Guide to the Human Genome
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Name: LOC389137 Sequence: fasta or formatted (284aa) NCBI GI: 113414573
Description:

PREDICTED: similar to SVH protein isoform 2

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [253aa] PREDICTED: similar to SVH protein isoform 2
alt prot [253aa] PREDICTED: similar to SVH protein isoform 1
alt prot [284aa] PREDICTED: similar to SVH protein isoform 1
alt prot [253aa] PREDICTED: similar to SVH protein isoform 2
alt mRNA [284aa] PREDICTED: similar to SVH protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         21           2
 C cysteine            1.8          5           1
 D aspartate           4.9         14           2
 E glutamate           5.6         16           2
 F phenylalanine       2.8          8           2
 G glycine             7.4         21           2
 H histidine           3.5         10           2
 I isoleucine          8.1         23           2
 K lysine              5.3         15           1
 L leucine            13.7         39           3
 M methionine          1.1          3           1
 N asparagine          6.3         18           2
 P proline             2.1          6           1
 Q glutamine           4.2         12           1
 R arginine            4.6         13           3
 S serine              6.3         18           2
 T threonine           4.9         14           1
 V valine              7.0         20           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SVH protein isoform 2 
LOC389137             1.000   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.991   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.987   SVH protein isoform e 
ARMC10                0.963   SVH protein isoform b 
ARMC10                0.929   SVH protein isoform a 
LOC389137             0.852   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.852   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.845   PREDICTED: similar to SVH protein isoform 2 
ARMC10                0.748   SVH protein isoform d 
ARMC10                0.714   SVH protein isoform c 
ARMC10                0.680   SVH protein isoform f 
ARMCX1                0.355   armadillo repeat containing, X-linked 1 
ARMCX3                0.348   armadillo repeat containing, X-linked 3 
ARMCX3                0.348   armadillo repeat containing, X-linked 3 
ARMCX3                0.348   armadillo repeat containing, X-linked 3 
ARMCX2                0.329   ALEX2 protein 
ARMCX2                0.329   ALEX2 protein 
LOC100292655          0.269   PREDICTED: similar to armadillo repeat containing, ...
ARMCX5                0.166   armadillo repeat containing, X-linked 5 
GPRASP2               0.114   G protein-coupled receptor associated sorting protei...
GPRASP2               0.114   G protein-coupled receptor associated sorting protei...
GPRASP1               0.110   G protein-coupled receptor associated sorting prote...
GPRASP1               0.110   G protein-coupled receptor associated sorting prote...
GPRASP1               0.110   G protein-coupled receptor associated sorting prote...
BHLHB9                0.110   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.110   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.110   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.110   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.110   basic helix-loop-helix domain containing, class B, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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