Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7661890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661890 sorting nexin 17 [Homo sapiens]
(470 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661890 sorting nexin 17 [Homo sapiens] 919 0.0
gi|222537716 sorting nexin 31 [Homo sapiens] 311 6e-85
gi|31742501 sorting nexin family member 27 [Homo sapiens] 125 1e-28
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 44 2e-04
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 44 2e-04
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 44 2e-04
gi|7662655 SBBI31 protein [Homo sapiens] 42 0.002
gi|23111038 sorting nexin 2 [Homo sapiens] 41 0.002
gi|23943858 sorting nexin 8 [Homo sapiens] 40 0.003
gi|71772838 sorting nexin 22 [Homo sapiens] 39 0.008
gi|23111026 sorting nexin 11 [Homo sapiens] 39 0.008
gi|23111028 sorting nexin 11 [Homo sapiens] 39 0.008
gi|154091028 sorting nexin 29 [Homo sapiens] 39 0.010
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 38 0.017
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 38 0.017
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 38 0.017
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 38 0.017
gi|23111023 sorting nexin 10 [Homo sapiens] 38 0.017
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens] 37 0.030
gi|153791707 sorting nexin family member 30 [Homo sapiens] 36 0.066
gi|24797143 sorting nexin 14 isoform b [Homo sapiens] 35 0.19
gi|24797145 sorting nexin 14 isoform a [Homo sapiens] 35 0.19
gi|68800430 HCLS1 binding protein 3 [Homo sapiens] 35 0.19
gi|4507145 sorting nexin 4 [Homo sapiens] 34 0.25
gi|221139761 zinc finger protein 853 [Homo sapiens] 33 0.56
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 33 0.73
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 33 0.73
gi|209862887 hypothetical protein LOC81556 isoform 1 [Homo sapiens] 33 0.73
gi|13540586 hypothetical protein LOC81556 isoform 2 [Homo sapiens] 33 0.73
gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens] 32 1.2
>gi|7661890 sorting nexin 17 [Homo sapiens]
Length = 470
Score = 919 bits (2376), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
Query: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
Query: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
Query: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
Query: 421 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL 470
SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
Sbjct: 421 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL 470
>gi|222537716 sorting nexin 31 [Homo sapiens]
Length = 440
Score = 311 bits (798), Expect = 6e-85
Identities = 168/387 (43%), Positives = 249/387 (64%), Gaps = 8/387 (2%)
Query: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
MHF IP ++ RS D+ G YV Y++H++G L CRVRYSQL G +EQLR+ +G N LP FP
Sbjct: 3 MHFCIPVSQQRS-DALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFG-NCLPPFP 60
Query: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
PK ++T A ++RR+QLE+Y+Q V DP + S+ F FL+ AQ T + T++ L+
Sbjct: 61 PKYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSDVFVEFLKLAQLNTFDIATKKAYLD 120
Query: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
+ L N Q + + ++TSD E VLE V+ K+ L +L+GYF LFL+R ++G S V+KL
Sbjct: 121 IFLPNEQSIRIEIITSDTAERVLEVVSHKIGLCRELLGYFGLFLIRFGKEGKLSVVKKLA 180
Query: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
+FELPYVS+ S + K+ LRK Y + D +M+ RV ++LLY Q + DIE+GW T
Sbjct: 181 DFELPYVSLGSSEVENCKVGLRKWYMAPSLDSVLMDCRVAVDLLYMQAIQDIEKGWAKPT 240
Query: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
+ Q ++L++ Q++ S+ +FL LA+ +RHYGYL+ D C D+PE V+S GN+E+S
Sbjct: 241 QAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEISCC 300
Query: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRL- 359
+ LP Q ++ F+++R++CW+VT L T P R + LEL F+Y S+D
Sbjct: 301 ITLPDSQTQDIVFQMSRVKCWQVTFLGTLL--DTDGPQRTLNQ-NLELRFQY--SEDSCW 355
Query: 360 QWVTITSPQAIMMSICLQSMVDELMVK 386
QW I + QA ++S CL+ M+ E MVK
Sbjct: 356 QWFVIYTKQAFLLSSCLKKMISEKMVK 382
