Guide to the Human Genome
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Search of human proteins with 85068512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
         (345 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]        689   0.0  
gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]        689   0.0  
gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]        689   0.0  
gi|213417919 protein kinase, interferon-inducible double strande...   258   7e-69
gi|213417911 protein kinase, interferon-inducible double strande...   258   7e-69
gi|4505581 protein kinase, interferon-inducible double stranded ...   258   7e-69
gi|7657625 staufen homolog 2 [Homo sapiens]                            79   5e-15
gi|82659089 staufen isoform a [Homo sapiens]                           79   8e-15
gi|82659087 staufen isoform b [Homo sapiens]                           79   8e-15
gi|82659085 staufen isoform a [Homo sapiens]                           79   8e-15
gi|82659083 staufen isoform a [Homo sapiens]                           79   8e-15
gi|82659091 staufen isoform c [Homo sapiens]                           77   2e-14
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo...    73   4e-13
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s...    73   4e-13
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s...    73   4e-13
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s...    73   4e-13
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa...    68   1e-11
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa...    68   1e-11
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa...    68   1e-11
gi|21361745 spermatid perinuclear RNA binding protein [Homo sapi...    60   2e-09
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa...    60   4e-09
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom...    59   8e-09
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom...    59   8e-09
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    59   8e-09
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho...    58   1e-08
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    58   1e-08
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]        50   4e-06
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           39   0.007
gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens]    39   0.009
gi|208431829 eukaryotic translation initiation factor 2-alpha ki...    35   0.075

>gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]
          Length = 345

 Score =  689 bits (1779), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK
Sbjct: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
           AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR
Sbjct: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
           SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF
Sbjct: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP
Sbjct: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG
Sbjct: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
           LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
Sbjct: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345


>gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]
          Length = 366

 Score =  689 bits (1779), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK
Sbjct: 22  MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 81

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
           AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR
Sbjct: 82  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 141

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
           SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF
Sbjct: 142 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 201

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP
Sbjct: 202 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 261

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG
Sbjct: 262 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 321

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
           LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
Sbjct: 322 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366


>gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
          Length = 345

 Score =  689 bits (1779), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK
Sbjct: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
           AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR
Sbjct: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
           SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF
Sbjct: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP
Sbjct: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG
Sbjct: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
           LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
Sbjct: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345


>gi|213417919 protein kinase, interferon-inducible double stranded
           RNA dependent activator isoform 3 [Homo sapiens]
          Length = 288

 Score =  258 bits (658), Expect = 7e-69
 Identities = 147/345 (42%), Positives = 195/345 (56%), Gaps = 57/345 (16%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           M+ A PGKTPI +L EYG +    PVY+  +++ Q H P FTFRVTVGD +CTG+G SKK
Sbjct: 1   MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 60

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
            AKH+AAE A+  LK  +        S  F+  D  +P+                     
Sbjct: 61  LAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------------------- 91

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
                   P    +++ NP+G+LQEL +  GWRLPEYT++QE GPAH++E+T  CR+E F
Sbjct: 92  --------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF 143

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           +E G G SKK AKRNAA K L +   +             ++H S      L  +     
Sbjct: 144 METGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS------LTNVVGHSL 186

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTW SLRNS GEKI  L+      L        ++LSE+++EQ F+++YLDI+ELS +G
Sbjct: 187 GCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANG 243

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
             QCL ELST P TVCHGS  +   A+ +AA  ALQYLKI+A  K
Sbjct: 244 QYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288


>gi|213417911 protein kinase, interferon-inducible double stranded
           RNA dependent activator isoform 2 [Homo sapiens]
          Length = 302

 Score =  258 bits (658), Expect = 7e-69
 Identities = 147/345 (42%), Positives = 195/345 (56%), Gaps = 57/345 (16%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           M+ A PGKTPI +L EYG +    PVY+  +++ Q H P FTFRVTVGD +CTG+G SKK
Sbjct: 15  MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 74

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
            AKH+AAE A+  LK  +        S  F+  D  +P+                     
Sbjct: 75  LAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------------------- 105

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
                   P    +++ NP+G+LQEL +  GWRLPEYT++QE GPAH++E+T  CR+E F
Sbjct: 106 --------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF 157

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           +E G G SKK AKRNAA K L +   +             ++H S      L  +     
Sbjct: 158 METGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS------LTNVVGHSL 200

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTW SLRNS GEKI  L+      L        ++LSE+++EQ F+++YLDI+ELS +G
Sbjct: 201 GCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANG 257

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
             QCL ELST P TVCHGS  +   A+ +AA  ALQYLKI+A  K
Sbjct: 258 QYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302


>gi|4505581 protein kinase, interferon-inducible double stranded RNA
           dependent activator isoform 1 [Homo sapiens]
          Length = 313

