Guide to the Human Genome
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Name: TARBP2 Sequence: fasta or formatted (345aa) NCBI GI: 85068512
Description:

TAR RNA binding protein 2 isoform b

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [345aa] TAR RNA binding protein 2 isoform b
alt prot [366aa] TAR RNA binding protein 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         33           5
 C cysteine            2.9         10           2
 D aspartate           3.8         13           3
 E glutamate           7.2         25           2
 F phenylalanine       2.3          8           1
 G glycine             8.1         28           2
 H histidine           2.3          8           1
 I isoleucine          2.6          9           1
 K lysine              5.2         18           2
 L leucine            11.0         38           2
 M methionine          1.7          6           1
 N asparagine          2.0          7           1
 P proline             7.0         24           2
 Q glutamine           4.1         14           2
 R arginine            5.8         20           2
 S serine              9.6         33           3
 T threonine           6.1         21           2
 V valine              6.7         23           2
 W tryptophan          0.6          2           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TAR RNA binding protein 2 isoform b 
TARBP2                1.000   TAR RNA binding protein 2 isoform b 
TARBP2                1.000   TAR RNA binding protein 2 isoform a 
PRKRA                 0.351   protein kinase, interferon-inducible double strande...
PRKRA                 0.351   protein kinase, interferon-inducible double strande...
PRKRA                 0.351   protein kinase, interferon-inducible double stranded ...
STAU2                 0.081   staufen homolog 2 
STAU1                 0.081   staufen isoform a 
STAU1                 0.081   staufen isoform b 
STAU1                 0.081   staufen isoform a 
STAU1                 0.081   staufen isoform a 
STAU1                 0.078   staufen isoform c 
ADARB1                0.072   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.072   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.072   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.072   RNA-specific adenosine deaminase B1 isoform 1 
ADAR                  0.065   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.065   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.065   adenosine deaminase, RNA-specific isoform a 
STRBP                 0.053   spermatid perinuclear RNA binding protein 
ADAR                  0.053   adenosine deaminase, RNA-specific isoform c 
ILF3                  0.051   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.051   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.051   interleukin enhancer binding factor 3 isoform a [Hom...
ILF3                  0.050   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.050   interleukin enhancer binding factor 3 isoform d [Ho...
ADARB2                0.038   adenosine deaminase, RNA-specific, B2 
SON                   0.021   SON DNA-binding protein isoform F 
DGCR8                 0.021   DiGeorge syndrome critical region gene 8 
EIF2AK2               0.015   eukaryotic translation initiation factor 2-alpha ki...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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