Guide to the Human Genome
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Name: LOC139431 Sequence: fasta or formatted (213aa) NCBI GI: 169217004
Description:

PREDICTED: similar to hCG1799751

Referenced in:

Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt mRNA [213aa] PREDICTED: hypothetical protein LOC139431
alt mRNA [213aa] PREDICTED: similar to hCG1799751
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         16           2
 C cysteine            4.2          9           1
 D aspartate           4.7         10           2
 E glutamate           7.5         16           2
 F phenylalanine       3.3          7           1
 G glycine             3.8          8           2
 H histidine           3.3          7           1
 I isoleucine          2.8          6           1
 K lysine              5.6         12           2
 L leucine            12.2         26           2
 M methionine          3.8          8           2
 N asparagine          4.2          9           1
 P proline             4.2          9           1
 Q glutamine           6.1         13           2
 R arginine            6.6         14           1
 S serine              7.0         15           1
 T threonine           2.8          6           1
 V valine              4.7         10           1
 W tryptophan          1.9          4           1
 Y tyrosine            3.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1799751 
LOC139431             1.000   PREDICTED: similar to hCG1799751 
LOC139431             1.000   PREDICTED: hypothetical protein LOC139431 
FTHL17                0.453   ferritin, heavy polypeptide-like 17 
FTH1                  0.451   ferritin, heavy polypeptide 1 
FTMT                  0.430   ferritin mitochondrial 
FTL                   0.305   ferritin, light polypeptide 
LOC642337             0.072   PREDICTED: similar to hCG1648021 
LOC642337             0.072   PREDICTED: similar to hCG1648021 
LOC642337             0.072   PREDICTED: similar to hCG1648021 
LOC100292771          0.021   PREDICTED: hypothetical protein 
LOC100287790          0.021   PREDICTED: hypothetical protein 
LOC100287790          0.021   PREDICTED: hypothetical protein XP_002342430 
ZNF282                0.012   zinc finger protein 282 
ZNF212                0.012   zinc finger protein 212 
JMY                   0.010   junction-mediating and regulatory protein 
ZNF746                0.007   zinc finger protein 746 
PEX7                  0.007   peroxisomal biogenesis factor 7 
LOC730005             0.007   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
LOC730005             0.007   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
ZBTB38                0.007   zinc finger and BTB domain containing 38 
GPR87                 0.007   G protein-coupled receptor 87 
LOC730005             0.005   PREDICTED: similar to SEC14p-like protein TAP3 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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