>gi|31742501 sorting nexin family member 27 [Homo sapiens]
Length = 528
Score = 125 bits (313), Expect = 1e-28
Identities = 100/383 (26%), Positives = 169/383 (44%), Gaps = 40/383 (10%)
Query: 14 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 73
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 174 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 233
Query: 74 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNV 133
RR LE+Y++ V ++G S+ FL + + V +V L V L +G V V V
Sbjct: 234 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGV--SDVELRVALPDGTTVTVRV 291
Query: 134 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLR 193
+ T+ V +A+AAK+ + + YF+LF E + SFVRKL E P+ L
Sbjct: 292 KKNSTTDQVYQAIAAKVGMDSTTVNYFALF-----EVISHSFVRKLAPNEFPH----KLY 342
Query: 194 SQEYK-------IVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQ 246
Q Y + +RK + + + + +N + + + Q V D+++G+I +E+ Q
Sbjct: 343 IQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQ 401
Query: 247 LKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQ 306
L+ L E+ +L + +T Y + F C D K V+ + + L
Sbjct: 402 LQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEG 460
Query: 307 QLREG--SFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTI 364
QL +F M+ W T G + FEY + + +WV I
Sbjct: 461 QLENQVIAFEWDEMQRW-----------DTDEEG-------MAFCFEYARGEKKPRWVKI 502
Query: 365 TSPQAIMMSICLQSMVDELMVKK 387
+P M C + + EL +K
Sbjct: 503 FTPYFNYMHECFERVFCELKWRK 525
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 8 TESRSGDSGGSAYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEYGAN--VLP 57
T+ G +AYVAY + L + R+S LGL+E+L +++ N ++P
Sbjct: 150 TDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVP 209
Query: 58 AFPPKKLFSLTPAEV-----------EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 106
P K L +T +V E+RR LE+Y+Q + P + FL + +
Sbjct: 210 PPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 44.3 bits (103), Expect = 2e-04
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 22/116 (18%)
Query: 12 SGDSGGSAYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEYGAN--VLPAFPP 61
+GD G +AYVAY + L + R+S LGL+E+L +++ N ++P P
Sbjct: 90 AGD-GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPE 148
Query: 62 KKLFSLTPAEV-----------EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 106
K L +T +V E+RR LE+Y+Q + P + FL + +
Sbjct: 149 KSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 204
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 8 TESRSGDSGGSAYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEYGAN--VLP 57
T+ G +AYVAY + L + R+S LGL+E+L +++ N ++P
Sbjct: 150 TDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVP 209
Query: 58 AFPPKKLFSLTPAEV-----------EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 106
P K L +T +V E+RR LE+Y+Q + P + FL + +
Sbjct: 210 PPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269
>gi|7662655 SBBI31 protein [Homo sapiens]
Length = 169
Score = 41.6 bits (96), Expect = 0.002
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 20 YVAYNIHV--NGVLH-CRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRR 76
Y + I V NG H RYS+ LH++L+K P P K + + P +EQRR
Sbjct: 19 YTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKK---CIKTPEIPSKHVRNWVPKVLEQRR 75
Query: 77 EQLEKYMQA-----------------VRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSL 119
+ LE Y+QA VR P L +E+ SF +E+ ++ + V L
Sbjct: 76 QGLETYLQAVILENEELPKLFLDFLNVRHLPSLPKAESCGSFDETESEESSKLSHQPVLL 135
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 16 GGSAYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEY--GANVLPAFPPKKLF 65
G +AY+AY + L + R+S LGLH +L +Y ++P P K +
Sbjct: 155 GMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIV 214
Query: 66 SLTPAEV-----------EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPT 114
+T +V E+RR LE+Y+Q + P L FL E+ ++P
Sbjct: 215 GMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFL-----ESSELP- 268
Query: 115 EEVSLEVLLSNGQKVLVN 132
V+ + L G +VN
Sbjct: 269 RAVNTQALSGAGILRMVN 286
