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Search of human proteins with 8923177
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923177 differentially expressed in FDCP 8 isoform 2 [Homo
sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923177 differentially expressed in FDCP 8 isoform 2 [Homo sa... 412 e-116
gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo s... 358 1e-99
gi|146134388 YLP motif containing 1 [Homo sapiens] 35 0.041
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 33 0.12
gi|154689780 son of sevenless homolog 2 [Homo sapiens] 33 0.20
gi|109452595 zinc finger protein 205 [Homo sapiens] 33 0.20
gi|109452593 zinc finger protein 205 [Homo sapiens] 33 0.20
gi|122937289 kinesin family member 18B [Homo sapiens] 32 0.27
gi|156416026 zinc finger protein 219 [Homo sapiens] 32 0.35
gi|156415998 zinc finger protein 219 [Homo sapiens] 32 0.35
gi|156415996 zinc finger protein 219 [Homo sapiens] 32 0.35
gi|123173757 RAVER1 [Homo sapiens] 32 0.46
gi|221316624 dystonin isoform 4 [Homo sapiens] 31 0.60
gi|221316622 dystonin isoform 3 [Homo sapiens] 31 0.60
gi|221316618 dystonin isoform 2 [Homo sapiens] 31 0.60
gi|34577047 dystonin isoform 1 [Homo sapiens] 31 0.60
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 31 0.60
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 31 0.60
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 31 0.60
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 31 0.60
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 31 0.60
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 31 0.60
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 31 0.60
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 31 0.78
gi|56118234 proline rich 6 [Homo sapiens] 31 0.78
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 31 0.78
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 31 0.78
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 30 1.3
gi|24497453 nucleoporin 88kDa [Homo sapiens] 30 1.3
gi|64085083 hypoxia-inducible factor prolyl 4-hydroxylase isofor... 30 1.3
>gi|8923177 differentially expressed in FDCP 8 isoform 2 [Homo
sapiens]
Length = 197
Score = 412 bits (1060), Expect = e-116
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV 60
MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV
Sbjct: 1 MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV 60
Query: 61 MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL 120
MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL
Sbjct: 61 MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL 120
Query: 121 QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGGPRPRRGV 180
QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGGPRPRRGV
Sbjct: 121 QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGGPRPRRGV 180
Query: 181 RNERDQSSCLRWAHIQM 197
RNERDQSSCLRWAHIQM
Sbjct: 181 RNERDQSSCLRWAHIQM 197
>gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo
sapiens]
Length = 512
Score = 358 bits (920), Expect = 1e-99
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV 60
MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV
Sbjct: 62 MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERV 121
Query: 61 MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL 120
MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL
Sbjct: 122 MDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKL 181
Query: 121 QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTG 172
QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTG
Sbjct: 182 QELKDPNEDEPNIRVLLEHRFYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTG 233
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 35.0 bits (79), Expect = 0.041
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 26 QHEQGPGEEVPDVTP--EEALPELPPGEPEFRCPE---RVMDLGLS----EDHFSRPVGL 76
Q + P E P + P EE P LPP EP+ PE R+ L + + H VG
Sbjct: 341 QVPESPSSEEPPLPPPNEEVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGF 400
Query: 77 FLASDVQ---QLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNI 133
+Q QL+Q +++ +Q+I P D ++L H ++ Q+ + ++
Sbjct: 401 QYQGIMQKHTQLQQILQQYQQIIQPPPHIQTMSVD--MQLRHYEMQQQQFQHLYQEWERE 458
Query: 134 RVLLEHRFYKEKSKSVKQTCDK 155
L E + + K Q +K
Sbjct: 459 FQLWEEQLHSYPHKDQLQEYEK 480
