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Search of human proteins with 7705409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705409 HemK methyltransferase family member 1 [Homo
sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705409 HemK methyltransferase family member 1 [Homo sapiens] 689 0.0
gi|87159829 N-6 adenine-specific DNA methyltransferase 1 isoform... 51 2e-06
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 32 0.81
gi|118442825 methyltransferase like 6 [Homo sapiens] 32 1.1
gi|87159831 N-6 adenine-specific DNA methyltransferase 1 isoform... 31 1.4
gi|223556010 protein arginine methyltransferase 3 isoform 3 [Hom... 31 1.8
gi|223556008 protein arginine methyltransferase 3 isoform 2 [Hom... 31 1.8
gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo... 31 1.8
gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens] 31 1.8
gi|122937259 solute carrier family 45, member 4 [Homo sapiens] 30 3.1
gi|93141204 methyltransferase like 2B [Homo sapiens] 30 4.0
gi|165932358 methyltransferase like 2A [Homo sapiens] 30 4.0
gi|7657198 dimethyladenosine transferase [Homo sapiens] 30 4.0
gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens] 29 5.2
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.8
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.8
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.8
gi|229892328 IQ motif containing C isoform 1 [Homo sapiens] 28 8.9
gi|11321561 hemopexin precursor [Homo sapiens] 28 8.9
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 28 8.9
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 28 8.9
gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Hom... 28 8.9
>gi|7705409 HemK methyltransferase family member 1 [Homo sapiens]
Length = 338
Score = 689 bits (1778), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEA 60
MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEA
Sbjct: 1 MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEA 60
Query: 61 RESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQ 120
RESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQ
Sbjct: 61 RESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQ 120
Query: 121 GLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQ 180
GLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQ
Sbjct: 121 GLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQ 180
Query: 181 LPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSNP 240
LPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSNP
Sbjct: 181 LPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSNP 240
Query: 241 PYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRLLKDSGSIFLEVDPRHP 300
PYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRLLKDSGSIFLEVDPRHP
Sbjct: 241 PYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRLLKDSGSIFLEVDPRHP 300
Query: 301 ELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP 338
ELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP
Sbjct: 301 ELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP 338
>gi|87159829 N-6 adenine-specific DNA methyltransferase 1 isoform 1
[Homo sapiens]
Length = 214
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 159 GSPLILEVGCGSGAISLSLLSQL-PQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHL 217
G + LEVG GSG +S L S + PQ+ + D A + T E A+ ++ + I L
Sbjct: 45 GVEICLEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDL 104
Query: 218 DMTSERSWTHLPWGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHI 277
T +DL+V NPPYV E + S+ AA GG+ G +++
Sbjct: 105 VKGLLPRLTE----KVDLLVFNPPYVVTPPQE-----VGSHGIEAAWAGGKNGREVMDRF 155
Query: 278 LALAPRLLKDSGSIFL-EVDPRHPELVSSWLQSR 310
L P LL G +L + +PE + ++++
Sbjct: 156 FPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTK 189
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 32.0 bits (71), Expect = 0.81
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
Query: 251 LAPEIRSYEDPAALDGG--------------EEGMDIITHILALAPRLLKDSGSIFLEVD 296
LAP + + EDP+A GG EEG ++IT I PRL K + +
Sbjct: 9 LAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYK---VLKTHIS 65
Query: 297 PRHPELVSSWLQS 309
++ EL S+ LQ+
Sbjct: 66 SQNSELSSAALQA 78
>gi|118442825 methyltransferase like 6 [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 163 ILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSE 222
+LE GCG G LL + P A D AI +N L +R + D+T +
Sbjct: 83 MLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNP--LYDTERCKVFQCDLTKD 140
Query: 223 RSWTHLPWGPMDLIV 237
H+P +D+++
Sbjct: 141 DLLDHVPPESVDVVM 155
