Search of human proteins with 91208435

Search of human proteins with 91208435

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|91208435 elongation protein 4 homolog [Homo sapiens]
         (424 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|91208435 elongation protein 4 homolog [Homo sapiens]               848   0.0  
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]      35   0.13 
gi|13129078 alveolar soft part sarcoma chromosome region, candid...    34   0.29 
gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens]      33   0.64 
gi|89062345 PREDICTED: similar to mindbomb homolog 2 [Homo sapiens]    32   0.84 
gi|4507205 serum response factor (c-fos serum response element-b...    32   1.4  
gi|13375618 24-dehydrocholesterol reductase precursor [Homo sapi...    31   2.4  
gi|67551265 transcription factor ELYS [Homo sapiens]                   30   4.1  
gi|11056010 prostate and breast cancer overexpressed 1 [Homo sap...    30   5.4  
gi|7661892 REST corepressor 1 [Homo sapiens]                           29   7.1  
gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens]             29   9.2  
gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens]             29   9.2  
gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens]             29   9.2  

>gi|91208435 elongation protein 4 homolog [Homo sapiens]
          Length = 424

 Score =  848 bits (2190), Expect = 0.0
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ 60
           MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
Sbjct: 1   MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ 60

Query: 61  LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 120
           LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
Sbjct: 61  LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 120

Query: 121 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF 180
           DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
Sbjct: 121 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF 180

Query: 181 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF 240
           GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
Sbjct: 181 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF 240

Query: 241 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI 300
           DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
Sbjct: 241 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI 300

Query: 301 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI 360
           ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
Sbjct: 301 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI 360

Query: 361 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK 420
           CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
Sbjct: 361 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK 420

Query: 421 HLDF 424
           HLDF
Sbjct: 421 HLDF 424


>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
          Length = 1185

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 23/232 (9%)

Query: 112 TLLVASAKEDPANILQELPAPLLDDKCKKEFDE----DVYNHKTPESNIKMKIAWRYQL- 166
           TL+      DP   L       + DKC++ +DE     V     P   ++ K  W  QL 
Sbjct: 384 TLITEQFVADPRLTLWRQQGTNMTDKCRQLWDELGALWVCIILNPHCKLEEKSCWLQQLQ 443

Query: 167 -LPKMEIGPVSSSRFGHYY-DASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGY 224
               +++ P+    +GH   + +  +PQ  I + +      P +   T  +E   L    
Sbjct: 444 KWSDLDVCPLEDGNYGHELPNITNALPQSAIHSPD--SLSRPRRTVFTRAIEGRELHWQD 501

Query: 225 TKLLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLWGDDI---CCAENGGNSHSL 281
           + L + I + +Y            QR   R+   + G PLW + +   C   +   SH  
Sbjct: 502 SHLQRIISSDVY-------TAPACQRESERLLFNSQGQPLWLEHVPTACARVDALRSHGY 554

Query: 282 TK-FLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIG 332
            K  L +   ++ T        +  +  Q K ++ R TT    +  LE ++G
Sbjct: 555 PKEALRLTVAIINTLRLQQQRQLEIYKHQKKELLQRGTT---TITNLEGWVG 603


>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
           1 [Homo sapiens]
          Length = 553

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 117 SAKEDPANILQELPAPLLDDKCKKE-FDEDVYNHKTPESNIKMKIAWRYQLLP---KMEI 172
           + K  P+ +L ++    L+D C+++ F+   Y+ K   S + + + WR+  LP   K+E+
Sbjct: 23  TVKVTPSTVLLQV----LEDTCRRQDFNPCEYDLKFQRSVLDLSLQWRFANLPNNAKLEM 78

Query: 173 GPVSSSRFGHYYDASKRMPQELIEASNWHGFF-----LPEKISSTLKVEPCSLTPG 223
            P S SR G   +   R+  +L + S     F     L E +S   ++  C   PG
Sbjct: 79  VPASRSREGP--ENMVRIALQLDDGSRLQDSFCSGQTLWELLSHFPQIRECLQHPG 132


>gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens]
          Length = 279

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 8   GSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGL 67
           G +A ++ +  + AS  NV  FQ   P+ S+  D G       G  P  R G  +V   +
Sbjct: 189 GPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQ---IGDGQSPECRLGSTVVDLSV 245

Query: 68  PALDQLLGGGLAVGTVLLIEEDKYNI 93
           P    ++  G A+ +   I + KY +
Sbjct: 246 PGKFGIIRPGCALESTTAILQQKYGL 271


>gi|89062345 PREDICTED: similar to mindbomb homolog 2 [Homo sapiens]
          Length = 233

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 20/128 (15%)

Query: 34  PRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNI 93
           P+ +V ND G   +  A     V   + L++ G  A +Q + G  A+    LI E +YN 
Sbjct: 78  PQPNVPNDEGNTALHFAALNNRVAAAEALLAHGWRAAEQNIMGKTALQ---LIYEKQYNE 134

Query: 94  YSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAPLLDDKCKKEFDEDVYNHKTPE 153
              LL                  S  E     +    A ++ D   KE DED  N +  +
Sbjct: 135 METLLM-----------------SRDETLDTYVPPTQASVMVDLSAKEGDEDEDNEREEK 177

