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Search of human proteins with 140972151
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens] 452 e-128
gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens] 384 e-107
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 75 4e-14
gi|12707580 paired-like homeobox 2b [Homo sapiens] 74 9e-14
gi|46249382 paired-like homeobox 2a [Homo sapiens] 72 4e-13
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 71 6e-13
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 71 8e-13
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 70 1e-12
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 67 1e-11
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 67 1e-11
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 67 1e-11
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 66 3e-11
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 66 3e-11
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 66 3e-11
gi|24497589 aristaless related homeobox [Homo sapiens] 66 3e-11
gi|57232759 intestine-specific homeobox [Homo sapiens] 65 3e-11
gi|169881277 PROP paired-like homeobox 1 [Homo sapiens] 65 4e-11
gi|4557489 cone-rod homeobox protein [Homo sapiens] 63 2e-10
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 62 4e-10
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 61 6e-10
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 61 6e-10
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 61 6e-10
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 61 6e-10
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 61 6e-10
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 61 6e-10
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 61 6e-10
gi|7706659 paired related homeobox 2 [Homo sapiens] 61 6e-10
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 61 8e-10
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 60 1e-09
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 60 1e-09
>gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
Length = 215
Score = 452 bits (1164), Expect = e-128
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MMTTGWTGLCLPPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELE 60
MMTTGWTGLCLPPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELE
Sbjct: 1 MMTTGWTGLCLPPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELE 60
Query: 61 RAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCS 120
RAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCS
Sbjct: 61 RAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCS 120
Query: 121 LPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGA 180
LPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGA
Sbjct: 121 LPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGA 180
Query: 181 SEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS 215
SEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS
Sbjct: 181 SEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS 215
>gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
Length = 216
Score = 384 bits (985), Expect = e-107
Identities = 186/212 (87%), Positives = 189/212 (89%), Gaps = 3/212 (1%)
Query: 4 TGWTGLCLPPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELERAF 63
T W G P PS + + + DGGSGLGSHRRKRTTFSKGQLLELERAF
Sbjct: 8 TAWHG---PLARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAF 64
Query: 64 AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD 123
AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD
Sbjct: 65 AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD 124
Query: 124 TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV 183
TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV
Sbjct: 125 TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV 184
Query: 184 HPSLERATPQTSLGSLSDLIYALAIVVNVDHS 215
HPSLERATPQTSLGSLSDLIYALAIVVNVDHS
Sbjct: 185 HPSLERATPQTSLGSLSDLIYALAIVVNVDHS 216
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 75.1 bits (183), Expect = 4e-14
Identities = 62/180 (34%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 38 GSGLG--------SHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQ 89
G GLG HRR RTTF+ QL +LERAF A YP++ + E LA LPE +VQ
Sbjct: 13 GGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
Query: 90 VWFQKRWAK-----IIKNRKSGILSPG-SECPQSSCSLPDTLQQPWDPQMPGQPPPSSGT 143
VWFQ R AK +++ + +P E P + P + P +P + PP G
