Guide to the Human Genome
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Name: CDC5L Sequence: fasta or formatted (802aa) NCBI GI: 11067747
Description:

CDC5-like

Referenced in:

Additional Cell Cycle Functions
Hematopoiesis and Erythrocytes
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         58           2
 C cysteine            0.5          4           1
 D aspartate           5.6         45           2
 E glutamate          11.3         91           4
 F phenylalanine       1.5         12           1
 G glycine             4.4         35           2
 H histidine           2.1         17           2
 I isoleucine          4.1         33           2
 K lysine              9.6         77           2
 L leucine            10.3         83           3
 M methionine          2.5         20           1
 N asparagine          3.9         31           2
 P proline             5.5         44           2
 Q glutamine           5.2         42           2
 R arginine            7.7         62           2
 S serine              5.7         46           2
 T threonine           5.4         43           2
 V valine              3.9         31           2
 W tryptophan          1.0          8           1
 Y tyrosine            2.5         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDC5-like 
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform ...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.031   v-myb myeloblastosis viral oncogene homolog isoform...
MYBL1                 0.030   v-myb myeloblastosis viral oncogene homolog (avian)...
MYBL1                 0.030   v-myb myeloblastosis viral oncogene homolog (avian)...
MYBL2                 0.030   MYB-related protein B 
SNAPC4                0.024   small nuclear RNA activating complex, polypeptide 4,...
RBM25                 0.015   RNA binding motif protein 25 
RNF20                 0.015   ring finger protein 20 
BAT2D1                0.014   HBxAg transactivated protein 2 
DSP                   0.013   desmoplakin isoform I 
CENPE                 0.013   centromere protein E 
CGNL1                 0.013   cingulin-like 1 
PLEC1                 0.013   plectin 1 isoform 11 
PLEC1                 0.013   plectin 1 isoform 10 
PLEC1                 0.013   plectin 1 isoform 8 
PLEC1                 0.013   plectin 1 isoform 7 
PLEC1                 0.013   plectin 1 isoform 6 
PLEC1                 0.013   plectin 1 isoform 3 
PLEC1                 0.013   plectin 1 isoform 2 
PLEC1                 0.013   plectin 1 isoform 1 
NCOR1                 0.013   nuclear receptor co-repressor 1 
LOC100134067          0.013   PREDICTED: hypothetical protein 
LOC100133599          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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