Guide to the Human Genome
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Name: TMCO3 Sequence: fasta or formatted (677aa) NCBI GI: 157388921
Description:

transmembrane and coiled-coil domains 3

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         47           2
 C cysteine            1.3          9           1
 D aspartate           3.2         22           2
 E glutamate           7.4         50           4
 F phenylalanine       5.0         34           2
 G glycine             5.9         40           1
 H histidine           1.6         11           2
 I isoleucine          6.6         45           2
 K lysine              5.0         34           2
 L leucine            14.6         99           3
 M methionine          2.8         19           1
 N asparagine          2.2         15           2
 P proline             3.0         20           1
 Q glutamine           4.1         28           1
 R arginine            5.2         35           2
 S serine              8.1         55           3
 T threonine           4.1         28           2
 V valine              9.6         65           3
 W tryptophan          1.2          8           1
 Y tyrosine            1.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane and coiled-coil domains 3 
MYH11                 0.015   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.015   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.015   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.015   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC643854             0.013   hypothetical protein LOC643854 
MYO6                  0.013   myosin VI 
CEP250                0.013   centrosomal protein 2 
MYH14                 0.013   myosin, heavy chain 14 isoform 1 
MYH14                 0.013   myosin, heavy chain 14 isoform 2 
MYH14                 0.013   myosin, heavy chain 14 isoform 3 
LEKR1                 0.013   leucine, glutamate and lysine rich 1 
CTAGE6                0.013   CTAGE family, member 6 
CNTLN                 0.013   centlein isoform 1 
GCOM1                 0.013   GRINL1A combined protein isoform 2 
GCOM1                 0.013   GRINL1A combined protein isoform 1 
GCOM1                 0.013   GRINL1A combined protein isoform 8 
GCOM1                 0.013   GRINL1A upstream protein isoform 7 
LOC441294             0.013   hypothetical protein LOC441294 
MYH4                  0.013   myosin, heavy polypeptide 4, skeletal muscle 
WDR87                 0.012   NYD-SP11 protein 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 1 
MYH13                 0.012   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CTAGE4                0.012   CTAGE family, member 4 
TRIML2                0.012   tripartite motif family-like 2 
GOLGA4                0.012   golgi autoantigen, golgin subfamily a, 4 
MYH7B                 0.012   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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