 Score =  258 bits (658), Expect = 7e-69
 Identities = 147/345 (42%), Positives = 195/345 (56%), Gaps = 57/345 (16%)

Query: 1   MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
           M+ A PGKTPI +L EYG +    PVY+  +++ Q H P FTFRVTVGD +CTG+G SKK
Sbjct: 26  MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 85

Query: 61  AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
            AKH+AAE A+  LK  +        S  F+  D  +P+                     
Sbjct: 86  LAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------------------- 116

Query: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
                   P    +++ NP+G+LQEL +  GWRLPEYT++QE GPAH++E+T  CR+E F
Sbjct: 117 --------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF 168

Query: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
           +E G G SKK AKRNAA K L +   +             ++H S      L  +     
Sbjct: 169 METGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS------LTNVVGHSL 211

Query: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
           GCTW SLRNS GEKI  L+      L        ++LSE+++EQ F+++YLDI+ELS +G
Sbjct: 212 GCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANG 268

Query: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
             QCL ELST P TVCHGS  +   A+ +AA  ALQYLKI+A  K
Sbjct: 269 QYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313


>gi|7657625 staufen homolog 2 [Homo sapiens]
          Length = 479

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 31/198 (15%)

Query: 8   KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAA 67
           K+ ISL+ E   +      ++++K  G  H  +F  RV+VG+ S  G+G SKK +K +AA
Sbjct: 174 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAA 233

Query: 68  EVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQ 127
              L+ LK                     LP  +PV          P +   + P   ++
Sbjct: 234 TTVLQELK--------------------KLPP-LPVVEK-------PKLFFKKRPKTIVK 265

Query: 128 PPVSPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG 186
               P+  +  NP+  L ++   K  + P+Y +  E G   R+EF M  +V   +  G+G
Sbjct: 266 --AGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTG 323

Query: 187 TSKKLAKRNAAAKMLLRV 204
            +KK+AK+NAA  MLL++
Sbjct: 324 PNKKIAKKNAAEAMLLQL 341



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 41  FTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPED 100
           F  ++TVG+    G+G +++AA+H AA  AL+ L+   + E + ++  S   +D     +
Sbjct: 114 FYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDAN 173

Query: 101 IPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVT 160
                  +  + V  + L R+ P+  +                               V 
Sbjct: 174 ------KSEISLVFEIALKRNMPVSFE-------------------------------VI 196

Query: 161 QESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
           +ESGP H K F     V  F   G G SKKL+K+ AA  +L  +  +P
Sbjct: 197 KESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLP 244



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+   TG GP+KK AK  
Sbjct: 273 GMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKN 332

Query: 66  AAEVALKHL--KGGSMLEPALE 85
           AAE  L  L  K  + L+  LE
Sbjct: 333 AAEAMLLQLGYKASTNLQDQLE 354


>gi|82659089 staufen isoform a [Homo sapiens]
          Length = 496

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)

Query: 5   NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKH 64
           N  K+ IS + E   +      +++ +  G  H  NF  +V+VG+    G+G SKK +K 
Sbjct: 99  NLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKK 158

Query: 65  KAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPM 124
            AA   L+ LK                         +P   A     P    +  ++ P+
Sbjct: 159 NAAIAVLEELK------------------------KLPPLPAVERVKPR---IKKKTKPI 191

Query: 125 ELQPPVSPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
            ++P  SP+  +  NP+  L ++   K  + PEYT+  E G   R+EF M  +V      
Sbjct: 192 -VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAE 250

Query: 184 GSGTSKKLAKRNAAAKML 201
           G+GT+KK+AKRNAA  ML
Sbjct: 251 GTGTNKKVAKRNAAENML 268



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 55/213 (25%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
           GK P+    +  +R+  T  Y++    G A+ P + +            ++VG     G+
Sbjct: 4   GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60

Query: 56  GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
           G +++AAKH AA  AL+ L+   + E  LE +   S  ++    +I         + V  
Sbjct: 61  GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110

Query: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
           + L R+ P+  +                               V +ESGP H K F    
Sbjct: 111 IALKRNLPVNFE-------------------------------VARESGPPHMKNFVTKV 139

Query: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
            V  F+  G G SKK++K+NAA  +L  +  +P
Sbjct: 140 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 172



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+ +  G G +KK AK  
Sbjct: 203 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 262

Query: 66  AAEVALKHL 74
           AAE  L+ L
Sbjct: 263 AAENMLEIL 271



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 277 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 336
           L  LS  Q F V Y D  + + +     L+  S+QP  + HG     E+    AA   L+
Sbjct: 412 LDYLSRVQGFQVEYKDFPKNNKNEFVS-LINCSSQPPLISHGIGKDVESCHDMAALNILK 470

Query: 337 YL 338
            L
Sbjct: 471 LL 472


>gi|82659087 staufen isoform b [Homo sapiens]
          Length = 577

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)

