Search of human proteins with 90819239

Search of human proteins with 90819239

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|90819239 hypothetical protein LOC55010 [Homo sapiens]
         (498 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|90819239 hypothetical protein LOC55010 [Homo sapiens]              991   0.0  
gi|197245440 hypothetical protein LOC23285 [Homo sapiens]              34   0.27 
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     33   0.60 
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo...    31   3.0  
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            31   3.0  
gi|89001111 hypothetical protein LOC401251 [Homo sapiens]              31   3.0  
gi|71061468 centromere protein E [Homo sapiens]                        30   3.9  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    30   5.1  
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    30   5.1  
gi|149408130 ret finger protein-like 1 [Homo sapiens]                  30   5.1  
gi|224586773 hypothetical protein LOC643854 [Homo sapiens]             30   6.6  
gi|153791839 sodium channel associated protein 1 [Homo sapiens]        30   6.6  
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom...    29   8.7  
gi|56847634 hypothetical protein LOC441294 [Homo sapiens]              29   8.7  

>gi|90819239 hypothetical protein LOC55010 [Homo sapiens]
          Length = 498

 Score =  991 bits (2563), Expect = 0.0
 Identities = 498/498 (100%), Positives = 498/498 (100%)

Query: 1   MDVTDHYEDVRKIYDDFLKNSNMLDLIDVYQKCRALTSNCENYNTVSPSQLLDFLSGKQY 60
           MDVTDHYEDVRKIYDDFLKNSNMLDLIDVYQKCRALTSNCENYNTVSPSQLLDFLSGKQY
Sbjct: 1   MDVTDHYEDVRKIYDDFLKNSNMLDLIDVYQKCRALTSNCENYNTVSPSQLLDFLSGKQY 60

Query: 61  AVGDETDLSIPTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGL 120
           AVGDETDLSIPTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGL
Sbjct: 61  AVGDETDLSIPTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGL 120

Query: 121 GREAFTDLKHAAREKQMSIFLVATSFIRTIELGGKGYAPPPSDPLRTHVKGLSNFINFID 180
           GREAFTDLKHAAREKQMSIFLVATSFIRTIELGGKGYAPPPSDPLRTHVKGLSNFINFID
Sbjct: 121 GREAFTDLKHAAREKQMSIFLVATSFIRTIELGGKGYAPPPSDPLRTHVKGLSNFINFID 180

Query: 181 KLDEILGEIPNPSIAGGQILSVIKMQLIKGQNSRDPFCKAIEEVAQDLDLRIKNIINSQE 240
           KLDEILGEIPNPSIAGGQILSVIKMQLIKGQNSRDPFCKAIEEVAQDLDLRIKNIINSQE
Sbjct: 181 KLDEILGEIPNPSIAGGQILSVIKMQLIKGQNSRDPFCKAIEEVAQDLDLRIKNIINSQE 240

Query: 241 GVVALSTTDISPARPKSHAINHGTAYCGRDTVKALLVLLDEEAANAPTKNKAELLYDEEN 300
           GVVALSTTDISPARPKSHAINHGTAYCGRDTVKALLVLLDEEAANAPTKNKAELLYDEEN
Sbjct: 241 GVVALSTTDISPARPKSHAINHGTAYCGRDTVKALLVLLDEEAANAPTKNKAELLYDEEN 300

Query: 301 TIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQEKKIKMKQTLIRSQFACTYKDDYMI 360
           TIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQEKKIKMKQTLIRSQFACTYKDDYMI
Sbjct: 301 TIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQEKKIKMKQTLIRSQFACTYKDDYMI 360

Query: 361 SKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSRKSTS 420
           SKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSRKSTS
Sbjct: 361 SKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSRKSTS 420

Query: 421 QTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKLAKVAKSNKCT 480
           QTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKLAKVAKSNKCT
Sbjct: 421 QTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKLAKVAKSNKCT 480

Query: 481 AKDKLISGQAKLTQFFRL 498
           AKDKLISGQAKLTQFFRL
Sbjct: 481 AKDKLISGQAKLTQFFRL 498


>gi|197245440 hypothetical protein LOC23285 [Homo sapiens]
          Length = 1354

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 36/153 (23%)

Query: 346 IRSQFACTYKDDYMISKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVH 405
           + S+F  T    YM+S  N N++N  S P+C      DL              TS G +H
Sbjct: 642 VNSKFYSTTALKYMVSNPNENSLN--SNPVC------DLD------------STSAGQIH 681

