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Search of human proteins with 13994244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens] 376 e-105
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens] 244 2e-65
gi|29126241 ferritin mitochondrial [Homo sapiens] 229 1e-60
gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens] 215 2e-56
gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens] 215 2e-56
gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo sap... 215 2e-56
gi|20149498 ferritin, light polypeptide [Homo sapiens] 175 2e-44
gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens] 60 1e-09
gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens] 60 1e-09
gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens] 60 1e-09
gi|94681057 tyrosyl-tRNA synthetase 2, mitochondrial [Homo sapiens] 31 0.68
gi|239753604 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239748182 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo ... 30 1.5
gi|41281583 Histidine acid phosphatase domain containing 1 [Homo... 29 2.0
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 28 4.4
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 28 4.4
gi|156151420 hexokinase domain containing 1 [Homo sapiens] 28 4.4
gi|47157315 Janus kinase 3 [Homo sapiens] 27 7.5
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 27 9.8
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 27 9.8
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 27 9.8
>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
Length = 183
Score = 376 bits (966), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS 60
MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
Sbjct: 1 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS 60
Query: 61 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ 120
DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
Sbjct: 61 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ 120
Query: 121 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV 180
LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
Sbjct: 121 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV 180
Query: 181 KET 183
KET
Sbjct: 181 KET 183
>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
Length = 183
Score = 244 bits (624), Expect = 2e-65
Identities = 119/183 (65%), Positives = 146/183 (79%)
Query: 1 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS 60
M TA SQVRQ Y + +AAIN I LELY SY+YLSM++YF+RDDVAL+NF +YFL S
Sbjct: 1 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS 60
Query: 61 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ 120
++ EHA+KLM+LQN RGG I L DI+KP+C WESGL AME A HLEKNVNQSLL+L++
Sbjct: 61 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK 120
Query: 121 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV 180
LA +K DP LC F+E+HYL+EQVK IKELG +V+NLRK+ +PE+GLAEYLFDK TLG
Sbjct: 121 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180
Query: 181 KET 183
E+
Sbjct: 181 NES 183
>gi|29126241 ferritin mitochondrial [Homo sapiens]
Length = 242
Score = 229 bits (584), Expect = 1e-60
Identities = 117/179 (65%), Positives = 140/179 (78%)
Query: 4 AQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDK 63
A PS+VRQ + + +AAIN I LELY SY+YLSMA+YF+RDDVAL NF RYFL S ++
Sbjct: 63 AGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREE 122
Query: 64 MEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAV 123
EHA+KLMRLQN RGG I L DI+KPE WESGL AME A LEKNVNQSLL+L+ LA
Sbjct: 123 TEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALAS 182
Query: 124 EKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRVKE 182
+KGDP LC FLE++YL+EQVK+IKELG +V NL K+ +P+AGLAEYLFD TLG K+
Sbjct: 183 DKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENKQ 241
>gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 215 bits (547), Expect = 2e-56
Identities = 107/157 (68%), Positives = 126/157 (80%)
Query: 3 TAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDD 62
TA QVRQ Y +CDAA+NSH+ LEL+ S +YLSMAFY +RDDV LE F R FL S +
Sbjct: 45 TAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQE 104
Query: 63 KMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLA 122
K EHAQKL+ LQNLRGG ICL DI KPE + WESGL AME AFHLE++VN SLL+L+ LA