Query: 5   NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKH 64
           N  K+ IS + E   +      +++ +  G  H  NF  +V+VG+    G+G SKK +K 
Sbjct: 180 NLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKK 239

Query: 65  KAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPM 124
            AA   L+ LK                         +P   A     P    +  ++ P+
Sbjct: 240 NAAIAVLEELK------------------------KLPPLPAVERVKPR---IKKKTKPI 272

Query: 125 ELQPPVSPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
            ++P  SP+  +  NP+  L ++   K  + PEYT+  E G   R+EF M  +V      
Sbjct: 273 -VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAE 331

Query: 184 GSGTSKKLAKRNAAAKML 201
           G+GT+KK+AKRNAA  ML
Sbjct: 332 GTGTNKKVAKRNAAENML 349



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 64/229 (27%)

Query: 3   AANPGKTPISLLQEYGTRIGKTPVYDLL------------KAEGQAHQPNFTF------- 43
           AA    TP   L     ++GK P+Y  +               G A+ P + +       
Sbjct: 66  AAAESITPTVELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPL 125

Query: 44  ----RVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE 99
                ++VG     G+G +++AAKH AA  AL+ L+   + E  LE +   S  ++    
Sbjct: 126 LYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKS 184

Query: 100 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV 159
           +I         + V  + L R+ P+  +                               V
Sbjct: 185 EI---------SQVFEIALKRNLPVNFE-------------------------------V 204

Query: 160 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
            +ESGP H K F     V  F+  G G SKK++K+NAA  +L  +  +P
Sbjct: 205 ARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 253



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+ +  G G +KK AK  
Sbjct: 284 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 343

Query: 66  AAEVALKHL 74
           AAE  L+ L
Sbjct: 344 AAENMLEIL 352



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 277 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 336
           L  LS  Q F V Y D  + + +     L+  S+QP  + HG     E+    AA   L+
Sbjct: 493 LDYLSRVQGFQVEYKDFPKNNKNEFVS-LINCSSQPPLISHGIGKDVESCHDMAALNILK 551

Query: 337 YL 338
            L
Sbjct: 552 LL 553


>gi|82659085 staufen isoform a [Homo sapiens]
          Length = 496

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)

Query: 5   NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKH 64
           N  K+ IS + E   +      +++ +  G  H  NF  +V+VG+    G+G SKK +K 
Sbjct: 99  NLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKK 158

Query: 65  KAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPM 124
            AA   L+ LK                         +P   A     P    +  ++ P+
Sbjct: 159 NAAIAVLEELK------------------------KLPPLPAVERVKPR---IKKKTKPI 191

Query: 125 ELQPPVSPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
            ++P  SP+  +  NP+  L ++   K  + PEYT+  E G   R+EF M  +V      
Sbjct: 192 -VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAE 250

Query: 184 GSGTSKKLAKRNAAAKML 201
           G+GT+KK+AKRNAA  ML
Sbjct: 251 GTGTNKKVAKRNAAENML 268



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 55/213 (25%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
           GK P+    +  +R+  T  Y++    G A+ P + +            ++VG     G+
Sbjct: 4   GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60

Query: 56  GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
           G +++AAKH AA  AL+ L+   + E  LE +   S  ++    +I         + V  
Sbjct: 61  GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110

Query: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
           + L R+ P+  +                               V +ESGP H K F    
Sbjct: 111 IALKRNLPVNFE-------------------------------VARESGPPHMKNFVTKV 139

Query: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
            V  F+  G G SKK++K+NAA  +L  +  +P
Sbjct: 140 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 172



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+ +  G G +KK AK  
Sbjct: 203 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 262

Query: 66  AAEVALKHL 74
           AAE  L+ L
Sbjct: 263 AAENMLEIL 271



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 277 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 336
           L  LS  Q F V Y D  + + +     L+  S+QP  + HG     E+    AA   L+
Sbjct: 412 LDYLSRVQGFQVEYKDFPKNNKNEFVS-LINCSSQPPLISHGIGKDVESCHDMAALNILK 470

Query: 337 YL 338
            L
Sbjct: 471 LL 472


>gi|82659083 staufen isoform a [Homo sapiens]
          Length = 496

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)

Query: 5   NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKH 64
           N  K+ IS + E   +      +++ +  G  H  NF  +V+VG+    G+G SKK +K 
Sbjct: 99  NLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKK 158

Query: 65  KAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPM 124
            AA   L+ LK                         +P   A     P    +  ++ P+
Sbjct: 159 NAAIAVLEELK------------------------KLPPLPAVERVKPR---IKKKTKPI 191

Query: 125 ELQPPVSPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI 183
            ++P  SP+  +  NP+  L ++   K  + PEYT+  E G   R+EF M  +V      
Sbjct: 192 -VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAE 250