Query: 406 LDRSKNEKVSRKSTSQTGNKSSKRKQVDLDGENILCD------NRNEPPQHKNAKIPKKS 459
           L   +  +V RK T    NK S  K V+   +  LC+        N   + K +K+P + 
Sbjct: 682 LISDRENQVGRKDT----NKQSSIKCVE---DVSLCNPERTNGTLNSAQEDKKSKVPVEG 734

Query: 460 NDSQNRLYGKLAKVAKSNKCTAKD---KLISGQ 489
               ++L  + A     +     D   K  SGQ
Sbjct: 735 LTIPSKLSDESAMDEDKHATADSDVSSKCFSGQ 767


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 29/175 (16%)

Query: 217  FCKAIEEVAQDLDLRIKNIINSQEGVVALSTTD-ISPARPKSHAINHGTAYCGRDTVKAL 275
            F K  EE+A  LD+  K      E ++   T + I+ +  K++AI    ++C   T K  
Sbjct: 1206 FKKLSEELAIQLDICCKKT----EALLEAKTNELINISSSKTNAILSRISHCQHRTTKVK 1261

Query: 276  LVLLDEEAANAPTKNKAELLYDEENTIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQ 335
              LL +    +  + +   L +E+NT++         F+  T                ++
Sbjct: 1262 EALLIKTCTVSELEAQLRQLTEEQNTLN-------ISFQQATH--------------QLE 1300

Query: 336  EKKIKMKQTLIRSQFACTYKDDYMISKDNWNNVNLAS-KPLCVLYMENDLSEGVN 389
            EK+ ++K      +   T K+   + K+  N    AS K  C+  ++ +LSE +N
Sbjct: 1301 EKENQIKSMKADIESLVTEKE--ALQKEGGNQQQAASEKESCITQLKKELSENIN 1353


>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
           1 [Homo sapiens]
          Length = 745

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 20/184 (10%)

Query: 321 NSIKPLRERICVSMQEKKIKMKQTLIRSQFACTYKDDYMI--SKDNWNNVNLASKPLCVL 378
           N IK L ER+        +KMK  +   +   T  D+  +  + ++ +   L + P   L
Sbjct: 232 NHIKTLTERL--------LKMKDGVAMLEEDVTDDDNLELEMNSESEDGAYLDNPPKGAL 283

Query: 379 YMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSRKSTSQTGNKSSKRKQVDLDGEN 438
                L      +    T+      +++  S+ +K   + T     K+ + +Q  L  EN
Sbjct: 284 ---KKLIHAAKLNASLKTLEGERNQIYIQLSEVDKTKEELTEHI--KNLQTEQASLQSEN 338

Query: 439 ILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKL-----AKVAKSNKCTAKDKLISGQAKLT 493
              ++ N+  Q K   + +   +++ +LY KL      ++ K  K +  D++IS   +  
Sbjct: 339 THFESENQKLQQKLKVMTELYQENEMKLYRKLIVEEKCRLEKEEKLSKVDEMISHATEEL 398

Query: 494 QFFR 497
           + +R
Sbjct: 399 ETYR 402


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 319 VNNSIKPLRERICVSMQEKKI-------KMKQTLIRSQFACTYKDDYMISKDNWNNVNLA 371
           + N +K + +R+ + +   +I       K+++     QF+   KDD+ ++ DN   +   
Sbjct: 817 IKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSS--KDDFKLAVDNMQYLGEG 874

Query: 372 SKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSR--KSTSQT 422
           +     L   ND+ E   P V +  +  + G    D    EK++   K+ S T
Sbjct: 875 TYTATALQAANDMFEDARPGVKKVALVITDGQT--DSRDKEKLTEVVKNASDT 925


>gi|89001111 hypothetical protein LOC401251 [Homo sapiens]
          Length = 178

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 425 KSSKRKQVDLD--GENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKL--AKVAKSNKCT 480
           + ++R+Q+ L   GEN L D  +EP +   A+I K +   QN ++ K   + + K++ CT
Sbjct: 71  REAQRQQLHLGALGENFLTDLHSEPGRPPLAQIQKVNICLQNLIHEKFSPSPLNKASSCT 130

Query: 481 AKD 483
            +D
Sbjct: 131 TQD 133


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 409  SKNEKVSRKSTSQTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQ--NRL 466
            +KN  V+ ++T  T  K  +        EN L + + E   HK +KI K   + +  N +
Sbjct: 2366 NKNPHVTSRATQLTTEKIREL-------ENSLHEAK-ESAMHKESKIIKMQKELEVTNDI 2417

