Guide to the Human Genome
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Name: ZBBX Sequence: fasta or formatted (800aa) NCBI GI: 87196347
Description:

zinc finger, B-box domain containing

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         31           3
 C cysteine            2.4         19           1
 D aspartate           5.9         47           2
 E glutamate          11.0         88           4
 F phenylalanine       3.4         27           2
 G glycine             3.0         24           1
 H histidine           2.4         19           2
 I isoleucine          3.9         31           1
 K lysine              9.5         76           2
 L leucine            10.1         81           3
 M methionine          1.1          9           2
 N asparagine          5.8         46           2
 P proline             3.8         30           1
 Q glutamine           5.5         44           1
 R arginine            4.2         34           2
 S serine             11.5         92           3
 T threonine           5.4         43           2
 V valine              4.5         36           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.1         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, B-box domain containing 
CENPE                 0.017   centromere protein E 
MYH10                 0.011   myosin, heavy polypeptide 10, non-muscle 
GOLGB1                0.010   golgi autoantigen, golgin subfamily b, macrogolgin ...
TRIP11                0.010   thyroid hormone receptor interactor 11 
DSPP                  0.010   dentin sialophosphoprotein preproprotein 
MYH13                 0.010   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CCDC88A               0.010   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.010   coiled-coil domain containing 88A isoform 1 
GCC2                  0.009   GRIP and coiled-coil domain-containing 2 
LOC440243             0.009   PREDICTED: Putative golgin subfamily A member 6-lik...
ANKRD26               0.009   ankyrin repeat domain 26 
KIF27                 0.008   kinesin family member 27 
CTAGE1                0.008   cutaneous T-cell lymphoma-associated antigen 1 isofo...
CENPF                 0.008   centromere protein F 
TET1                  0.008   CXXC finger 6 
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
EIF5B                 0.007   eukaryotic translation initiation factor 5B 
CCDC144A              0.007   coiled-coil domain containing 144A 
CEP110                0.007   centrosomal protein 110kDa 
LOC727832             0.006   golgi autoantigen, golgin subfamily a-like 
RGS3                  0.006   regulator of G-protein signalling 3 isoform 4 
RGS3                  0.006   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.006   regulator of G-protein signalling 3 isoform 5 
RGS3                  0.006   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.006   regulator of G-protein signalling 3 isoform 1 
BAZ1A                 0.006   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.006   bromodomain adjacent to zinc finger domain, 1A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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