Query: 184 GSGTSKKLAKRNAAAKML 201
           G+GT+KK+AKRNAA  ML
Sbjct: 251 GTGTNKKVAKRNAAENML 268



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 55/213 (25%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
           GK P+    +  +R+  T  Y++    G A+ P + +            ++VG     G+
Sbjct: 4   GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60

Query: 56  GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
           G +++AAKH AA  AL+ L+   + E  LE +   S  ++    +I         + V  
Sbjct: 61  GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110

Query: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
           + L R+ P+  +                               V +ESGP H K F    
Sbjct: 111 IALKRNLPVNFE-------------------------------VARESGPPHMKNFVTKV 139

Query: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
            V  F+  G G SKK++K+NAA  +L  +  +P
Sbjct: 140 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 172



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+ +  G G +KK AK  
Sbjct: 203 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 262

Query: 66  AAEVALKHL 74
           AAE  L+ L
Sbjct: 263 AAENMLEIL 271



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 277 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 336
           L  LS  Q F V Y D  + + +     L+  S+QP  + HG     E+    AA   L+
Sbjct: 412 LDYLSRVQGFQVEYKDFPKNNKNEFVS-LINCSSQPPLISHGIGKDVESCHDMAALNILK 470

Query: 337 YL 338
            L
Sbjct: 471 LL 472


>gi|82659091 staufen isoform c [Homo sapiens]
          Length = 502

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 29/192 (15%)

Query: 11  ISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA 70
           I+L +         P+  + +  G  H  NF  +V+VG+    G+G SKK +K  AA   
Sbjct: 111 IALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAV 170

Query: 71  LKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPV 130
           L+ LK                         +P   A     P    +  ++ P+ ++P  
Sbjct: 171 LEELK------------------------KLPPLPAVERVKPR---IKKKTKPI-VKPQT 202

Query: 131 SPQQSE-CNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSK 189
           SP+  +  NP+  L ++   K  + PEYT+  E G   R+EF M  +V      G+GT+K
Sbjct: 203 SPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNK 262

Query: 190 KLAKRNAAAKML 201
           K+AKRNAA  ML
Sbjct: 263 KVAKRNAAENML 274



 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 49/213 (23%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTF-----------RVTVGDTSCTGQ 55
           GK P+    +  +R+  T  Y++    G A+ P + +            ++VG     G+
Sbjct: 4   GKKPMYKPVDPYSRMQSTYNYNM---RGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK 60

Query: 56  GPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPS 115
           G +++AAKH AA  AL+ L+   + E  LE +   S  ++    +I         + V  
Sbjct: 61  GKTRQAAKHDAAAKALRILQNEPLPE-RLEVNGRESEEENLNKSEI---------SQVFE 110

Query: 116 VVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTC 175
           + L R+ P+  +                           P   V +ESGP H K F    
Sbjct: 111 IALKRNLPVNFES-------------------------FPLKQVARESGPPHMKNFVTKV 145

Query: 176 RVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 208
            V  F+  G G SKK++K+NAA  +L  +  +P
Sbjct: 146 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLP 178



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 7   GKTPIS-LLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHK 65
           G  PIS L Q    +  K P Y LL   G   +  F  +V VG+ +  G G +KK AK  
Sbjct: 209 GINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRN 268

Query: 66  AAEVALKHL 74
           AAE  L+ L
Sbjct: 269 AAENMLEIL 277



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 277 LSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQ 336
           L  LS  Q F V Y D  + + +     L+  S+QP  + HG     E+    AA   L+
Sbjct: 418 LDYLSRVQGFQVEYKDFPKNNKNEFVS-LINCSSQPPLISHGIGKDVESCHDMAALNILK 476

Query: 337 YL 338
            L
Sbjct: 477 LL 478


>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
           sapiens]
          Length = 674

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 67/227 (29%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALK-----------HLK 75
           Y LL   G  H P F   V V      G GP+KK AK  AAE AL+           HL 
Sbjct: 95  YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA 154

Query: 76  GGSMLEPALEDSSS--------FSPLDSSLPEDIPVFTA-------------AAAATPVP 114
            G  L    + +S         F+  ++    + P +               + +A+PVP
Sbjct: 155 MGRTLSVNTDFTSDQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVP 214

Query: 115 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 174
           + +    PP+ + PP  P   + NPV  L EL  + G +   Y    ESG +H K F M+
Sbjct: 215 ASL--AQPPLPVLPPFPPPSGK-NPVMILNEL--RPGLK---YDFLSESGESHAKSFVMS 266

Query: 175 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDD 221
             V+     GSG +KKLAK  AA   L  +  + LD     +  P +
Sbjct: 267 VVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSE 313



 Score = 38.1 bits (87), Expect = 0.012
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +YT+  ++GP H   F M+  V   +  GSG +KK AK +AA K L
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139


