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Search of human proteins with 7705590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705590 TP53RK binding protein [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705590 TP53RK binding protein [Homo sapiens] 339 6e-94
gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 31 0.63
gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo... 31 0.63
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 28 3.1
gi|70980549 programmed cell death 11 [Homo sapiens] 28 4.1
gi|126032350 protein kinase, DNA-activated, catalytic polypeptid... 28 5.3
gi|13654237 protein kinase, DNA-activated, catalytic polypeptide... 28 5.3
gi|113430845 PREDICTED: similar to protein kinase, DNA-activated... 28 5.3
gi|38373673 synaptonemal complex protein 2 [Homo sapiens] 28 5.3
gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens] 27 6.9
gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens] 27 6.9
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 9.0
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 9.0
gi|62526045 zinc finger protein 638 [Homo sapiens] 27 9.0
gi|21626468 zinc finger protein 638 [Homo sapiens] 27 9.0
>gi|7705590 TP53RK binding protein [Homo sapiens]
Length = 175
Score = 339 bits (870), Expect = 6e-94
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60
MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
Sbjct: 1 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60
Query: 61 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120
AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
Sbjct: 61 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120
Query: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175
YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
Sbjct: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175
>gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo
sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 0.63
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166
+++ VE Q S+K L N VK++Y L + + +LDA+I
Sbjct: 10 VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54
>gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo
sapiens]
Length = 429
Score = 30.8 bits (68), Expect = 0.63
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166
+++ VE Q S+K L N VK++Y L + + +LDA+I
Sbjct: 10 VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 45 PTVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNL 83
PTVI+DPF+I + V Y K R L E+ N+
Sbjct: 1598 PTVIMDPFKIEESVRYMVMRYGSRLWKLRVLQAEVKINI 1636
>gi|70980549 programmed cell death 11 [Homo sapiens]
Length = 1871
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 84 SPNNNISEALKKFGISANDTSILIVYIEEGEKQINQ 119
S +S+ KK G+S D S++ VY EG+++ +
Sbjct: 1478 SEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEE 1513
>gi|126032350 protein kinase, DNA-activated, catalytic polypeptide
isoform 2 [Homo sapiens]
Length = 4097
Score = 27.7 bits (60), Expect = 5.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
S+ L + +D YI+ G + Q Y V HQ L L + +TE+++
Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142
Query: 150 KLSSQEESIGT 160
S++ ++ +
Sbjct: 3143 SFISKQGNLSS 3153
>gi|13654237 protein kinase, DNA-activated, catalytic polypeptide
isoform 1 [Homo sapiens]
Length = 4128
Score = 27.7 bits (60), Expect = 5.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
S+ L + +D YI+ G + Q Y V HQ L L + +TE+++
Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142
Query: 150 KLSSQEESIGT 160
S++ ++ +
Sbjct: 3143 SFISKQGNLSS 3153
>gi|113430845 PREDICTED: similar to protein kinase, DNA-activated,
catalytic polypeptide [Homo sapiens]
Length = 4096
Score = 27.7 bits (60), Expect = 5.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 90 SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
S+ L + +D YI+ G + Q Y V HQ L L + +TE+++
Sbjct: 3082 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3141
Query: 150 KLSSQEESIGT 160
S++ ++ +
Sbjct: 3142 SFISKQGNLSS 3152
>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
Length = 1530
Score = 27.7 bits (60), Expect = 5.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 91 EALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLK 134
E+++K GIS TS+ I++ G + + E IS V VSLK
Sbjct: 395 ESIRKQGISVAKTSLHILFDASGSQILVPESQISPVGEELVSLK 438
>gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160
H + L L E IT+V K+ L +QE ++GT
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150
>gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens]
Length = 223
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160
H + L L E IT+V K+ L +QE ++GT
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 26.9 bits (58), Expect = 9.0
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 65 YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107
Y++ +K+ S ++ F L +N ++KF + ++ LI
Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874
Query: 108 VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144
V +E +K++ + + S + H L N+ E +N+ E
Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 26.9 bits (58), Expect = 9.0
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 65 YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107
Y++ +K+ S ++ F L +N ++KF + ++ LI
Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874
Query: 108 VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144
V +E +K++ + + S + H L N+ E +N+ E
Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 26.9 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 126 VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166
++G+Q+S+ PE MNI + + I+ K + E +I T+ D +
Sbjct: 967 MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 26.9 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 126 VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166
++G+Q+S+ PE MNI + + I+ K + E +I T+ D +
Sbjct: 967 MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,325,871
Number of Sequences: 37866
Number of extensions: 184274
Number of successful extensions: 517
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 15
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.