BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|7705590 TP53RK binding protein [Homo sapiens] (175 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|7705590 TP53RK binding protein [Homo sapiens] 339 6e-94 gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 31 0.63 gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo... 31 0.63 gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 28 3.1 gi|70980549 programmed cell death 11 [Homo sapiens] 28 4.1 gi|126032350 protein kinase, DNA-activated, catalytic polypeptid... 28 5.3 gi|13654237 protein kinase, DNA-activated, catalytic polypeptide... 28 5.3 gi|113430845 PREDICTED: similar to protein kinase, DNA-activated... 28 5.3 gi|38373673 synaptonemal complex protein 2 [Homo sapiens] 28 5.3 gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens] 27 6.9 gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens] 27 6.9 gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 9.0 gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 9.0 gi|62526045 zinc finger protein 638 [Homo sapiens] 27 9.0 gi|21626468 zinc finger protein 638 [Homo sapiens] 27 9.0 >gi|7705590 TP53RK binding protein [Homo sapiens] Length = 175 Score = 339 bits (870), Expect = 6e-94 Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK Sbjct: 1 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60 Query: 61 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE Sbjct: 61 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120 Query: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL Sbjct: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175 >gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo sapiens] Length = 466 Score = 30.8 bits (68), Expect = 0.63 Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166 +++ VE Q S+K L N VK++Y L + + +LDA+I Sbjct: 10 VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54 >gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo sapiens] Length = 429 Score = 30.8 bits (68), Expect = 0.63 Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166 +++ VE Q S+K L N VK++Y L + + +LDA+I Sbjct: 10 VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54 >gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] Length = 2458 Score = 28.5 bits (62), Expect = 3.1 Identities = 15/39 (38%), Positives = 20/39 (51%) Query: 45 PTVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNL 83 PTVI+DPF+I + V Y K R L E+ N+ Sbjct: 1598 PTVIMDPFKIEESVRYMVMRYGSRLWKLRVLQAEVKINI 1636 >gi|70980549 programmed cell death 11 [Homo sapiens] Length = 1871 Score = 28.1 bits (61), Expect = 4.1 Identities = 12/36 (33%), Positives = 21/36 (58%) Query: 84 SPNNNISEALKKFGISANDTSILIVYIEEGEKQINQ 119 S +S+ KK G+S D S++ VY EG+++ + Sbjct: 1478 SEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEE 1513 >gi|126032350 protein kinase, DNA-activated, catalytic polypeptide isoform 2 [Homo sapiens] Length = 4097 Score = 27.7 bits (60), Expect = 5.3 Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149 S+ L + +D YI+ G + Q Y V HQ L L + +TE+++ Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142 Query: 150 KLSSQEESIGT 160 S++ ++ + Sbjct: 3143 SFISKQGNLSS 3153 >gi|13654237 protein kinase, DNA-activated, catalytic polypeptide isoform 1 [Homo sapiens] Length = 4128 Score = 27.7 bits (60), Expect = 5.3 Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149 S+ L + +D YI+ G + Q Y V HQ L L + +TE+++ Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142 Query: 150 KLSSQEESIGT 160 S++ ++ + Sbjct: 3143 SFISKQGNLSS 3153 >gi|113430845 PREDICTED: similar to protein kinase, DNA-activated, catalytic polypeptide [Homo sapiens] Length = 4096 Score = 27.7 bits (60), Expect = 5.3 Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149 S+ L + +D YI+ G + Q Y V HQ L L + +TE+++ Sbjct: 3082 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3141 Query: 150 KLSSQEESIGT 160 S++ ++ + Sbjct: 3142 SFISKQGNLSS 3152 >gi|38373673 synaptonemal complex protein 2 [Homo sapiens] Length = 1530 Score = 27.7 bits (60), Expect = 5.3 Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 91 EALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLK 134 E+++K GIS TS+ I++ G + + E IS V VSLK Sbjct: 395 ESIRKQGISVAKTSLHILFDASGSQILVPESQISPVGEELVSLK 438 >gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens] Length = 261 Score = 27.3 bits (59), Expect = 6.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160 H + L L E IT+V K+ L +QE ++GT Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150 >gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens] Length = 223 Score = 27.3 bits (59), Expect = 6.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160 H + L L E IT+V K+ L +QE ++GT Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150 >gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5 [Homo sapiens] Length = 6907 Score = 26.9 bits (58), Expect = 9.0 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%) Query: 65 YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107 Y++ +K+ S ++ F L +N ++KF + ++ LI Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874 Query: 108 VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144 V +E +K++ + + S + H L N+ E +N+ E Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909 >gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1 [Homo sapiens] Length = 6885 Score = 26.9 bits (58), Expect = 9.0 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%) Query: 65 YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107 Y++ +K+ S ++ F L +N ++KF + ++ LI Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874 Query: 108 VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144 V +E +K++ + + S + H L N+ E +N+ E Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909 >gi|62526045 zinc finger protein 638 [Homo sapiens] Length = 1978 Score = 26.9 bits (58), Expect = 9.0 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 126 VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166 ++G+Q+S+ PE MNI + + I+ K + E +I T+ D + Sbjct: 967 MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011 >gi|21626468 zinc finger protein 638 [Homo sapiens] Length = 1978 Score = 26.9 bits (58), Expect = 9.0 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 126 VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166 ++G+Q+S+ PE MNI + + I+ K + E +I T+ D + Sbjct: 967 MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,325,871 Number of Sequences: 37866 Number of extensions: 184274 Number of successful extensions: 517 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 506 Number of HSP's gapped (non-prelim): 15 length of query: 175 length of database: 18,247,518 effective HSP length: 95 effective length of query: 80 effective length of database: 14,650,248 effective search space: 1172019840 effective search space used: 1172019840 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.