>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
           sapiens]
          Length = 714

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 67/227 (29%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALK-----------HLK 75
           Y LL   G  H P F   V V      G GP+KK AK  AAE AL+           HL 
Sbjct: 95  YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA 154

Query: 76  GGSMLEPALEDSSS--------FSPLDSSLPEDIPVFTA-------------AAAATPVP 114
            G  L    + +S         F+  ++    + P +               + +A+PVP
Sbjct: 155 MGRTLSVNTDFTSDQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVP 214

Query: 115 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 174
           + +    PP+ + PP  P   + NPV  L EL  + G +   Y    ESG +H K F M+
Sbjct: 215 ASL--AQPPLPVLPPFPPPSGK-NPVMILNEL--RPGLK---YDFLSESGESHAKSFVMS 266

Query: 175 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDD 221
             V+     GSG +KKLAK  AA   L  +  + LD     +  P +
Sbjct: 267 VVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSE 313



 Score = 38.1 bits (87), Expect = 0.012
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +YT+  ++GP H   F M+  V   +  GSG +KK AK +AA K L
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139


>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
           sapiens]
          Length = 741

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 67/227 (29%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALK-----------HLK 75
           Y LL   G  H P F   V V      G GP+KK AK  AAE AL+           HL 
Sbjct: 95  YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA 154

Query: 76  GGSMLEPALEDSSS--------FSPLDSSLPEDIPVFTA-------------AAAATPVP 114
            G  L    + +S         F+  ++    + P +               + +A+PVP
Sbjct: 155 MGRTLSVNTDFTSDQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVP 214

Query: 115 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 174
           + +    PP+ + PP  P   + NPV  L EL  + G +   Y    ESG +H K F M+
Sbjct: 215 ASL--AQPPLPVLPPFPPPSGK-NPVMILNEL--RPGLK---YDFLSESGESHAKSFVMS 266

Query: 175 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDD 221
             V+     GSG +KKLAK  AA   L  +  + LD     +  P +
Sbjct: 267 VVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSE 313



 Score = 38.1 bits (87), Expect = 0.012
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +YT+  ++GP H   F M+  V   +  GSG +KK AK +AA K L
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139


>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
           sapiens]
          Length = 701

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 67/227 (29%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALK-----------HLK 75
           Y LL   G  H P F   V V      G GP+KK AK  AAE AL+           HL 
Sbjct: 95  YTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA 154

Query: 76  GGSMLEPALEDSSS--------FSPLDSSLPEDIPVFTA-------------AAAATPVP 114
            G  L    + +S         F+  ++    + P +               + +A+PVP
Sbjct: 155 MGRTLSVNTDFTSDQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVP 214

Query: 115 SVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMT 174
           + +    PP+ + PP  P   + NPV  L EL  + G +   Y    ESG +H K F M+
Sbjct: 215 ASL--AQPPLPVLPPFPPPSGK-NPVMILNEL--RPGLK---YDFLSESGESHAKSFVMS 266

Query: 175 CRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDD 221
             V+     GSG +KKLAK  AA   L  +  + LD     +  P +
Sbjct: 267 VVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSE 313



 Score = 38.1 bits (87), Expect = 0.012
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +YT+  ++GP H   F M+  V   +  GSG +KK AK +AA K L
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139


>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
           sapiens]
          Length = 931

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 33/199 (16%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVG-DTSCTGQGPSKKAAKHK 65
           GK+P++ L E   ++G +  + LL  EG AH+P F + V VG  T  +   PSKK AK  
Sbjct: 317 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 66  AAEVALKHLKGGSMLEPALED------SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLT 119
           AAE A+K L G +    A ++      S S   L+S +P  +           +  +V  
Sbjct: 377 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV---------RKIGELV-- 425

Query: 120 RSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV-E 178
                        +    NPVG L E     G+   E+ +  +SGP H  +F    +V  
Sbjct: 426 -------------RYLNTNPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGG 471

Query: 179 RFIEIGSGTSKKLAKRNAA 197
           R+       SKK  K+ AA
Sbjct: 472 RWFPAVCAHSKKQGKQEAA 490



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 8   KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKA 66
           K PIS L EY     +T  +++++  G  H+P F F+V + G      +  SKK AK  A
Sbjct: 207 KNPISGLLEYAQFASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDA 266

Query: 67  AEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL 126
           A  A+  L     LE A    S  S   S    +      A + TP PS     S     
Sbjct: 267 AMKAMTIL-----LEEAKAKDSGKSEESSHYSTEKESEKTAESQTPTPSATSFFSGK--- 318

Query: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV--ERFIEIG 184
                      +PV  L E + + G    E+ +  + GPAH  +F     V  + F  + 
Sbjct: 319 -----------SPVTTLLECMHKLG-NSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV- 365

