Guide to the Human Genome
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Name: LOC389137 Sequence: fasta or formatted (253aa) NCBI GI: 113415138
Description:

PREDICTED: similar to SVH protein isoform 2

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [284aa] PREDICTED: similar to SVH protein isoform 2
alt mRNA [253aa] PREDICTED: similar to SVH protein isoform 1
alt prot [284aa] PREDICTED: similar to SVH protein isoform 1
alt prot [253aa] PREDICTED: similar to SVH protein isoform 2
alt prot [284aa] PREDICTED: similar to SVH protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         20           2
 C cysteine            2.0          5           1
 D aspartate           4.7         12           2
 E glutamate           6.3         16           2
 F phenylalanine       2.8          7           2
 G glycine             7.9         20           2
 H histidine           2.8          7           2
 I isoleucine          8.7         22           2
 K lysine              5.9         15           1
 L leucine            13.0         33           3
 M methionine          0.4          1           1
 N asparagine          6.3         16           2
 P proline             2.4          6           1
 Q glutamine           3.6          9           1
 R arginine            4.7         12           3
 S serine              6.7         17           2
 T threonine           4.0         10           1
 V valine              7.1         18           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SVH protein isoform 2 
LOC389137             1.000   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.989   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.964   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.964   PREDICTED: similar to SVH protein isoform 2 
ARMC10                0.956   SVH protein isoform e 
LOC389137             0.956   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.928   SVH protein isoform b 
ARMC10                0.890   SVH protein isoform a 
ARMC10                0.869   SVH protein isoform d 
ARMC10                0.841   SVH protein isoform f 
ARMC10                0.833   SVH protein isoform c 
ARMCX1                0.290   armadillo repeat containing, X-linked 1 
ARMCX3                0.271   armadillo repeat containing, X-linked 3 
ARMCX3                0.271   armadillo repeat containing, X-linked 3 
ARMCX3                0.271   armadillo repeat containing, X-linked 3 
ARMCX2                0.262   ALEX2 protein 
ARMCX2                0.262   ALEX2 protein 
LOC100292655          0.199   PREDICTED: similar to armadillo repeat containing, ...
ARMCX5                0.114   armadillo repeat containing, X-linked 5 
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.070   basic helix-loop-helix domain containing, class B, 9...
ARMCX6                0.059   armadillo repeat containing, X-linked 6 
ARMCX6                0.059   armadillo repeat containing, X-linked 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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