Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 8922911

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922911 radical S-adenosyl methionine domain containing 1
[Homo sapiens]
         (442 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho...   901   0.0  
gi|23510283 elongation protein 3 homolog [Homo sapiens]                37   0.047
gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2 ...    33   0.68 
gi|4505997 protein phosphatase 1D [Homo sapiens]                       32   1.2  
gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [...    32   1.2  
gi|21361716 Golgi phosphoprotein 3-like [Homo sapiens]                 30   3.4  
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo...    30   3.4  
gi|21389577 hypothetical protein LOC146705 [Homo sapiens]              30   3.4  
gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sap...    30   4.4  
gi|4505835 polycystin 2 [Homo sapiens]                                 30   5.7  
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    30   5.7  
gi|167857792 programmed cell death 1 precursor [Homo sapiens]          29   7.5  
gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]            29   7.5  
gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]            29   7.5  
gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo ...    29   7.5  
gi|134288915 myosin IIIB isoform 1 [Homo sapiens]                      29   7.5  
gi|134288892 myosin IIIB isoform 2 [Homo sapiens]                      29   7.5  
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]           29   9.8  
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]            29   9.8  
gi|169167176 PREDICTED: hypothetical protein [Homo sapiens]            29   9.8  
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ...    29   9.8  
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ...    29   9.8  
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ...    29   9.8  
gi|169166858 PREDICTED: hypothetical protein [Homo sapiens]            29   9.8  
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ...    29   9.8  
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ...    29   9.8  
gi|169166377 PREDICTED: hypothetical protein [Homo sapiens]            29   9.8  

>gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo
           sapiens]
          Length = 442

 Score =  901 bits (2329), Expect = 0.0
 Identities = 442/442 (100%), Positives = 442/442 (100%)

Query: 1   MALPGARARGWAAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWPYCEKRCSYCNFNK 60
           MALPGARARGWAAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWPYCEKRCSYCNFNK
Sbjct: 1   MALPGARARGWAAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWPYCEKRCSYCNFNK 60

Query: 61  YIPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAA 120
           YIPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAA
Sbjct: 61  YIPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAA 120

Query: 121 HLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRT 180
           HLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRT
Sbjct: 121 HLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRT 180

Query: 181 LAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQV 240
           LAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQV
Sbjct: 181 LAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQV 240

Query: 241 QRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLGVG 300
           QRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLGVG
Sbjct: 241 QRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLGVG 300

Query: 301 PGAHGRFMPQGAGGHTREARIQTLEPDNWMKEVMLFGHGTRKRVPLGRLELLEEVLALGL 360
           PGAHGRFMPQGAGGHTREARIQTLEPDNWMKEVMLFGHGTRKRVPLGRLELLEEVLALGL
Sbjct: 301 PGAHGRFMPQGAGGHTREARIQTLEPDNWMKEVMLFGHGTRKRVPLGRLELLEEVLALGL 360

Query: 361 RTDVGITHQHWQQFEPQLTLWDVFGANKEVQELLERGLLQLDHRGLRCSWEGLAVLDSLL 420
           RTDVGITHQHWQQFEPQLTLWDVFGANKEVQELLERGLLQLDHRGLRCSWEGLAVLDSLL
Sbjct: 361 RTDVGITHQHWQQFEPQLTLWDVFGANKEVQELLERGLLQLDHRGLRCSWEGLAVLDSLL 420

Query: 421 LTLLPQLQEAWQQRTPSPVPGG 442
           LTLLPQLQEAWQQRTPSPVPGG
Sbjct: 421 LTLLPQLQEAWQQRTPSPVPGG 442


>gi|23510283 elongation protein 3 homolog [Homo sapiens]
          Length = 547

 Score = 36.6 bits (83), Expect = 0.047
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 105 SPHTVAAVLEAVAQAAH-LPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDT 163
           S HT   + EAV  +   L   + +T+E  P       L++    G  RL IG+QS+ + 
Sbjct: 194 SGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYED 253

Query: 164 ELRLLGRTH---SACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH-- 218
             R   R H   + C++     ++      +V   +M  LP   +   + Q  E   +  
Sbjct: 254 VARDTNRGHTVKAVCESFHLAKDS----GFKVVAHMMPDLPNVGLERDIEQFTEFFENPA 309

Query: 219 -CDDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQR 259
              D L LY   + RGT L+   + G   +  P    E+  R
Sbjct: 310 FRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVAR 351


>gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2
           [Homo sapiens]
          Length = 192

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 153 LSIGLQSL--DDTELRLLGRTHSACDA----LRTLAEARRLFPGRVSVDLMLGLPAQQVG 206
           L +G QS      E+  L R ++  D      R + E RRL PG V  D  L       G
Sbjct: 28  LWLGTQSFVFQREEIAQLARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAG 87

Query: 207 PWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRG--ALPAPDPELAAE------MYQ 258
            W+G +      C  H SL +  L  GTAL ++   G   +  P    A E      M +
Sbjct: 88  GWMGAM------CLLHASLSEYVLLFGTALGSRGHSGETVVHGPGEATAVEWGPNTWMVE 141