Query: 185 SGTSKKLAKRNAAAKMLLRVH 205
           S  SKK+AK+ AA + +  +H
Sbjct: 366 SAPSKKVAKQMAAEEAMKALH 386



 Score = 36.2 bits (82), Expect = 0.044
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 10  PISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 68
           P+  L EY    G    + L+   G  H+P F ++  VG          SKK  K +AA+
Sbjct: 432 PVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAAD 491

Query: 69  VALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQP 128
            AL+ L G    E    +   F+       E  PV  A+   T    ++L+RSP  E QP
Sbjct: 492 AALRVLIG----ENEKAERMGFT-------EVTPVTGASLRRT---MLLLSRSP--EAQP 535

Query: 129 PVSP 132
              P
Sbjct: 536 KTLP 539


>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
           sapiens]
          Length = 1200

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 33/199 (16%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVG-DTSCTGQGPSKKAAKHK 65
           GK+P++ L E   ++G +  + LL  EG AH+P F + V VG  T  +   PSKK AK  
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 66  AAEVALKHLKGGSMLEPALED------SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLT 119
           AAE A+K L G +    A ++      S S   L+S +P  +           +  +V  
Sbjct: 672 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV---------RKIGELV-- 720

Query: 120 RSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV-E 178
                        +    NPVG L E     G+   E+ +  +SGP H  +F    +V  
Sbjct: 721 -------------RYLNTNPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGG 766

Query: 179 RFIEIGSGTSKKLAKRNAA 197
           R+       SKK  K+ AA
Sbjct: 767 RWFPAVCAHSKKQGKQEAA 785



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 8   KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKA 66
           K PIS L EY     +T  +++++  G  H+P F F+V + G      +  SKK AK  A
Sbjct: 502 KNPISGLLEYAQFASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDA 561

Query: 67  AEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL 126
           A  A+  L     LE A    S  S   S    +      A + TP PS     S     
Sbjct: 562 AMKAMTIL-----LEEAKAKDSGKSEESSHYSTEKESEKTAESQTPTPSATSFFSGK--- 613

Query: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV--ERFIEIG 184
                      +PV  L E + + G    E+ +  + GPAH  +F     V  + F  + 
Sbjct: 614 -----------SPVTTLLECMHKLG-NSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV- 660

Query: 185 SGTSKKLAKRNAAAKMLLRVH 205
           S  SKK+AK+ AA + +  +H
Sbjct: 661 SAPSKKVAKQMAAEEAMKALH 681



 Score = 35.0 bits (79), Expect = 0.098
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 10  PISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 68
           P+  L EY    G    + L+   G  H+P F ++  VG          SKK  K +AA+
Sbjct: 727 PVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAAD 786

Query: 69  VALKHLKG 76
            AL+ L G
Sbjct: 787 AALRVLIG 794


>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
           sapiens]
          Length = 1226

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 33/199 (16%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVG-DTSCTGQGPSKKAAKHK 65
           GK+P++ L E   ++G +  + LL  EG AH+P F + V VG  T  +   PSKK AK  
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 66  AAEVALKHLKGGSMLEPALED------SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLT 119
           AAE A+K L G +    A ++      S S   L+S +P  +           +  +V  
Sbjct: 672 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKV---------RKIGELV-- 720

Query: 120 RSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV-E 178
                        +    NPVG L E     G+   E+ +  +SGP H  +F    +V  
Sbjct: 721 -------------RYLNTNPVGGLLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGG 766

Query: 179 RFIEIGSGTSKKLAKRNAA 197
           R+       SKK  K+ AA
Sbjct: 767 RWFPAVCAHSKKQGKQEAA 785



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 8   KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKA 66
           K PIS L EY     +T  +++++  G  H+P F F+V + G      +  SKK AK  A
Sbjct: 502 KNPISGLLEYAQFASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDA 561

Query: 67  AEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL 126
           A  A+  L     LE A    S  S   S    +      A + TP PS     S     
Sbjct: 562 AMKAMTIL-----LEEAKAKDSGKSEESSHYSTEKESEKTAESQTPTPSATSFFSGK--- 613

Query: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV--ERFIEIG 184
                      +PV  L E + + G    E+ +  + GPAH  +F     V  + F  + 
Sbjct: 614 -----------SPVTTLLECMHKLG-NSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV- 660

Query: 185 SGTSKKLAKRNAAAKMLLRVH 205
           S  SKK+AK+ AA + +  +H
Sbjct: 661 SAPSKKVAKQMAAEEAMKALH 681



 Score = 36.2 bits (82), Expect = 0.044
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 10  PISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 68
           P+  L EY    G    + L+   G  H+P F ++  VG          SKK  K +AA+
Sbjct: 727 PVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAAD 786

