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Search of human proteins with 7770075
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens] 226 3e-60
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens] 213 2e-56
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens] 189 3e-49
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens] 177 2e-45
gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor... 28 1.2
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 27 3.5
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 27 3.5
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 27 3.5
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 27 3.5
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 27 3.5
gi|39753957 lamina-associated polypeptide 1B [Homo sapiens] 27 3.5
gi|51036596 pyridine nucleotide-disulphide oxidoreductase domain... 26 7.8
gi|31543535 R3H domain containing 1 [Homo sapiens] 26 7.8
>gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens]
Length = 111
Score = 226 bits (576), Expect = 3e-60
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR 111
PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR 111
>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
Length = 129
Score = 213 bits (543), Expect = 2e-56
Identities = 110/129 (85%), Positives = 111/129 (86%), Gaps = 18/129 (13%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK------------------MAYERS 102
PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK +AYERS
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
Query: 103 AMQNYERRR 111
AMQNYERRR
Sbjct: 121 AMQNYERRR 129
>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
Length = 96
Score = 189 bits (481), Expect = 3e-49
Identities = 96/111 (86%), Positives = 96/111 (86%), Gaps = 15/111 (13%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR 111
PQQFFGLMGKRDA GHGQISHKMAYERSAMQNYERRR
Sbjct: 61 PQQFFGLMGKRDA---------------GHGQISHKMAYERSAMQNYERRR 96
>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
Length = 114
Score = 177 bits (448), Expect = 2e-45
Identities = 95/129 (73%), Positives = 96/129 (74%), Gaps = 33/129 (25%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK------------------MAYERS 102
PQQFFGLMGKRDA GHGQISHK +AYERS
Sbjct: 61 PQQFFGLMGKRDA---------------GHGQISHKRHKTDSFVGLMGKRALNSVAYERS 105
Query: 103 AMQNYERRR 111
AMQNYERRR
Sbjct: 106 AMQNYERRR 114
>gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor
[Homo sapiens]
Length = 1306
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 10 FFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRI 55
F +S + + ++ G D YW WY+S +++L EHL Q++
Sbjct: 207 FTALSNEAYKQD-GFTDTGAYWRSWYNSPTFEDDL----EHLYQQL 247
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|39753957 lamina-associated polypeptide 1B [Homo sapiens]
Length = 583
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 35 YDSDQIKEELPEPFEHLLQRIARRPKPQQ 63
+ SD KEE+ E +L R R+P+PQ+
Sbjct: 90 FRSDSAKEEVRESAYYLRSRQRRQPRPQE 118
>gi|51036596 pyridine nucleotide-disulphide oxidoreductase domain 1
[Homo sapiens]
Length = 500
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 67 LMGKRDADSSIEKQVALLKA----LYGHGQISHKMAYE 100
++G RD DS+ E Q L KA + G+G I+ ++ YE
Sbjct: 128 VLGIRDTDSAQEFQKQLTKAKRIMIIGNGGIALELVYE 165
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 37 SDQIKEELPEPFEHLLQRIARRPKPQQFFGLMGKRDADSSIEKQVALL 84
S+ + L E EH ++ +P Q FG GKR SS K V L
Sbjct: 35 SENYGKILVEKNEHCIENNIDLQRPLQSFGQTGKRSKSSSKLKLVRSL 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,965,307
Number of Sequences: 37866
Number of extensions: 164518
Number of successful extensions: 415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 13
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.