Guide to the Human Genome
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Name: SCAND1 Sequence: fasta or formatted (179aa) NCBI GI: 7706089
Description:

SCAN domain containing protein 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {179aa} SCAN domain containing protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.3         31           3
 C cysteine            0.6          1           1
 D aspartate           1.7          3           1
 E glutamate           9.5         17           1
 F phenylalanine       2.2          4           1
 G glycine             5.6         10           1
 H histidine           0.0          0           0
 I isoleucine          3.9          7           1
 K lysine              1.1          2           1
 L leucine             7.8         14           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            13.4         24           2
 Q glutamine           5.0          9           1
 R arginine           11.7         21           3
 S serine              7.8         14           3
 T threonine           4.5          8           1
 V valine              4.5          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SCAN domain containing protein 1 
SCAND1                1.000   SCAN domain containing protein 1 
ZNF498                0.206   zinc finger and SCAN domain containing 25 
ZSCAN29               0.193   zinc finger protein 690 
ZNF24                 0.190   zinc finger protein 24 
ZNF192                0.190   zinc finger protein 192 
ZSCAN20               0.190   zinc finger protein 31 
MZF1                  0.187   zinc finger protein 42 isoform 2 
MZF1                  0.187   zinc finger protein 42 isoform 1 
ZNF496                0.187   zinc finger protein 496 
ZNF396                0.187   zinc finger protein 396 
ZSCAN23               0.187   zinc finger protein 390 
ZKSCAN4               0.184   zinc finger with KRAB and SCAN domains 4 
ZKSCAN1               0.184   zinc finger protein 36 
ZNF397OS              0.184   zinc finger protein 397 opposite strand 
SCAND3                0.181   SCAN domain containing 3 
ZKSCAN3               0.181   zinc finger with KRAB and SCAN domains 3 
ZNF263                0.181   zinc finger protein 263 
ZSCAN12               0.181   zinc finger and SCAN domain containing 12 
ZNF274                0.181   zinc finger protein 274 isoform c 
ZNF274                0.181   zinc finger protein 274 isoform a 
ZNF323                0.181   zinc finger protein 323 
ZNF323                0.181   zinc finger protein 323 
ZNF323                0.181   zinc finger protein 323 
ZNF323                0.181   zinc finger protein 323 
ZNF274                0.178   zinc finger protein 274 isoform b 
ZNF174                0.178   zinc finger protein 174 isoform b 
ZNF174                0.178   zinc finger protein 174 isoform a 
ZNF394                0.178   zinc finger protein 394 
ZNF500                0.178   zinc finger protein 500 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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