Sbjct: 73 VWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGL 132
Query: 144 PQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAG-----------ASEVHPSLERATP 192
P+ P PGL Q G A AP + G A E +L+RA P
Sbjct: 133 PRLLG-------PGPGL---QASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWP 182
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 73.9 bits (180), Expect = 9e-14
Identities = 65/192 (33%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 3 TTGWTGLCLPPVNPSRVSSSSLETSTTESIFA--------HDGGSGLGSHRRKRTTFSKG 54
T G T C P + P S +L + A H G + RR RTTF+
Sbjct: 50 TFGATSGC-PSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSA 108
Query: 55 QLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSP---- 110
QL ELER FA YP+I T E LA L EA+VQVWFQ R AK K ++ +
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAK 168
Query: 111 -GSECPQSSCSLPDTLQQ--PWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWE 167
GS +S S D ++ DP G P P+ P T C + G SP
Sbjct: 169 NGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPN---PNPTPSCGANGGGGGGPSPAGAPG 225
Query: 168 GAKAVAPWGSAG 179
A P G G
Sbjct: 226 AAGPGGPGGEPG 237
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 72.0 bits (175), Expect = 4e-13
Identities = 56/160 (35%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELER FA YP+I T E LA L EA+VQVWFQ R AK K +
Sbjct: 91 RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
Query: 105 SG-----------------ILSPGSECPQSSCS-LPDTLQQPWDPQMPGQPPPSSGTPQR 146
+ S + +S+CS PD+ P PG P
Sbjct: 151 AASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPL 210
Query: 147 TSVCRHSSCPAPGLSPRQG--WEGAKAVAPWG-SAGASEV 183
P PG P +G W G G AGA+E+
Sbjct: 211 PVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAEL 250
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 71.2 bits (173), Expect = 6e-13
Identities = 68/204 (33%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 12 PPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNI 71
P PS V + +L + I GS RR RT F+ QL LE+ F YP++
Sbjct: 35 PDYRPS-VHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDV 93
Query: 72 STHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKS---GILSPGSECP------QSSCSLP 122
E LA T LPEA+VQVWF+ R AK K ++S L E ++ P
Sbjct: 94 VMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTP 153
Query: 123 DT-LQQPWDPQMPGQPPPS----SGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGS 177
DT L P++PG PP+ S + Q S P PR G E KA S
Sbjct: 154 DTQLDTEQPPRLPGSDPPAELHLSLSEQSASESAPEDQPDREEDPRAGAEDPKAEK---S 210
Query: 178 AGASEVHPSLERATPQT-SLGSLS 200
GA +R +P+ S GSL+
Sbjct: 211 PGADSKGLGCKRGSPKADSPGSLT 234
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 70.9 bits (172), Expect = 8e-13
Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTFS QL ELE+ F YP++ E LA T L EA+VQVWFQ R AK K +
Sbjct: 154 RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213
Query: 105 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQ--PPPSSGTPQRTSVCRHSSCPAPGLSP 162
G + G ++ + + PQ+ P SG+P + P+P +SP
Sbjct: 214 YGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSP 273
Query: 163 RQGWEGAKAVAPWGSAGASEVHPSL 187
G+ A G S HP +
Sbjct: 274 YSHPHGSVA-GFMGVPAPSAAHPGI 297
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 70.1 bits (170), Expect = 1e-12
Identities = 62/178 (34%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 38 GSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWA 97
GS RR RT F+ QL LE+ F YP++ E LA T LPEA+VQVWF+ R A
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA 124
Query: 98 KIIKNRKS---GILSPGSECP------QSSCSLPDT-LQQPWDPQMPGQPPPS----SGT 143
K K ++S L E ++ PDT L P++PG PP+ S +
Sbjct: 125 KFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLS 184
Query: 144 PQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHPSLERATPQT-SLGSLS 200
Q S P PR G E KA S GA +R +P+ S GSL+
Sbjct: 185 EQSASESAPEDQPDREEDPRAGAEDPKAEK---SPGADSKGLGCKRGSPKADSPGSLT 239
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 67.0 bits (162), Expect = 1e-11
Identities = 54/142 (38%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 44 HRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNR 103
HRR RTTF+ QL ELERAF YP++ + E LA LPE +VQVWFQ R AK +
Sbjct: 136 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQE 195
Query: 104 KSGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPR 163
K L S Q S L + P P P SG PA G P
Sbjct: 196 K---LEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSG-----------GGPAGGALPL 241
Query: 164 QGWEGAKAVAPWGSAGASEVHP 185
