44 SRSR-----SRDRMYSRDYRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHR 90
Score = 37.4 bits (85), Expect = 0.034
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 389 SRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHL 448
+R SRS R RSRSRS RR +++RSRS + S SRS S S SP
Sbjct: 98 NRRHSRSPRRGRSRSRS-PKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVS 156
Query: 449 KAKHTRD-DLKSSNRHGHKRKKSRSRSQSKSRD 480
K + +++ K + + +S+SQ + +D
Sbjct: 157 KRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKD 189
Score = 36.6 bits (83), Expect = 0.058
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 365 PEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSS 424
P ++ S+SP G + R S S+ RSRSR+R RS+ R + SRS + S
Sbjct: 95 PVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSR---RSYRSSRSPRSSSSRSSSPYS 151
Query: 425 RSRSRSRSHSESPRRHHNHGSPH----LKAKHTRDDLKSSNRH 463
+S R S+ + G P LK+K ++++ K + H
Sbjct: 152 KSPVSKRRGSQEKQTKKAEGEPQEESPLKSK-SQEEPKDTFEH 193
Score = 34.3 bits (77), Expect = 0.29
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 395 SRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSR-SRSHSESPRRHHNH-GSPHLKAKH 452
SRS R RSRS +P+R RS S + SRSRSR S S SPR + SP+ K+
Sbjct: 102 SRSPRRGRSRSRSPKR-----RSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKS-- 153
Query: 453 TRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHE 491
S R G + K+++ +++ + ++ S K + E
Sbjct: 154 -----PVSKRRGSQEKQTK-KAEGEPQEESPLKSKSQEE 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,567,950
Number of Sequences: 37866
Number of extensions: 980011
Number of successful extensions: 18088
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 8562
Number of HSP's gapped (non-prelim): 3600
length of query: 526
length of database: 18,247,518
effective HSP length: 107
effective length of query: 419
effective length of database: 14,195,856
effective search space: 5948063664
effective search space used: 5948063664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.