Sbjct: 105 KREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLA 164
Query: 123 VEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKI 159
+EKGDPQLC FLESH+L++QVK IKEL GY+SNLRK+
Sbjct: 165 MEKGDPQLCDFLESHFLNQQVKAIKELSGYLSNLRKM 201
>gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 215 bits (547), Expect = 2e-56
Identities = 107/157 (68%), Positives = 126/157 (80%)
Query: 3 TAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDD 62
TA QVRQ Y +CDAA+NSH+ LEL+ S +YLSMAFY +RDDV LE F R FL S +
Sbjct: 45 TAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQE 104
Query: 63 KMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLA 122
K EHAQKL+ LQNLRGG ICL DI KPE + WESGL AME AFHLE++VN SLL+L+ LA
Sbjct: 105 KREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLA 164
Query: 123 VEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKI 159
+EKGDPQLC FLESH+L++QVK IKEL GY+SNLRK+
Sbjct: 165 MEKGDPQLCDFLESHFLNQQVKAIKELSGYLSNLRKM 201
>gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo
sapiens]
Length = 213
Score = 215 bits (547), Expect = 2e-56
Identities = 107/157 (68%), Positives = 126/157 (80%)
Query: 3 TAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDD 62
TA QVRQ Y +CDAA+NSH+ LEL+ S +YLSMAFY +RDDV LE F R FL S +
Sbjct: 45 TAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQE 104
Query: 63 KMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLA 122
K EHAQKL+ LQNLRGG ICL DI KPE + WESGL AME AFHLE++VN SLL+L+ LA
Sbjct: 105 KREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLA 164
Query: 123 VEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKI 159
+EKGDPQLC FLESH+L++QVK IKEL GY+SNLRK+
Sbjct: 165 MEKGDPQLCDFLESHFLNQQVKAIKELSGYLSNLRKM 201
>gi|20149498 ferritin, light polypeptide [Homo sapiens]
Length = 175
Score = 175 bits (444), Expect = 2e-44
Identities = 84/170 (49%), Positives = 119/170 (70%)
Query: 7 SQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEH 66
SQ+RQ Y T+ +AA+NS + L L SY YLS+ FYF+RDDVALE +F L+++K E
Sbjct: 3 SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 62
Query: 67 AQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKG 126
++L+++QN RGG DI+KP W AM++A LEK +NQ+LLDL+ L +
Sbjct: 63 YERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSART 122
Query: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTL 176
DP LC FLE+H+L E+VK IK++G +++NL ++ PEAGL EYLF++LTL
Sbjct: 123 DPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172
>gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 7 SQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEH 66
SQ+ Q Y T +A IN + L L SY+ L + FY +RD+V+LE +F L+++K +
Sbjct: 96 SQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEG-MGHFGELAEEKRQG 154
Query: 67 AQKLMRLQNLRGGHICLHDIRKP 89
++ +++Q+ G HDI+ P
Sbjct: 155 TERFLKMQSQHGSCALFHDIQMP 177
>gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 7 SQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEH 66
SQ+ Q Y T +A IN + L L SY+ L + FY +RD+V+LE +F L+++K +
Sbjct: 96 SQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEG-MGHFGELAEEKRQG 154
Query: 67 AQKLMRLQNLRGGHICLHDIRKP 89
++ +++Q+ G HDI+ P
Sbjct: 155 TERFLKMQSQHGSCALFHDIQMP 177
>gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 7 SQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEH 66
SQ+ Q Y T +A IN + L L SY+ L + FY +RD+V+LE +F L+++K +
Sbjct: 96 SQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEG-MGHFGELAEEKRQG 154
Query: 67 AQKLMRLQNLRGGHICLHDIRKP 89
++ +++Q+ G HDI+ P
Sbjct: 155 TERFLKMQSQHGSCALFHDIQMP 177
>gi|94681057 tyrosyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
Length = 477
Score = 30.8 bits (68), Expect = 0.68
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 39 AFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNL-RGGHICLHDIRKPECQGWESG 97
A + NRD + +++F+R DD +E KL L HI +++PE +G +
Sbjct: 289 AVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 348
Query: 98 LVA 100
L A
Sbjct: 349 LAA 351
>gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 29.6 bits (65), Expect = 1.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 88 KPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIK 147
+P W +GL A++ A LE + L DL A + + L F++ ++ +Q +I