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 12 QAHLNPFNKQSGPRQHEQ----GPG-EEVPDVTPEEALPELPPGEPEFRC------PERV 60
QA P + G QH Q GPG EE D + A+ PP PE R PE++
Sbjct: 528 QAPSPPAACEKGKEQHSQAEELGPGQEEAEDPEEKVAVSPTPPVSPEVRSTEPVAPPEQL 587
Query: 61 MDLGLSEDHFSRPVGLFLASD-----------VQQLRQAI-EECKQVILELPEQSEKQKD 108
+ L V L D +QQLR+ + +E ++ IL L +Q E+
Sbjct: 588 SEAALKA--MEEAVAQVLEQDQRHLLESKQEKMQQLREKLCQEEEEEILRLHQQKEQSLS 645
Query: 109 AVVRLIHLRLKLQELKDPNEDEPNI 133
++ + ++ +E + E+ +
Sbjct: 646 SLRERLQKAIEEEEARMREEESQRL 670
>gi|154689780 son of sevenless homolog 2 [Homo sapiens]
Length = 1332
Score = 32.7 bits (73), Expect = 0.20
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 17 PFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHFSRP 73
PFN Q P H + + D++ P PP P R P R L S+++ + P
Sbjct: 1231 PFNLQPPPLGHLHRDSDWLRDISTCPNSPSTPPSTPSPRVPRRCYVLSSSQNNLAHP 1287
>gi|109452595 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 32.7 bits (73), Expect = 0.20
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 20 KQSGPRQHEQGPGEEVPDVTPEEALPELPPGEP-EFRCPER 59
+ SGP + P E PD TP+ A P+ P EP E+R PE+
Sbjct: 243 RSSGPAKDSGQPAE--PDRTPDAAPPDPSPTEPQEYRVPEK 281
>gi|109452593 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 32.7 bits (73), Expect = 0.20
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 20 KQSGPRQHEQGPGEEVPDVTPEEALPELPPGEP-EFRCPER 59
+ SGP + P E PD TP+ A P+ P EP E+R PE+
Sbjct: 243 RSSGPAKDSGQPAE--PDRTPDAAPPDPSPTEPQEYRVPEK 281
>gi|122937289 kinesin family member 18B [Homo sapiens]
Length = 855
Score = 32.3 bits (72), Expect = 0.27
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 16 NPFNKQSGPRQHEQGPGEEVPDVTPEE----ALPELP 48
N +++ P ++GP EEVP PE+ ALPE P
Sbjct: 457 NSSDQEQSPEDEDEGPAEEVPTQMPEQNPTHALPESP 493
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.35
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 21 QSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRC 56
+S P+ + E TP A PE PP PEFRC
Sbjct: 241 RSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRC 276
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.35
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 21 QSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRC 56
+S P+ + E TP A PE PP PEFRC
Sbjct: 241 RSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRC 276
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.35
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 21 QSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRC 56
+S P+ + E TP A PE PP PEFRC
Sbjct: 241 RSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRC 276
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 31.6 bits (70), Expect = 0.46
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 21 QSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLAS 80
++G + P EE+P + PEE L E +FR +++ GL D ++ V L S
Sbjct: 39 EAGDAAERRAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVH-DLLS 97
Query: 81 DVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQEL 123
D + +++ K E+ + A+ RL+ +EL
Sbjct: 98 DYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLREREL 140
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 1057 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 1113
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 1068 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 1124
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 1206 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 1262
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 1028 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 1084
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 702 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 758
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 702 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 758
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 76 LFLASDVQQLRQAIEECKQVILELPEQSEK--QKDAVVRLI-----HLRLKLQELKD 125
+F SD+ QL + + CKQ EL + +E+ Q+++V L ++RL+L+ +D
Sbjct: 702 VFSGSDITQLEKEVNVCKQYYQELLKSAEREEQEESVYNLYISEVRNIRLRLENCED 758
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 31.2 bits (69), Expect = 0.60
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 75 GLFLASDVQQLRQAIEECKQVILE----LPEQ----SEKQKDAVVRLIHLRLKLQELKDP 126
