Guide to the Human Genome
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Search of human proteins with 7705590

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705590 TP53RK binding protein [Homo sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705590 TP53RK binding protein [Homo sapiens]                      339   6e-94
gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom...    31   0.63 
gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo...    31   0.63 
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]         28   3.1  
gi|70980549 programmed cell death 11 [Homo sapiens]                    28   4.1  
gi|126032350 protein kinase, DNA-activated, catalytic polypeptid...    28   5.3  
gi|13654237 protein kinase, DNA-activated, catalytic polypeptide...    28   5.3  
gi|113430845 PREDICTED: similar to protein kinase, DNA-activated...    28   5.3  
gi|38373673 synaptonemal complex protein 2 [Homo sapiens]              28   5.3  
gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens]            27   6.9  
gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens]           27   6.9  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    27   9.0  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    27   9.0  
gi|62526045 zinc finger protein 638 [Homo sapiens]                     27   9.0  
gi|21626468 zinc finger protein 638 [Homo sapiens]                     27   9.0  

>gi|7705590 TP53RK binding protein [Homo sapiens]
          Length = 175

 Score =  339 bits (870), Expect = 6e-94
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60
           MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
Sbjct: 1   MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK 60

Query: 61  AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120
           AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
Sbjct: 61  AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE 120

Query: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175
           YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
Sbjct: 121 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175


>gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo
           sapiens]
          Length = 466

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166
           +++ VE  Q S+K L    N   VK++Y L  + +    +LDA+I
Sbjct: 10  VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54


>gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo
           sapiens]
          Length = 429

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 122 LISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAII 166
           +++ VE  Q S+K L    N   VK++Y L  + +    +LDA+I
Sbjct: 10  VLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVI 54


>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
          Length = 2458

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 45   PTVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNL 83
            PTVI+DPF+I  +    V  Y     K R L  E+  N+
Sbjct: 1598 PTVIMDPFKIEESVRYMVMRYGSRLWKLRVLQAEVKINI 1636


>gi|70980549 programmed cell death 11 [Homo sapiens]
          Length = 1871

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 84   SPNNNISEALKKFGISANDTSILIVYIEEGEKQINQ 119
            S    +S+  KK G+S  D S++ VY  EG+++  +
Sbjct: 1478 SEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEE 1513


>gi|126032350 protein kinase, DNA-activated, catalytic polypeptide
            isoform 2 [Homo sapiens]
          Length = 4097

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 90   SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
            S+ L    +  +D      YI+ G +   Q Y    V  HQ  L  L  +  +TE+++  
Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142

Query: 150  KLSSQEESIGT 160
               S++ ++ +
Sbjct: 3143 SFISKQGNLSS 3153


>gi|13654237 protein kinase, DNA-activated, catalytic polypeptide
            isoform 1 [Homo sapiens]
          Length = 4128

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 90   SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
            S+ L    +  +D      YI+ G +   Q Y    V  HQ  L  L  +  +TE+++  
Sbjct: 3083 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3142

Query: 150  KLSSQEESIGT 160
               S++ ++ +
Sbjct: 3143 SFISKQGNLSS 3153


>gi|113430845 PREDICTED: similar to protein kinase, DNA-activated,
            catalytic polypeptide [Homo sapiens]
          Length = 4096

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 90   SEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIY 149
            S+ L    +  +D      YI+ G +   Q Y    V  HQ  L  L  +  +TE+++  
Sbjct: 3082 SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI 3141

Query: 150  KLSSQEESIGT 160
               S++ ++ +
Sbjct: 3142 SFISKQGNLSS 3152


>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
          Length = 1530

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 91  EALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLK 134
           E+++K GIS   TS+ I++   G + +  E  IS V    VSLK
Sbjct: 395 ESIRKQGISVAKTSLHILFDASGSQILVPESQISPVGEELVSLK 438


>gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens]
          Length = 261

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160
           H + L  L E   IT+V K+  L +QE ++GT
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150


>gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens]
          Length = 223

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 129 HQVSLKNLPEIMNITEVKKIYKLSSQEESIGT 160
           H + L  L E   IT+V K+  L +QE ++GT
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGT 150


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 65   YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107
            Y++  +K+   S ++ F L   +N    ++KF +   ++  LI                 
Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874

Query: 108  VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144
            V +E  +K++ +  + S +  H   L N+ E +N+ E
Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 65   YKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILI----------------- 107
            Y++  +K+   S ++ F L   +N    ++KF +   ++  LI                 
Sbjct: 2815 YQMLVLKSTQRSQQLEFKLEERSNFFAIIRKFQLMVQESETLIIPRVETAATEAELKHHH 2874

Query: 108  VYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITE 144
            V +E  +K++ +  + S +  H   L N+ E +N+ E
Sbjct: 2875 VTLEASQKELQE--IDSGISTHLQELTNIYEELNVFE 2909


>gi|62526045 zinc finger protein 638 [Homo sapiens]
          Length = 1978

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 126  VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166
            ++G+Q+S+   PE MNI + + I+    K +  E +I T+ D  +
Sbjct: 967  MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011


>gi|21626468 zinc finger protein 638 [Homo sapiens]
          Length = 1978

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 126  VEGHQVSLKNLPEIMNITEVKKIY----KLSSQEESIGTLLDAII 166
            ++G+Q+S+   PE MNI + + I+    K +  E +I T+ D  +
Sbjct: 967  MDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFV 1011


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,325,871
Number of Sequences: 37866
Number of extensions: 184274
Number of successful extensions: 517
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 15
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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