>gi|87159831 N-6 adenine-specific DNA methyltransferase 1 isoform 2
[Homo sapiens]
Length = 186
Score = 31.2 bits (69), Expect = 1.4
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 39/154 (25%)
Query: 159 GSPLILEVGCGSGAISLSLLSQL-PQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHL 217
G + LEVG GSG +S L S + PQ+ + D A + T E A+ ++ + I L
Sbjct: 45 GVEICLEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDL 104
Query: 218 DMTSERSWTHLPWGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHI 277
+ S+ AA GG+ G +++
Sbjct: 105 -------------------------------------VGSHGIEAAWAGGKNGREVMDRF 127
Query: 278 LALAPRLLKDSGSIFL-EVDPRHPELVSSWLQSR 310
L P LL G +L + +PE + ++++
Sbjct: 128 FPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTK 161
>gi|223556010 protein arginine methyltransferase 3 isoform 3 [Homo
sapiens]
Length = 454
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 162 LILEVGCGSGAISLSLLSQLPQSRVIAVDKRE---AAISLTHENAQRLRLQDRIWIIHLD 218
++L+VGCG+G +S+ ++ +V+ VD+ E A+ + N +L+D I +I
Sbjct: 181 VVLDVGCGTGILSM-FAAKAGAKKVLGVDQSEILYQAMDIIRLN----KLEDTITLI--- 232
Query: 219 MTSERSWTHLPWGPMDLIVS 238
+ HLP +D+I+S
Sbjct: 233 -KGKIEEVHLPVEKVDVIIS 251
>gi|223556008 protein arginine methyltransferase 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 162 LILEVGCGSGAISLSLLSQLPQSRVIAVDKRE---AAISLTHENAQRLRLQDRIWIIHLD 218
++L+VGCG+G +S+ ++ +V+ VD+ E A+ + N +L+D I +I
Sbjct: 196 VVLDVGCGTGILSM-FAAKAGAKKVLGVDQSEILYQAMDIIRLN----KLEDTITLI--- 247
Query: 219 MTSERSWTHLPWGPMDLIVS 238
+ HLP +D+I+S
Sbjct: 248 -KGKIEEVHLPVEKVDVIIS 266
>gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo
sapiens]
Length = 531
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 162 LILEVGCGSGAISLSLLSQLPQSRVIAVDKRE---AAISLTHENAQRLRLQDRIWIIHLD 218
++L+VGCG+G +S+ ++ +V+ VD+ E A+ + N +L+D I +I
Sbjct: 258 VVLDVGCGTGILSM-FAAKAGAKKVLGVDQSEILYQAMDIIRLN----KLEDTITLI--- 309
Query: 219 MTSERSWTHLPWGPMDLIVS 238
+ HLP +D+I+S
Sbjct: 310 -KGKIEEVHLPVEKVDVIIS 328
>gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens]
Length = 504
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 106 QRMPVQYILGE----WDFQGLSLRMVPPVF--IPRPETEELVEWVLEEVAQRSHAVGSPG 159
Q+ P Q + GE + L +R+ P F I E L V E G
Sbjct: 292 QQSPYQLLFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGE-------LTGVNS 344
Query: 160 SPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAI 196
++L++ CG+G I LSL SRV+ ++ E A+
Sbjct: 345 DTILLDICCGTGVIGLSLAQH--TSRVLGIELLEQAV 379
>gi|122937259 solute carrier family 45, member 4 [Homo sapiens]
Length = 798
Score = 30.0 bits (66), Expect = 3.1
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 237 VSNPPYVFHQDMEQLAPEI-RSYEDPAALDGGE 268
VS ++F D EQ +P+ RS E+P ALDGGE
Sbjct: 193 VSVALHLFSIDEEQYSPQQERSAEEPGALDGGE 225
>gi|93141204 methyltransferase like 2B [Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 4.0
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 156 GSPGSPLILEVGCGSGAISLSLL--SQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
GS + ILEVGCG G +L + P V D AI L N++ R +
Sbjct: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE--YDPSRCF 234
Query: 214 IIHLDMTSERSWTHLPWGPMDLIV 237
D+ E +P G +D+I+
Sbjct: 235 AFVHDLCDEEKSYPVPKGSLDIII 258
>gi|165932358 methyltransferase like 2A [Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 4.0
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 156 GSPGSPLILEVGCGSGAISLSLL--SQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
GS + ILEVGCG G +L + P V D AI L N++ R +
Sbjct: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE--YDPSRCF 234
Query: 214 IIHLDMTSERSWTHLPWGPMDLIV 237
D+ E +P G +D+I+
Sbjct: 235 AFVHDLCDEEKSYPVPKGSLDIII 258
>gi|7657198 dimethyladenosine transferase [Homo sapiens]
Length = 313
Score = 29.6 bits (65), Expect = 4.0
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 162 LILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTS 221
++LEVG G+G +++ LL + +V+A + ++ H+ Q + ++ ++ D+
Sbjct: 59 VVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 116
Query: 222 ERSWTHLPWGPMDLIVSNPPY 242
T LP+ D V+N PY
Sbjct: 117 ----TDLPF--FDTCVANLPY 131
>gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens]
Length = 247
Score = 29.3 bits (64), Expect = 5.2
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 125 RMVPPVFIPRPETEEL-VEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQLPQ 183
R++ P+ +P ++L V+W L V P ++L G G G ++ SLL +LPQ
Sbjct: 11 RLLVPILLPEKCYDQLFVQWDLLHV---------PCLKILLSKGLGLGIVAGSLLVKLPQ 61
Query: 184 SRVIAVDKREAAISL 198
I K +SL
Sbjct: 62 VFKILGAKSAEGLSL 76