Query: 259 RGRAVL 264
            GR V+
Sbjct: 142 YGRGVI 147


>gi|4505997 protein phosphatase 1D [Homo sapiens]
          Length = 605

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 2   ALPGARARGWAAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWPYCE 50
           ALPG    G   A  A + R  + +AG SP+P    RR +    +  C+
Sbjct: 57  ALPGGEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCD 105


>gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1
           [Homo sapiens]
          Length = 223

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 153 LSIGLQSL--DDTELRLLGRTHSACDA----LRTLAEARRLFPGRVSVDLMLGLPAQQVG 206
           L +G QS      E+  L R ++  D      R + E RRL PG V  D  L       G
Sbjct: 28  LWLGTQSFVFQREEIAQLARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAG 87

Query: 207 PWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRG 243
            W+G +      C  H SL +  L  GTAL ++   G
Sbjct: 88  GWMGAM------CLLHASLSEYVLLFGTALGSRGHSG 118


>gi|21361716 Golgi phosphoprotein 3-like [Homo sapiens]
          Length = 285

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 318 EARIQTLEPDNWMKEVMLFGHGTRKRVPLGRLELLEEVLALGLRTDVGIT 367
           E ++++ E  NW K       G  K +   RL L+EEVL LGL+   G T
Sbjct: 18  EKKMESEEDSNWEKSPDNEDSGDSKDI---RLTLMEEVLLLGLKDKEGYT 64


>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
           sapiens]
          Length = 1905

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 96  FGGGTPSLASPHTVAAVL------EAVAQAAHLPADLEVTLEANPTSAPGSRLAEFGAAG 149
           + G  PS+ S H   +VL        +   +HLP  LE T   +  S     L  F +  
Sbjct: 252 YNGSVPSVESLHQEVSVLVPDPTVSCLDDPSHLPDQLEDTPILSEDS-----LEPFNSLA 306

Query: 150 VNRLSIGLQSLDDTEL 165
              +S GL  +DDTEL
Sbjct: 307 PEPVSGGLYGIDDTEL 322


>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
          Length = 525

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 212 LQELLHHCDDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQRGRAVLREAG 268
           L+ LL+ C    S + L L+R +A   +    A P PDP     +YQ+ RA  ++ G
Sbjct: 73  LKILLYLCSHGSSFFLLILKRNSAFIQEAAAFAGP-PDPLHGNSLYQKVRAAAQDLG 128


>gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sapiens]
          Length = 1288

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 158  QSLDDTE-----LRLLGRTHSACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQL 212
            Q L D E     L  LG+ +   +  R+L  +       + + + LG   +    WLG  
Sbjct: 992  QQLRDREMEGRLLESLGQLYRNLNTARSLRRSLTCIKESLRIFIDLGETDKAAEAWLGAG 1051

Query: 213  QELLHHCDDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQRGRAVLREAGFHQY 272
            +  LH+      L +L L+      A +Q  AL + +P LA ++Y+    V      H++
Sbjct: 1052 R--LHYLMQEDELVELCLQ------AAIQT-ALKSEEPLLALKLYEEAGDVFFNGTRHRH 1102

Query: 273  EVSNFARNGAL 283
                + R GA+
Sbjct: 1103 HAVEYYRAGAV 1113


>gi|4505835 polycystin 2 [Homo sapiens]
          Length = 968

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 5   GARARG---WAAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWP 47
           GAR+RG   +  A   + RRRR E+ G  P P P G    L+ H P
Sbjct: 135 GARSRGLGGYHGAGHPSGRRRRREDQG-PPCPSPVGGGDPLHRHLP 179


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 4   PGARARGWAAAARAAQRRRR 23
           PGAR RG + AA AA RRRR
Sbjct: 134 PGARLRGLSGAAAAAARRRR 153


>gi|167857792 programmed cell death 1 precursor [Homo sapiens]
          Length = 288

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 13  AAARAAQRRRRVENAGGSPSPEPAGRRAALYV 44
           A  R  +RR  V  A  SPSP PAG+   L V
Sbjct: 140 AELRVTERRAEVPTAHPSPSPRPAGQFQTLVV 171


>gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 222 HLSLYQLSLERGTALFAQVQRGALPAPD-PELAAEMYQRGRAVLREAGFHQYEVSNFARN 280
           HL L Q++L     L+ + Q  A  +PD P L         A  R +G     +S     
Sbjct: 35  HLPLVQVNLHSEKHLWPENQLPAYCSPDKPVLQLLRCPVEEAAGRGSGHFHLSLSESIAL 94

Query: 281 -----GALSTHNWTYWQCGQYLGVGPGAHGRFMPQ----GAGGH 315
                GA + H       G+YLGV PG     +P     G GGH
Sbjct: 95  LGRPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGH 138


>gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 222 HLSLYQLSLERGTALFAQVQRGALPAPD-PELAAEMYQRGRAVLREAGFHQYEVSNFARN 280
           HL L Q++L     L+ + Q  A  +PD P L         A  R +G     +S     
Sbjct: 35  HLPLVQVNLHSEKHLWPENQLPAYCSPDKPVLQLLRCPVEEAAGRGSGHFHLSLSESIAL 94

Query: 281 -----GALSTHNWTYWQCGQYLGVGPGAHGRFMPQ----GAGGH 315
                GA + H       G+YLGV PG     +P     G GGH
Sbjct: 95  LGRPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGH 138


>gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo
           sapiens]
          Length = 183

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 222 HLSLYQLSLERGTALFAQVQRGALPAPD-PELAAEMYQRGRAVLREAGFHQYEVSNFARN 280
           HL L Q++L     L+ + Q  A  +PD P L         A  R +G     +S     
Sbjct: 35  HLPLVQVNLHSEKHLWPENQLPAYCSPDKPVLQLLRCPVEEAAGRGSGHFHLSLSKSIAL 94

Query: 281 -----GALSTHNWTYWQCGQYLGVGPGAHGRFMPQ----GAGGH 315
                GA + H       G+YLGV PG     +P     G GGH
Sbjct: 95  LGRPLGASAAHLPGSRAGGRYLGVAPGRRRSLLPSAVQPGRGGH 138


>gi|134288915 myosin IIIB isoform 1 [Homo sapiens]
          Length = 1314

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PRRLEEAAMQKCLVTEAQTLLRLSGVQRVESV 94
           P  L+EA    C+VT  +T++R + V R   V
Sbjct: 648 PEELQEALTSHCVVTRGETIIRANTVDRAADV 679


>gi|134288892 myosin IIIB isoform 2 [Homo sapiens]
          Length = 1341

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PRRLEEAAMQKCLVTEAQTLLRLSGVQRVESV 94
           P  L+EA    C+VT  +T++R + V R   V
Sbjct: 648 PEELQEALTSHCVVTRGETIIRANTVDRAADV 679


>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
          Length = 651

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 297 LGVGPGAHGRFMPQGAGGHTREARIQTLEPDNWMK 331
           L +   AH  + P G+ G   E  +Q ++P+ W K
Sbjct: 400 LVLSTAAHTAYKPIGSTGAAGEEELQVIQPEKWFK 434


>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 6   ARARGWAAAARA-AQRRRRVENAGGSPSPEPAGRRAA 41
           AR RG  AAA A AQR  +   AGG     PAG R A
Sbjct: 158 ARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPA 194


>gi|169167176 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 106 PHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSR 141
           PHTVA +L A +  A  PA  E  + +NP  AP  R
Sbjct: 27  PHTVANLLHATSSQACEPAG-EAEVGSNPARAPAQR 61


>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
           sapiens]
          Length = 305

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 29  GSP-SPEPAGRRAALYVHWPYCEKRCS 54
           GSP +P   GR+A+ +  WP+  ++CS
Sbjct: 98  GSPQAPAEKGRKASGFTKWPWASRKCS 124


>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
           sapiens]
          Length = 651

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 297 LGVGPGAHGRFMPQGAGGHTREARIQTLEPDNWMK 331
           L +   AH  + P G+ G   E  +Q ++P+ W K
Sbjct: 400 LVLSTAAHTAYKPIGSTGAAGEEELQVIQPEKWFK 434


>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
           sapiens]
          Length = 446

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 6   ARARGWAAAARA-AQRRRRVENAGGSPSPEPAGRRAA 41
           AR RG  AAA A AQR  +   AGG     PAG R A
Sbjct: 307 ARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPA 343


>gi|169166858 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 106 PHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSR 141
           PHTVA +L A +  A  PA  E  + +NP  AP  R
Sbjct: 27  PHTVANLLHATSSQACEPAG-EAEVGSNPARAPAQR 61


>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
           sapiens]
          Length = 306

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 29  GSP-SPEPAGRRAALYVHWPYCEKRCS 54
           GSP +P   GR+A+ +  WP+  ++CS
Sbjct: 98  GSPQAPAEKGRKASGFTKWPWASRKCS 124


>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
           sapiens]
          Length = 446

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 6   ARARGWAAAARA-AQRRRRVENAGGSPSPEPAGRRAA 41
           AR RG  AAA A AQR  +   AGG     PAG R A
Sbjct: 307 ARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPA 343


>gi|169166377 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 106 PHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSR 141
           PHTVA +L A +  A  PA  E  + +NP  AP  R
Sbjct: 27  PHTVANLLHATSSQACEPAG-EAEVGSNPARAPAQR 61


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,635,648
Number of Sequences: 37866
Number of extensions: 879978
Number of successful extensions: 2736
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2726
Number of HSP's gapped (non-prelim): 28
length of query: 442
length of database: 18,247,518
effective HSP length: 105
effective length of query: 337
effective length of database: 14,271,588
effective search space: 4809525156
effective search space used: 4809525156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press