Query: 154 SNIKMKIA 161
             ++ K+A
Sbjct: 178 PTVEAKVA 185


>gi|4507205 serum response factor (c-fos serum response
           element-binding transcription factor) [Homo sapiens]
          Length = 508

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 14  TGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTG 66
           T S + TA  ++ T     GP   +TN   P   S++ +  S  NG +L STG
Sbjct: 275 TTSTIQTAPSTSTTMQVSSGPSFPITNYLAPVSASVSPSAVSSANGTVLKSTG 327


>gi|13375618 24-dehydrocholesterol reductase precursor [Homo
           sapiens]
          Length = 516

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 49  IAGTRPSVRNGQ---LLVSTG-----LPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFK 100
           I    P V  GQ   LL S G     LP LD L  GGL +GT +     KY ++  +   
Sbjct: 130 IVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTA 189

Query: 101 Y--FLAEG 106
           Y   LA+G
Sbjct: 190 YELVLADG 197


>gi|67551265 transcription factor ELYS [Homo sapiens]
          Length = 2266

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 78   LAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAPLLDDK 137
            +  GTVL       N+ S +  + + ++  +N  T   +S  E+P+ I+  LPAP     
Sbjct: 1043 VVTGTVLTRSVFINNVLSKI-GEVWASKEPINSTTPFNSSKIEEPSPIVYSLPAP----- 1096

Query: 138  CKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEA 197
               E  E  +   TP S    KI+    L+ +    P   S F     +S + P  L+  
Sbjct: 1097 ---ELPEAFFG--TPISKASQKISRLLDLVVQPVPRPSQCSEF--IQQSSMKSPLYLVSR 1149

Query: 198  SNWHGFFLPEKISSTLKVEPCSL----------TPGYTKLLQFIQNIIYEEGFDGSNPQK 247
            S      LP   SS LK  P ++          TP   K  + +   +   GF    PQ 
Sbjct: 1150 S------LPS--SSQLKGSPQAISRASELHLLETPLVVKKAKSLAMSVTTSGFSEFTPQS 1201

Query: 248  KQRNILR 254
              R+ LR
Sbjct: 1202 ILRSTLR 1208


>gi|11056010 prostate and breast cancer overexpressed 1 [Homo
           sapiens]
          Length = 135

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 338 NPLYKDYHGLIHIRQI----------PRLNNLICDESDVKDLAFKLKRKLFTIER 382
           N  Y+D H +IHI QI          PRL  ++  E+ +    +K+ RK   ++R
Sbjct: 7   NQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVKR 61


>gi|7661892 REST corepressor 1 [Homo sapiens]
          Length = 482

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 2   AAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQL 61
           AA A C S AA+  S  A +S S   +     P     N     L + A    S  N   
Sbjct: 30  AASAACASPAATAASGAAASSASAAAASAAAAPN----NGQNKSLAAAAPNGNSSSNSWE 85

Query: 62  LVSTGLPALDQLLGGGLAVG 81
             S+G  + ++  GGG+ VG
Sbjct: 86  EGSSGSSSDEEHGGGGMRVG 105


>gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens]
          Length = 708

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 300 IITMPTHLIQNKAI-------IARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQ 352
           ++T P  L  N  I       IA++   +D  V L     S+   + +       I++++
Sbjct: 60  LLTFPARLPANTQILLLQTNNIAKIEYSTDFPVNLTGLDLSQNNLSSVTN-----INVKK 114

Query: 353 IPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVS 394
           +P+L ++  +E+ + +L  K   +L  ++ L++  +L  T+S
Sbjct: 115 MPQLLSVYLEENKLTELPEKCLSELSNLQELYINHNLLSTIS 156


>gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens]
          Length = 708

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 300 IITMPTHLIQNKAI-------IARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQ 352
           ++T P  L  N  I       IA++   +D  V L     S+   + +       I++++
Sbjct: 60  LLTFPARLPANTQILLLQTNNIAKIEYSTDFPVNLTGLDLSQNNLSSVTN-----INVKK 114

Query: 353 IPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVS 394
           +P+L ++  +E+ + +L  K   +L  ++ L++  +L  T+S
Sbjct: 115 MPQLLSVYLEENKLTELPEKCLSELSNLQELYINHNLLSTIS 156


>gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens]
          Length = 708

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 300 IITMPTHLIQNKAI-------IARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQ 352
           ++T P  L  N  I       IA++   +D  V L     S+   + +       I++++
Sbjct: 60  LLTFPARLPANTQILLLQTNNIAKIEYSTDFPVNLTGLDLSQNNLSSVTN-----INVKK 114

Query: 353 IPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVS 394
           +P+L ++  +E+ + +L  K   +L  ++ L++  +L  T+S
Sbjct: 115 MPQLLSVYLEENKLTELPEKCLSELSNLQELYINHNLLSTIS 156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,259,412
Number of Sequences: 37866
Number of extensions: 733386
Number of successful extensions: 1653
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 13
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.