Guide to the Human Genome
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Name: LOC642337 Sequence: fasta or formatted (183aa) NCBI GI: 239747398
Description:

PREDICTED: similar to hCG1648021

Referenced in:

Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt prot [183aa] PREDICTED: similar to hCG1648021
alt mRNA [183aa] PREDICTED: similar to hCG1648021
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         12           2
 C cysteine            4.4          8           1
 D aspartate           4.4          8           1
 E glutamate           6.0         11           2
 F phenylalanine       4.9          9           1
 G glycine             7.7         14           1
 H histidine           4.9          9           1
 I isoleucine          4.9          9           1
 K lysine              2.7          5           2
 L leucine            13.1         24           2
 M methionine          2.7          5           1
 N asparagine          2.7          5           1
 P proline             4.9          9           1
 Q glutamine           6.0         11           2
 R arginine            4.9          9           1
 S serine              9.3         17           2
 T threonine           4.9          9           1
 V valine              1.6          3           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1648021 
LOC642337             1.000   PREDICTED: similar to hCG1648021 
LOC642337             0.994   PREDICTED: similar to hCG1648021 
FTL                   0.254   ferritin, light polypeptide 
FTH1                  0.126   ferritin, heavy polypeptide 1 
FTMT                  0.115   ferritin mitochondrial 
FTHL17                0.098   ferritin, heavy polypeptide-like 17 
LOC139431             0.084   PREDICTED: similar to hCG1799751 
LOC139431             0.084   PREDICTED: similar to hCG1799751 
LOC139431             0.084   PREDICTED: hypothetical protein LOC139431 
WDR66                 0.020   WD repeat domain 66 
LOC100293698          0.014   PREDICTED: similar to proliferation-inducing protei...
NELL2                 0.014   NEL-like protein 2 isoform d 
NELL2                 0.014   NEL-like protein 2 isoform c 
NELL2                 0.014   NEL-like protein 2 isoform b precursor 
NELL2                 0.014   NEL-like protein 2 isoform a 
NELL2                 0.014   NEL-like protein 2 isoform b precursor 
LOC100291513          0.011   PREDICTED: hypothetical protein XP_002348243 
LOC100289585          0.011   PREDICTED: hypothetical protein XP_002342267 
BTRC                  0.008   beta-transducin repeat containing protein isoform 2 [...
LRP3                  0.008   low density lipoprotein receptor-related protein 3 ...
BTRC                  0.008   beta-transducin repeat containing protein isoform 1 ...
TMEM91                0.008   transmembrane protein 91 isoform c 
TMEM91                0.008   transmembrane protein 91 isoform c 
TMPRSS11F             0.006   transmembrane protease, serine 11F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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