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 28.9 bits (63), Expect = 6.8
Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 124 LRMVPPVFIPRPETEELVEWVL----EEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLS 179
L + PPV + +TEELVE V V+ + A+G+P P I + G L
Sbjct: 1646 LVLTPPVILG--DTEELVEEVTVNASSTVSLQCPALGNP-VPTISWLQNGLPFSPSPRLQ 1702
Query: 180 QLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSN 239
L +V+ V E A + ++ + ++E+ +T L V
Sbjct: 1703 VLEDGQVLQVSTAEVADAASYMCVAENQAG----------SAEKLFT--------LRVQV 1744
Query: 240 PPYVFHQDMEQLA------------------PEIRSYEDPAALDGGEEGMDII-THILAL 280
PP + D+EQ+ PE+ Y+D AL GEE + TH L L
Sbjct: 1745 PPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTHTLQL 1804
Query: 281 APRLLKDSG 289
L DSG
Sbjct: 1805 GRARLSDSG 1813
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 28.9 bits (63), Expect = 6.8
Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 124 LRMVPPVFIPRPETEELVEWVL----EEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLS 179
L + PPV + +TEELVE V V+ + A+G+P P I + G L
Sbjct: 2837 LVLTPPVILG--DTEELVEEVTVNASSTVSLQCPALGNP-VPTISWLQNGLPFSPSPRLQ 2893
Query: 180 QLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSN 239
L +V+ V E A + ++ + ++E+ +T L V
Sbjct: 2894 VLEDGQVLQVSTAEVADAASYMCVAENQAG----------SAEKLFT--------LRVQV 2935
Query: 240 PPYVFHQDMEQLA------------------PEIRSYEDPAALDGGEEGMDII-THILAL 280
PP + D+EQ+ PE+ Y+D AL GEE + TH L L
Sbjct: 2936 PPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTHTLQL 2995
Query: 281 APRLLKDSG 289
L DSG
Sbjct: 2996 GRARLSDSG 3004
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 28.9 bits (63), Expect = 6.8
Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 124 LRMVPPVFIPRPETEELVEWVL----EEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLS 179
L + PPV + +TEELVE V V+ + A+G+P P I + G L
Sbjct: 1555 LVLTPPVILG--DTEELVEEVTVNASSTVSLQCPALGNP-VPTISWLQNGLPFSPSPRLQ 1611
Query: 180 QLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSN 239
L +V+ V E A + ++ + ++E+ +T L V
Sbjct: 1612 VLEDGQVLQVSTAEVADAASYMCVAENQAG----------SAEKLFT--------LRVQV 1653
Query: 240 PPYVFHQDMEQLA------------------PEIRSYEDPAALDGGEEGMDII-THILAL 280
PP + D+EQ+ PE+ Y+D AL GEE + TH L L
Sbjct: 1654 PPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTHTLQL 1713
Query: 281 APRLLKDSG 289
L DSG
Sbjct: 1714 GRARLSDSG 1722
>gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]
Length = 546
Score = 28.5 bits (62), Expect = 8.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 43 ELVSHWTGVFEKRGIPEARESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQ 93
EL+ + RG AR S ++ ++G++T+ S R A PLT++Q
Sbjct: 4 ELLVRKVSALQVRG--RARGSQDFSFREIMGSRTWTSQRDATTFSPLTARQ 52
>gi|11321561 hemopexin precursor [Homo sapiens]
Length = 462
Score = 28.5 bits (62), Expect = 8.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 187 IAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPW 230
I +D +AA + + R+W + L ++ +WT LPW
Sbjct: 355 IILDSVDAAFICPGSSRLHIMAGRRLWWLDLKSGAQATWTELPW 398
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 24 WAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEARESS--EYIVAHVLGAKTFQSLR 81
W+ + + P G + E H GV+ RG S + + H + LR
Sbjct: 421 WSAAGYWPLIGFPGTPTQQEPALHRVGVYLDRGTGNVSFYSAVDGVHLHTFSCSSVSRLR 480
Query: 82 PALWTQPLTS 91
P W PL S
Sbjct: 481 PFFWLSPLAS 490
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 24 WAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEARESS--EYIVAHVLGAKTFQSLR 81
W+ + + P G + E H GV+ RG S + + H + LR
Sbjct: 395 WSAAGYWPLIGFPGTPTQQEPALHRVGVYLDRGTGNVSFYSAVDGVHLHTFSCSSVSRLR 454
Query: 82 PALWTQPLTS 91
P W PL S
Sbjct: 455 PFFWLSPLAS 464
>gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Homo
sapiens]
Length = 1025
Score = 28.5 bits (62), Expect = 8.9
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 6 RMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLS-----SAIELVSHWTGVFEK--RGIP 58
R L ALL+GP + AF P LAG + + +E ++ TG F++ R
Sbjct: 783 RHLVALLAGPW----DQSLAFPLAASGPTLAGQTLKGPWNNLERLAENTGEFQEVVRAFY 838
Query: 59 EARESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWD 118
+ +++ + + +R + PL QQ + RE +R +R PV+ +L
Sbjct: 839 DTLDAAR---------SSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVL---- 885
Query: 119 FQGLSLRMVPPV 130
+ G + VP +
Sbjct: 886 YHGTTAPAVPDI 897
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,798,141
Number of Sequences: 37866
Number of extensions: 693405
Number of successful extensions: 1591
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 29
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.