>gi|23943858 sorting nexin 8 [Homo sapiens]
Length = 465
Score = 40.4 bits (93), Expect = 0.003
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSS 95
RY+ + E L ++ ++PA PPK++ +E RR L++++ V + PL
Sbjct: 109 RYNDFVVFQEMLLHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVARHPLFSED 168
Query: 96 ETFNSFLRRAQQETQ 110
FL + + Q
Sbjct: 169 VVLKLFLSFSGSDVQ 183
>gi|71772838 sorting nexin 22 [Homo sapiens]
Length = 193
Score = 39.3 bits (90), Expect = 0.008
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAV 86
RYS+ LH++++K Y +P FP K+L + +EQRR+ LE Y+Q +
Sbjct: 43 RYSEFHALHKRIKKLYK---VPDFPSKRLPNWRTRGLEQRRQGLEAYIQGI 90
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 39.3 bits (90), Expect = 0.008
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 18 SAYVAYNI--HVNGVLHC------RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTP 69
++YV Y I H N R RY + + L +QL++ G +P P K F T
Sbjct: 33 NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTS 92
Query: 70 AE-VEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 103
E +E+RR+ L+ +++ V Q +L S + FL+
Sbjct: 93 DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 39.3 bits (90), Expect = 0.008
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 18 SAYVAYNI--HVNGVLHC------RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTP 69
++YV Y I H N R RY + + L +QL++ G +P P K F T
Sbjct: 33 NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTS 92
Query: 70 AE-VEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 103
E +E+RR+ L+ +++ V Q +L S + FL+
Sbjct: 93 DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAE-VEQRREQLEKYMQAV 86
RY++ LH +L+ +Y FPPKK A+ VE+RR+QL+ Y+++V
Sbjct: 309 RYTEFRSLHHKLQNKYPQVRAYNFPPKKAIGNKDAKFVEERRKQLQNYLRSV 360
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEV-EQRREQLEKYMQ 84
RYS+ +H+ L+ +Y FPPKKLF V +RR LEKY++
Sbjct: 1220 RYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAERRSHLEKYLR 1269
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 38.1 bits (87), Expect = 0.017
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVEQRREQLEKYMQAVRQDPLLG 93
RY++ L+ L+K++ A L P K++F + P ++QRR L +++Q + + P L
Sbjct: 50 RYAEFDKLYNTLKKQFPAMALK-IPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELY 108
Query: 94 SSETFNSFLRRAQQETQQVPTE---EVSLEVLLSNGQKVLV----NVLTSDQTEDVLEAV 146
+ +FL+ + Q P+E E S + L S Q + + N D L+ +
Sbjct: 109 NHPDVRAFLQMDSPKHQSDPSEDEDERSSQKLHSTSQNINLGPSGNPHAKPTDFDFLKVI 168
Query: 147 AAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQE 181
+ + L + K DG F V+ LQ+
Sbjct: 169 GKG--------SFGKVLLAKRKLDGKFYAVKVLQK 195
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 38.1 bits (87), Expect = 0.017
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVEQRREQLEKYMQAVRQDPLLG 93
RY++ L+ L+K++ A L P K++F + P ++QRR L +++Q + + P L
Sbjct: 50 RYAEFDKLYNTLKKQFPAMALK-IPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELY 108
Query: 94 SSETFNSFLRRAQQETQQVPTE---EVSLEVLLSNGQKVLV----NVLTSDQTEDVLEAV 146
+ +FL+ + Q P+E E S + L S Q + + N D L+ +
Sbjct: 109 NHPDVRAFLQMDSPKHQSDPSEDEDERSSQKLHSTSQNINLGPSGNPHAKPTDFDFLKVI 168
Query: 147 AAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQE 181
+ + L + K DG F V+ LQ+
Sbjct: 169 GKG--------SFGKVLLAKRKLDGKFYAVKVLQK 195
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 38.1 bits (87), Expect = 0.017
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVEQRREQLEKYMQAVRQDPLLG 93
RY++ L+ L+K++ A L P K++F + P ++QRR L +++Q + + P L
Sbjct: 50 RYAEFDKLYNTLKKQFPAMALK-IPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELY 108
Query: 94 SSETFNSFLRRAQQETQQVPTE---EVSLEVLLSNGQKVLV----NVLTSDQTEDVLEAV 146
+ +FL+ + Q P+E E S + L S Q + + N D L+ +
Sbjct: 109 NHPDVRAFLQMDSPKHQSDPSEDEDERSSQKLHSTSQNINLGPSGNPHAKPTDFDFLKVI 168
Query: 147 AAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQE 181
+ + L + K DG F V+ LQ+
Sbjct: 169 GKG--------SFGKVLLAKRKLDGKFYAVKVLQK 195
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 19 AYVAYNIHVNGVLHC--------RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLT 68