GL L S++ QL + E ++ + E L EQ SEK D ++ L+LKL L++
Sbjct: 409 GLQLQSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQ 468
Query: 127 NEDEPNIRVLLEHRFYKEKSKSVKQ 151
+++ L+H+ K K + +Q
Sbjct: 469 LKEKVTNSTELQHQLDKTKQQHQEQ 493
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 78 LASDVQQLRQAIEECKQVILELPEQ----SEKQKDAVVRLIHL--------RLKLQELKD 125
L +++ Q IEE +Q+ ++L E ++K K+ R H+ K QELK
Sbjct: 326 LTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQELKR 385
Query: 126 PNEDEPNIRVLLEH 139
+ E NI LLEH
Sbjct: 386 KAQIEANIVALLEH 399
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 78 LASDVQQLRQAIEECKQVILELPEQ----SEKQKDAVVRLIHL--------RLKLQELKD 125
L +++ Q IEE +Q+ ++L E ++K K+ R H+ K QELK
Sbjct: 326 LTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQELKR 385
Query: 126 PNEDEPNIRVLLEH 139
+ E NI LLEH
Sbjct: 386 KAQIEANIVALLEH 399
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 78 LASDVQQLRQAIEECKQVILELPEQ----SEKQKDAVVRLIHL--------RLKLQELKD 125
L +++ Q IEE +Q+ ++L E ++K K+ R H+ K QELK
Sbjct: 326 LTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQELKR 385
Query: 126 PNEDEPNIRVLLEH 139
+ E NI LLEH
Sbjct: 386 KAQIEANIVALLEH 399
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 30.8 bits (68), Expect = 0.78
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 89 IEECKQVILELPEQSEKQKDAVVRLIHLRLKL-QELKDPNEDEPNIRVLLEHRFYKEKSK 147
+E+CK+V+LE ++ + K VR RL L ++ + N D E K+K K
Sbjct: 96 LEDCKEVLLEFRKKIAENKAKAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKKKK 155
Query: 148 SVKQTCDK 155
++Q +K
Sbjct: 156 KLRQREEK 163
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 30.8 bits (68), Expect = 0.78
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 17 PFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEP 52
P ++S PR E+GPGE P PE AL PP P
Sbjct: 61 PRLRRSSPRAQEEGPGEPPP---PELALLPPPPPPP 93
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 30.8 bits (68), Expect = 0.78
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 80 SDVQQLRQAIEE-CKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIR--VL 136
S +Q L+ A EE +Q++ E E+ + K V + LR K+Q L+ ED ++ L
Sbjct: 67 SAIQALKDAHEEEIQQILAETREKILQYKSKVTEELDLRRKIQVLESSLEDHIKMKQQAL 126
Query: 137 LEHRFYKEKSKSVK 150
E YK + + ++
Sbjct: 127 TEFEAYKHRVEDMQ 140
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 30.8 bits (68), Expect = 0.78
Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 8 ARFRQAHLNPFNKQS-GPRQHEQGPGEEVPDVTPEEAL--PELPPGEPEFRCPERVMDLG 64
+R RQA L N S R GPG E P P EA P PP EP P R
Sbjct: 42 SRRRQAALFFLNNISLDGRPPSLGPGGEKPPPPPAEAREPPAPPPPEPPTGLPARTPAPQ 101
Query: 65 LSEDHFSRPVGLFLASDVQQLRQAIEECKQVILE 98
P GL L Q+ R + C LE
Sbjct: 102 GLLSPTQVPTGLGLDGQRQRKRVTSQRCSLEFLE 135
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 30.0 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 160 IWGLIQTWYTCTGGPRPRRGVRNERDQSSCLRWAHIQ 196
IW Q W GGP P+RG +E LR H++
Sbjct: 49 IWA--QGWVPAAGGPAPKRGYSSEMKTEDELRVRHLE 83
>gi|24497453 nucleoporin 88kDa [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 40 PEEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILEL 99
PEE L L FR + ++ L+++ R V L +QL + C++ L
Sbjct: 558 PEECLQLLSRATQVFR-EQYILKQDLAKEEIQRRVKLLCDQKKKQLED-LSYCREERKSL 615
Query: 100 PEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHRFYKE 144
E +E+ D K +E K+ ED N L H F+ E
Sbjct: 616 REMAERLAD----------KYEEAKEKQEDIMNRMKKLLHSFHSE 650
>gi|64085083 hypoxia-inducible factor prolyl 4-hydroxylase isoform c
[Homo sapiens]
Length = 563
Score = 30.0 bits (66), Expect = 1.3
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 23 GPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGL------ 76
GP+ QGPG E P + P L + G ER + L DHF R + L
Sbjct: 94 GPQHRAQGPGPE-PTLGPLTRLEGIKVGH------ERKVQLVTDRDHFIRTLSLKPLLFE 146
Query: 77 ---FLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNED 129
FL + +L + + K + +E+ ++A+ + +L L L D N D
Sbjct: 147 IPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQVSQLDLFRLLDQNRD 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,387,373
Number of Sequences: 37866
Number of extensions: 471491
Number of successful extensions: 2104
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 170
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.