Query: 69  VALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQP 128
            AL+ L G    E    +   F+       E  PV  A+   T    ++L+RSP  E QP
Sbjct: 787 AALRVLIG----ENEKAERMGFT-------EVTPVTGASLRRT---MLLLSRSP--EAQP 830

Query: 129 PVSP 132
              P
Sbjct: 831 KTLP 834


>gi|21361745 spermatid perinuclear RNA binding protein [Homo
           sapiens]
          Length = 672

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 9/217 (4%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y LL   G  H P FT  V V  T+    GPSKK AK   A   L+ +   +  +  +E 
Sbjct: 404 YKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIEC 463

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQEL 146
            SS    D+    +  V + ++  T   +   + +  +  Q P+     + NPV  L E 
Sbjct: 464 MSSDEKSDNESKNE-TVSSNSSNNTGNSTTETSSTLEVRTQGPILTASGK-NPVMELNE- 520

Query: 147 VVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHT 206
             ++G +   Y +  E+G +H K F M   V+     G+G +KK+AK +AA   L ++ +
Sbjct: 521 -KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFS 576

Query: 207 VPLDARDGNE--VEPDDDHFSIGVGSRLDGLRNRGPG 241
            P  A +  +  +       +  V + +  +R RG G
Sbjct: 577 GPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRG 613



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKA 66
           GK P+  L E    +     Y+L+   G +H   F   V V      G GP+KK AK  A
Sbjct: 511 GKNPVMELNEKRRGLK----YELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASA 566

Query: 67  AEVALKHLKGG 77
           A  AL+ L  G
Sbjct: 567 ALAALEKLFSG 577



 Score = 37.4 bits (85), Expect = 0.020
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  +SGP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 403 QYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVL 448


>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
           sapiens]
          Length = 1181

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 55/193 (28%), Positives = 78/193 (40%), Gaps = 40/193 (20%)

Query: 7   GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVG-DTSCTGQGPSKKAAKHK 65
           GK+P++ L E   ++G +  + LL  EG AH+P F + V VG  T  +   PSKK AK  
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 66  AAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPME 125
           AAE A+K L G +                +S+  D  V                      
Sbjct: 672 AAEEAMKALHGEA---------------TNSMASDNQVRKIGELV--------------- 701

Query: 126 LQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV-ERFIEIG 184
                  +    NPVG L E     G+   E+ +  +SGP H  +F    +V  R+    
Sbjct: 702 -------RYLNTNPVGGLLEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAV 753

Query: 185 SGTSKKLAKRNAA 197
              SKK  K+ AA
Sbjct: 754 CAHSKKQGKQEAA 766



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 8   KTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKA 66
           K PIS L EY     +T  +++++  G  H+P F F+V + G      +  SKK AK  A
Sbjct: 502 KNPISGLLEYAQFASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDA 561

Query: 67  AEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL 126
           A  A+  L     LE A    S  S   S    +      A + TP PS     S     
Sbjct: 562 AMKAMTIL-----LEEAKAKDSGKSEESSHYSTEKESEKTAESQTPTPSATSFFSGK--- 613

Query: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV--ERFIEIG 184
                      +PV  L E + + G    E+ +  + GPAH  +F     V  + F  + 
Sbjct: 614 -----------SPVTTLLECMHKLG-NSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSV- 660

Query: 185 SGTSKKLAKRNAAAKMLLRVH 205
           S  SKK+AK+ AA + +  +H
Sbjct: 661 SAPSKKVAKQMAAEEAMKALH 681



 Score = 35.0 bits (79), Expect = 0.098
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 10  PISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 68
           P+  L EY    G    + L+   G  H+P F ++  VG          SKK  K +AA+
Sbjct: 708 PVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAAD 767

Query: 69  VALKHLKG 76
            AL+ L G
Sbjct: 768 AALRVLIG 775


>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
           sapiens]
          Length = 690

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y L+   G  H P FT  V V   S    GPSKK AK   A   L+ +     L    E 
Sbjct: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL-----QPPVSPQQSECNPVG 141
             S    DS+  E+     A  A  PV   V T S          Q P+  +  + NPV 
Sbjct: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGK-NPVM 530

Query: 142 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
            L E   ++G +   Y +  E+G +H K F M   V+     G+G++KK+AK  AA   L
Sbjct: 531 ELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAAL 585

Query: 202 LRVHTVPLDARDGNE 216
            ++      A D N+
Sbjct: 586 EKLFPDTPLALDANK 600



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  ++GP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462


>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
           sapiens]
          Length = 702

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y L+   G  H P FT  V V   S    GPSKK AK   A   L+ +     L    E 
Sbjct: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL-----QPPVSPQQSECNPVG 141
             S    DS+  E+     A  A  PV   V T S          Q P+  +  + NPV 
Sbjct: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGK-NPVM 530

Query: 142 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
            L E   ++G +   Y +  E+G +H K F M   V+     G+G++KK+AK  AA   L
Sbjct: 531 ELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAAL 585