+ W G P G A A + P
Sbjct: 242 ESWLGPP--LPGGGATALQSLP 261
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 67.0 bits (162), Expect = 1e-11
Identities = 56/170 (32%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 36 DGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKR 95
D S G RR RTTF+ QL ELE+ F YP++ E LA T L EA+VQVWFQ R
Sbjct: 206 DSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNR 265
Query: 96 WAKIIKNRKSGILSPGSECPQSSCSLP-----DTLQQPWDPQMPGQPPPSSGTPQRTSVC 150
AK K + G + ++ LP + Q +P G +S P C
Sbjct: 266 RAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVPC 325
Query: 151 RH-SSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHPSLERATPQTSLGSL 199
+C +P P GA +V + S + H QT +GSL
Sbjct: 326 DPVPACMSPHAHP--PGSGASSVTDFLSVSGAGSH------VGQTHMGSL 367
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 66.6 bits (161), Expect = 1e-11
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL LER F YP+ E LA L EA+VQVWFQ R AK +N +
Sbjct: 95 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154
Query: 105 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPP--SSGTPQRTSVCRHSSCPAPGLSP 162
+ + + + +S ++QP P+ +P S GT S S SP
Sbjct: 155 AMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSP 214
Query: 163 RQGWEGAKAVA 173
QG A ++A
Sbjct: 215 AQGINMANSIA 225
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277
Query: 105 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 158
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 278 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 330
Query: 159 GLSPRQGWEGAKAVA 173
+ QG A A A
Sbjct: 331 PSTMHQGGLAAAAAA 345
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 216 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 275
Query: 105 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 158
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 276 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 328
Query: 159 GLSPRQGWEGAKAVA 173
+ QG A A A
Sbjct: 329 PSTMHQGGLAAAAAA 343
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277
Query: 105 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 158
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 278 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 330
Query: 159 GLSPRQGWEGAKAVA 173
+ QG A A A
Sbjct: 331 PSTMHQGGLAAAAAA 345
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 65.9 bits (159), Expect = 3e-11
Identities = 43/97 (44%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP++ T E LA L EA+VQVWFQ R AK K K
Sbjct: 329 RRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
Query: 105 SGILS--PGSECPQSSCSLPDTLQQPWDPQMPGQPPP 139
+G + PG P P + P P + P P
Sbjct: 389 AGAQTHPPGLPFPG-----PLSATHPLSPYLDASPFP 420
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 65.5 bits (158), Expect = 3e-11
Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 40 GLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKI 99
G S RR RTTF+ QL ELE+ F YP++ LA LPEA+VQ+WFQ + AK
Sbjct: 78 GRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKW 137
Query: 100 IKNRKSGILSPGSECPQSSCSLP---DTLQQPW-DPQMPGQPPPSSGTPQRTSVCRHSSC 155
K K G L + ++S +LP D W + PP+S P +
Sbjct: 138 RKQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAPPTSCCPSAQDQLASAWF 197
Query: 156 PA-PGLSPRQGWE 167
PA L P WE
Sbjct: 198 PAWITLLPAHPWE 210
>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
Length = 226
Score = 65.1 bits (157), Expect = 4e-11
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 43 SHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKN 102
S RR RTTFS QL +LE AF YP+I E LA T L EA++QVWFQ R AK K
Sbjct: 68 SRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQ 127
Query: 103 RKSGILSPGSECPQSSCS--LPDTLQQPWDPQMPGQPPPSSGTP 144
+S +L P + ++ S LP++ P+ P PPP + P
Sbjct: 128 ERS-LLQPLAHLSPAAFSSFLPESTACPYSYAAP--PPPVTCFP 168
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 63.2 bits (152), Expect = 2e-10
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNR- 103
RR+RTTF++ QL ELE FA YP++ E +A LPE++VQVWF+ R AK + R
Sbjct: 40 RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99
Query: 104 --KSGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGT-PQRTSVCRHSSCPAPGL 160
K PG + +P + P PS+ P + S P PG
Sbjct: 100 QQKQQQQPPGGQAK----------ARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGP 149
Query: 161 SPRQGWEGAKAVAPWGSAGASEVHPSLERATPQTSLGSLSDLIYAL 206
S V+ W A S + P +RA S SL+ YA+
