Guide to the Human Genome
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Name: STAU1 Sequence: fasta or formatted (496aa) NCBI GI: 82659083
Description:

staufen isoform a

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [496aa] staufen isoform a
alt prot [577aa] staufen isoform b
alt mRNA [496aa] staufen isoform a
alt prot [502aa] staufen isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         33           3
 C cysteine            0.8          4           1
 D aspartate           2.2         11           1
 E glutamate           8.5         42           3
 F phenylalanine       3.2         16           2
 G glycine             7.7         38           2
 H histidine           2.0         10           2
 I isoleucine          4.0         20           1
 K lysine              9.7         48           3
 L leucine             7.7         38           2
 M methionine          2.6         13           1
 N asparagine          5.4         27           2
 P proline             9.1         45           2
 Q glutamine           5.0         25           2
 R arginine            5.0         25           3
 S serine              6.0         30           2
 T threonine           4.8         24           1
 V valine              6.7         33           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   staufen isoform a 
STAU1                 1.000   staufen isoform a 
STAU1                 1.000   staufen isoform b 
STAU1                 1.000   staufen isoform a 
STAU1                 0.993   staufen isoform c 
STAU2                 0.354   staufen homolog 2 
TARBP2                0.055   TAR RNA binding protein 2 isoform b 
TARBP2                0.055   TAR RNA binding protein 2 isoform a 
TARBP2                0.055   TAR RNA binding protein 2 isoform b 
PRKRA                 0.050   protein kinase, interferon-inducible double strande...
PRKRA                 0.050   protein kinase, interferon-inducible double strande...
PRKRA                 0.050   protein kinase, interferon-inducible double stranded ...
ILF3                  0.036   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.036   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.036   interleukin enhancer binding factor 3 isoform a [Hom...
ILF3                  0.036   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.036   interleukin enhancer binding factor 3 isoform d [Ho...
ADARB1                0.036   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.036   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.036   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.036   RNA-specific adenosine deaminase B1 isoform 1 
ADAR                  0.032   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.032   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.032   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.032   adenosine deaminase, RNA-specific isoform a 
STRBP                 0.032   spermatid perinuclear RNA binding protein 
EIF2AK2               0.022   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.022   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.022   eukaryotic translation initiation factor 2-alpha kina...
ADARB2                0.020   adenosine deaminase, RNA-specific, B2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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