Query: 202 LRVHTVPLDARDGNE 216
            ++      A D N+
Sbjct: 586 EKLFPDTPLALDANK 600



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  ++GP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y L+   G  H P FT  V V   S    GPSKK AK   A   L+ +     L    E 
Sbjct: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMEL-----QPPVSPQQSECNPVG 141
             S    DS+  E+     A  A  PV   V T S          Q P+  +  + NPV 
Sbjct: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGK-NPVM 530

Query: 142 ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
            L E   ++G +   Y +  E+G +H K F M   V+     G+G++KK+AK  AA   L
Sbjct: 531 ELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAAL 585

Query: 202 LRVHTVPLDARDGNE 216
            ++      A D N+
Sbjct: 586 EKLFPDTPLALDANK 600



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  ++GP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462


>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
           sapiens]
          Length = 706

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y L+   G  H P FT  V V   S    GPSKK AK   A   L+ +     L    E 
Sbjct: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP---------MELQPPVSPQQSEC 137
             S    DS+  E+     A  A  PV   V T S           ++ Q P+  +  + 
Sbjct: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGK- 530

Query: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 197
           NPV  L E   ++G +   Y +  E+G +H K F M   V+     G+G++KK+AK  AA
Sbjct: 531 NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 585

Query: 198 AKMLLRVHTVPLDARDGNE 216
              L ++      A D N+
Sbjct: 586 LAALEKLFPDTPLALDANK 604



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  ++GP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
           Y L+   G  H P FT  V V   S    GPSKK AK   A   L+ +     L    E 
Sbjct: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473

Query: 87  SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP---------MELQPPVSPQQSEC 137
             S    DS+  E+     A  A  PV   V T S           ++ Q P+  +  + 
Sbjct: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGK- 530

Query: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 197
           NPV  L E   ++G +   Y +  E+G +H K F M   V+     G+G++KK+AK  AA
Sbjct: 531 NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 585

Query: 198 AKMLLRVHTVPLDARDGNE 216
              L ++      A D N+
Sbjct: 586 LAALEKLFPDTPLALDANK 604



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
           +Y +  ++GP H   FTM+  V+      SG SKK AK + A K+L
Sbjct: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462


>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
          Length = 739

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 30/208 (14%)

Query: 27  YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALK-----------HLK 75
           Y  +   G  H P F   V V   +  G GP+KK AK +AAE+AL+           HL 
Sbjct: 142 YRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELALRSFVQFPNACQAHLA 201

Query: 76  GGSMLEPALEDSSSFSPLDSSLPEDI-------------PVFTAAAAATPVPSVVLTRSP 122
            G    P  + +S  +    +L ++              P   A  +A      +L R+ 
Sbjct: 202 MGGGPGPGTDFTSDQADFPDTLFQEFEPPAPRPGLAGGRPGDAALLSAAYGRRRLLCRAL 261

Query: 123 PMELQPPVSP-QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI 181
            +    P +P    E NPV  L  L  + G R   Y    E      + F M   V+   
Sbjct: 262 DLVGPTPATPAAPGERNPVVLLNRL--RAGLR---YVCLAEPAERRARSFVMAVSVDGRT 316

Query: 182 EIGSGTSKKLAKRNAAAKMLLRVHTVPL 209
             GSG SKKLA+  AA   L  +  + +
Sbjct: 317 FEGSGRSKKLARGQAAQAALQELFDIQM 344



 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 197
           +Y    ++GP H   F +   V      G+G +KK AK  AA
Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAA 182


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 138  NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 171
            +PV AL E+  ++ W+ PE+ +  +SGP HRK F
Sbjct: 2371 HPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHF 2404


>gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens]
          Length = 773

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 5   NP-GKTPISLLQEYGTRIGKT-PVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKA 61
           NP GK+ + +L EY  R+ K  PVY+  + E  +    F   VT+ G T  +G   SKK 
Sbjct: 506 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKL 563

Query: 62  AKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 95
           AK+KAA   L+ L     +   ++ +S   P DS
Sbjct: 564 AKNKAARATLEIL-----IPDFVKQTSEEKPKDS 592


>gi|208431829 eukaryotic translation initiation factor 2-alpha
          kinase 2 isoform b [Homo sapiens]
          Length = 510

 Score = 35.4 bits (80), Expect = 0.075
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 14 LQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTV-GDTSCTGQGPSKKAAKHKAAEVALK 72
          L  Y  + G    Y  L   G  H   FTF+V + G     G+G SKK AK+ AA++A++
Sbjct: 14 LNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVE 73

Query: 73 HL 74
           L
Sbjct: 74 IL 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,242,364
Number of Sequences: 37866
Number of extensions: 675595
Number of successful extensions: 2229
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1935
Number of HSP's gapped (non-prelim): 290
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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