Sbjct: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
Query: 148 ELGGYVSNLRKICSPEAGLAE 168
L Y L + + GL+E
Sbjct: 94 FL-EYHQKLLEESLQQKGLSE 113
>gi|239748182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 29.6 bits (65), Expect = 1.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 88 KPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIK 147
+P W +GL A++ A LE + L DL A + + L F++ ++ +Q +I
Sbjct: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
Query: 148 ELGGYVSNLRKICSPEAGLAE 168
L Y L + + GL+E
Sbjct: 94 FL-EYHQKLLEESLQQKGLSE 113
>gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo
sapiens]
Length = 126
Score = 29.6 bits (65), Expect = 1.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 88 KPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIK 147
+P W +GL A++ A LE + L DL A + + L F++ ++ +Q +I
Sbjct: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
Query: 148 ELGGYVSNLRKICSPEAGLAE 168
L Y L + + GL+E
Sbjct: 94 FL-EYHQKLLEESLQQKGLSE 113
>gi|41281583 Histidine acid phosphatase domain containing 1 [Homo
sapiens]
Length = 1222
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 90 ECQGWESGLVAMESAFHLEKNVNQSLLDLY-QLAVEKGDPQLCHFLESHYLHEQVKTIKE 148
+C G++SG + ++ L Q +LD+ QL +E G E+ EQ+KT+ E
Sbjct: 413 KCDGYKSGKLKLKKPKQL-----QEVLDIARQLLMELGQNNDSEIEENKPKLEQLKTVLE 467
Query: 149 LGGYVSNLRK 158
+ G+ S + +
Sbjct: 468 MYGHFSGINR 477
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 28.1 bits (61), Expect = 4.4
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 11 QKYDTNCDAAINSHITLELYTSYLYLSMAFY----FNRDDVA--LENFFRYFLRLSDDKM 64
Q D + AA+ +HI + + + +++D+ L+N + RL D++
Sbjct: 146 QGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERD 205
Query: 65 EHAQKLMRLQNLRGG-HICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAV 123
EH++ ++ L R G H H + G+ ES HL + + + +L
Sbjct: 206 EHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQ 265
Query: 124 E 124
E
Sbjct: 266 E 266
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 28.1 bits (61), Expect = 4.4
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 11 QKYDTNCDAAINSHITLELYTSYLYLSMAFY----FNRDDVA--LENFFRYFLRLSDDKM 64
Q D + AA+ +HI + + + +++D+ L+N + RL D++
Sbjct: 146 QGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERD 205
Query: 65 EHAQKLMRLQNLRGG-HICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAV 123
EH++ ++ L R G H H + G+ ES HL + + + +L
Sbjct: 206 EHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQ 265
Query: 124 E 124
E
Sbjct: 266 E 266
>gi|156151420 hexokinase domain containing 1 [Homo sapiens]
Length = 917
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 38 MAFYFNR---DDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRG 78
MAFYF++ D + + F Y +RLSDD + + R + +G
Sbjct: 7 MAFYFSKLKEDQIKKVDRFLYHMRLSDDTLLDIMRRFRAEMEKG 50
>gi|47157315 Janus kinase 3 [Homo sapiens]
Length = 1124
Score = 27.3 bits (59), Expect = 7.5
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 94 WESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYV 153
W G+V E + +K+ + S L + E+ P LC LE +++ V
Sbjct: 1011 WSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALCRLLELLEEGQRLPAPPACPAEV 1070
Query: 154 SNLRKIC 160
L K+C
Sbjct: 1071 HELMKLC 1077
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 LHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLD--LYQLAVEK 125
+ DI E + W +A+E F +++NV +SL +Y+ VE+
Sbjct: 655 IQDILTRENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVER 699
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 LHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLD--LYQLAVEK 125
+ DI E + W +A+E F +++NV +SL +Y+ VE+
Sbjct: 655 IQDILTRENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVER 699
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 83 LHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLD--LYQLAVEK 125
+ DI E + W +A+E F +++NV +SL +Y+ VE+
Sbjct: 655 IQDILTRENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVER 699
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,676,538
Number of Sequences: 37866
Number of extensions: 263293
Number of successful extensions: 600
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 25
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.