Sbjct: 150 S-GSPTTAVATVSIWSPASESPL-PEAQRAGLVASGPSLTSAPYAM 193
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 62.0 bits (149), Expect = 4e-10
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR+RTTF++ QL LE FA YP+I E +A LPE++VQVWF+ R AK + ++
Sbjct: 39 RRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 98
Query: 105 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQ---PPPSSGTPQRTSVCRHSSCPAPGLS 161
SG S P S P +++ + GQ P SS +S S+ PA +
Sbjct: 99 SG--SGTKSRPAKKKSSP--VRESSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAA 154
Query: 162 PRQGWEGAKAVAPWGSAGASEV 183
G A + + AS +
Sbjct: 155 AGLGGNPVAAASSLSTPAASSI 176
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 219 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 278
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 279 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 331
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL ELERAF YP+I T E LA L EA+VQVWF R A+ K
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
Query: 105 SGILS------PGSECPQSSCSLP-----DTLQQPWD-PQMPGQPPPSSGTPQ 145
+ L PG P + +LP +T QP PQ P + PQ
Sbjct: 280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 61.2 bits (147), Expect = 6e-10
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 43 SHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKN 102
S RRKRT+FS QL LE F YP+I E LA +T LPE+++QVWFQ R AK
Sbjct: 85 SQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAK--SR 142
Query: 103 RKSG 106
R+SG
Sbjct: 143 RQSG 146
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 61.2 bits (147), Expect = 6e-10
Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL LER F YP+ E LA L EA+VQVWFQ R AK +N +
Sbjct: 105 RRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER 164
Query: 105 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTS 148
+ + S S SL + Q + P P P++ +P S
Sbjct: 165 AMLAS-------RSASLLKSYSQEAAIEQPVAPRPTALSPDYLS 201
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 60.8 bits (146), Expect = 8e-10
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 45 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 104
RR RTTF+ QL LER F YP+ E LA L EA+VQVWFQ R AK +N +
Sbjct: 95 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154
Query: 105 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPP----SSGTPQRTS 148
+ + + + +S ++QP P+ +P + +P R+S
Sbjct: 155 AMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYRSS 202
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 60.5 bits (145), Expect = 1e-09
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 19/198 (9%)
Query: 15 NPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTH 74
+P + E + A D S RR+RT F+ QL ELE F YP++ST
Sbjct: 64 SPEAAEKDKSQQGKNEDVGAEDP-SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTR 122
Query: 75 EHLAWVTCLPEAKVQVWFQKR---WAKIIKNRKSGILSPGSECPQSSCSLPDTLQQPWDP 131
E +A T L EA+V+VWF+ R W K +N+++ + G PQ + L QP+D
Sbjct: 123 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFG-PQF-----NGLMQPYDD 176
Query: 132 QMPGQPPPSSGTPQRTSVCR-------HSSCPAPGLSPRQGWEGAKAVAPWGSAGASEVH 184
PG + TS +S LS + + +++ + +S +
Sbjct: 177 MYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSIS--SMSMSSSMV 234
Query: 185 PSLERATPQTSLGSLSDL 202
PS P +SL SL++L
Sbjct: 235 PSAVTGVPGSSLNSLNNL 252
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 60.5 bits (145), Expect = 1e-09
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 19/201 (9%)
Query: 12 PPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNI 71
P +P + E + A D S RR+RT F+ QL ELE F YP++
Sbjct: 54 PRQHPGANEKDKSQQGKNEDVGAEDP-SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDM 112
Query: 72 STHEHLAWVTCLPEAKVQVWFQKR---WAKIIKNRKSGILSPGSECPQSSCSLPDTLQQP 128
ST E +A T L EA+V+VWF+ R W K +N+++ + G PQ + L QP
Sbjct: 113 STREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFG-PQF-----NGLMQP 166
Query: 129 WDPQMPGQPPPSSGTPQRTSVCR-------HSSCPAPGLSPRQGWEGAKAVAPWGSAGAS 181
+D PG + TS +S LS + + +++ + +S
Sbjct: 167 YDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSIS--SMSMSS 224
Query: 182 EVHPSLERATPQTSLGSLSDL 202
+ PS P +SL SL++L
Sbjct: 225 SMVPSAVTGVPGSSLNSLNNL 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,589,298
Number of Sequences: 37866
Number of extensions: 593221
Number of successful extensions: 3476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 2951
Number of HSP's gapped (non-prelim): 686
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.