Query: 467  YGKL-AKVAKSNKCTAKDK 484
              KL AKV +SNKC  K K
Sbjct: 2418 IAKLQAKVHESNKCLEKTK 2436


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 133  REK-QMSIFLVATSFIRTIELGGKGYAP-------PPSDPLRTHVKGLSNFINFIDKLDE 184
            REK Q   F +    +R++   G  Y+P       P S P  TH KGL   +  +DK   
Sbjct: 2014 REKTQSKPFSIQELELRSLGYHGSSYSPEGVEPVSPVSSPSLTHDKGLPKHLEELDK-SH 2072

Query: 185  ILGEI----PNPSIAGGQ 198
            + GE+    P P   GG+
Sbjct: 2073 LEGELRPKQPGPVKLGGE 2090


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 133  REK-QMSIFLVATSFIRTIELGGKGYAP-------PPSDPLRTHVKGLSNFINFIDKLDE 184
            REK Q   F +    +R++   G  Y+P       P S P  TH KGL   +  +DK   
Sbjct: 2030 REKTQSKPFSIQELELRSLGYHGSSYSPEGVEPVSPVSSPSLTHDKGLPKHLEELDK-SH 2088

Query: 185  ILGEI----PNPSIAGGQ 198
            + GE+    P P   GG+
Sbjct: 2089 LEGELRPKQPGPVKLGGE 2106


>gi|149408130 ret finger protein-like 1 [Homo sapiens]
          Length = 317

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 305 HGTSILTLFRSPTQVNNSIKPL--RERICVSMQEKKIKMKQTLIRSQFACTYKDDYMISK 362
           HG  +L    S     N I+P    ER+   ++E + K+K+ L  +     ++ D  +  
Sbjct: 72  HGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDA 131

Query: 363 DNWNNVNLASKPL------CVLYMENDLSEGVNPSV 392
           D  NN  L S  L      C+     DL+E  + S+
Sbjct: 132 DTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSI 167


>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
          Length = 777

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 353 TYKDDYMISKDN--WNN-VNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRS 409
           T  DD +  K N  W N  NL   P   L     L      +V   ++     ++ +  S
Sbjct: 287 TTDDDNLELKVNSQWENGANLDDPPKGAL---KKLIHAAKLNVSLKSLEGERNHIIIQLS 343

Query: 410 KNEKVSRKSTSQTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGK 469
           + +K   + T     K+ + +Q  L  ENI  ++ N+  Q K   + +   +++ +LY K
Sbjct: 344 EVDKTKEELTEHI--KNLQTQQASLQSENIYFESENQKLQQKLKIMTEFYQENEMKLYRK 401

Query: 470 LAKVAKSNKCTAKDKLISGQAKLT 493
           L  V ++ +   ++KL   + K++
Sbjct: 402 LT-VEENYRIEEEEKLSRVEEKIS 424


>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
          Length = 688

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 281 EEAANAPTKNKAELLYDEENTIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQE-KKI 339
           EE  N     + ++   E++ +  HG    +  R   Q+ +SIK L  R+CV++QE  ++
Sbjct: 243 EELTNVTEDLQGQMKKKEKDVVSAHGREEAS-DRRLQQLQSSIKQLEIRLCVTIQEANQL 301

Query: 340 KMKQTLIRSQ 349
           + + T +  Q
Sbjct: 302 RTENTHLEKQ 311


>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
           sapiens]
          Length = 1804

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 403 NVHLDRSKNEKVSRKSTSQTGNKSSKRKQVDLDGENI-----LCDNRNE 446
           N+ L + + + + R+S S+TG+ S  RK  +  GE +     L DNR+E
Sbjct: 271 NLRLFKEREKPLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSE 319


>gi|56847634 hypothetical protein LOC441294 [Homo sapiens]
          Length = 777

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 406 LDRSKNEKVSRKSTSQTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNR 465
           +D++K E        QT       +Q  L  ENI  ++ N+  Q K   + +   +++ +
Sbjct: 345 VDKTKEELTEHIKNLQT-------QQASLQSENIYFESENQKLQQKLKIMTEFYQENEMK 397

Query: 466 LYGKLAKVAKSNKCTAKDKLISGQAKLTQ 494
           LY KL  V ++ +   ++KL   + KL++
Sbjct: 398 LYRKLT-VEENYRIEEEEKLSRVEEKLSR 425


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,258,512
Number of Sequences: 37866
Number of extensions: 793656
Number of successful extensions: 2180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 17
length of query: 498
length of database: 18,247,518
effective HSP length: 106
effective length of query: 392
effective length of database: 14,233,722
effective search space: 5579619024
effective search space used: 5579619024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.