+Y+ Y I ++ C R RY + + L ++L+ LP P K LF
Sbjct: 28 SYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNN 87
Query: 69 PAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 103
V+QRR+ LE +++ V Q+ LL S + + FL+
Sbjct: 88 RQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQ 122
>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
Length = 1578
Score = 37.4 bits (85), Expect = 0.030
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 119 LEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRK 178
L++ L NGQ + +D++ V KL + I YF+L L +E + S +
Sbjct: 183 LKLYLENGQTKAFKFEANTTVKDIILTVKEKLSIRS--IEYFALAL---EEQYSISRLHL 237
Query: 179 LQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDI 232
L E EL V S +Y+ + R + D + E+ V LY Q+ SD+
Sbjct: 238 LHEEELIQQVVEREESHDYRCLFRVCFVPKDPLDLLKEDPVAFEYLYLQSCSDV 291
>gi|153791707 sorting nexin family member 30 [Homo sapiens]
Length = 437
Score = 36.2 bits (82), Expect = 0.066
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 34 RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-----LTPAEVEQRREQLEKYMQAVRQ 88
R RY L +L + +++P P K + + VE RR+ L+K+++ +
Sbjct: 130 RRRYQDFDWLRSKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITD 189
Query: 89 DPLLGSSETFNSFL 102
P+L +E FN FL
Sbjct: 190 HPVLSFNEHFNIFL 203
>gi|24797143 sorting nexin 14 isoform b [Homo sapiens]
Length = 893
Score = 34.7 bits (78), Expect = 0.19
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAE-VEQRREQLEKYMQAVRQDPLLGS 94
RY + L +L + +GA P K++ E ++ +RE+ ++Y+Q + Q P L +
Sbjct: 563 RYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSN 622
Query: 95 SETFNSFLRRAQQETQ 110
S+ FL ETQ
Sbjct: 623 SQLLADFLSPNGGETQ 638
>gi|24797145 sorting nexin 14 isoform a [Homo sapiens]
Length = 946
Score = 34.7 bits (78), Expect = 0.19
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAE-VEQRREQLEKYMQAVRQDPLLGS 94
RY + L +L + +GA P K++ E ++ +RE+ ++Y+Q + Q P L +
Sbjct: 616 RYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSN 675
Query: 95 SETFNSFLRRAQQETQ 110
S+ FL ETQ
Sbjct: 676 SQLLADFLSPNGGETQ 691
>gi|68800430 HCLS1 binding protein 3 [Homo sapiens]
Length = 392
Score = 34.7 bits (78), Expect = 0.19
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSS 95
+YS++ +++L Y A LP P K LF + +++ +RR + ++ V +D L S
Sbjct: 70 KYSEIEEFYQKLSSRYAAASLPPLPRKVLF-VGESDIRERRAVFNEILRCVSKDAELAGS 128
Query: 96 ETFNSFL 102
FL
Sbjct: 129 PELLEFL 135
>gi|4507145 sorting nexin 4 [Homo sapiens]
Length = 450
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 1 MHFSIPETESRSGDSGGS---AYVAYNIHVNGVLHCRV----------RYSQLLGLHEQL 47
+ S+ E E R+G + + Y AY I V H RYS+ L L
Sbjct: 58 IEISVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYL 117
Query: 48 RKEYGANVLPAFPPKKLF---------SLTPAEVEQRREQLEKYMQAVRQDPLLGSSETF 98
Y V+P P K+ ++ P VE+RR LE ++ + P+L + F
Sbjct: 118 LVYYPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIF 177
Query: 99 NSFL 102
FL
Sbjct: 178 YLFL 181
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 33.1 bits (74), Expect = 0.56
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 71 EVEQRREQLEKYMQAVRQDP----LLGSSETFNSFLRRAQQETQQVPTEEVSLE---VLL 123
E+EQ+R++LE+ + RQ L E ++ +Q+ QQ+ +EV LE V L
Sbjct: 334 ELEQQRQELERQQELERQQEQRQLQLKLQEELQQLEQQLEQQQQQLEQQEVQLELTPVEL 393
Query: 124 SNGQKVLVNVLTSDQTEDVLEAVAA 148
Q+ + LT Q E LE V A
Sbjct: 394 GAQQQEVQLELTPVQPELQLELVPA 418
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 32.7 bits (73), Expect = 0.73
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 34 RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-----LTPAEVEQRREQLEKYMQAVRQ 88
R RY L L +L + + ++P P K + +E RR+ L K++ +
Sbjct: 71 RRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIAD 130
Query: 89 DPLLGSSETFNSFL 102
P L +E F FL
Sbjct: 131 HPTLTFNEDFKIFL 144
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 32.7 bits (73), Expect = 0.73
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 34 RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-----LTPAEVEQRREQLEKYMQAVRQ 88
R RY L L +L + + ++P P K + +E RR+ L K++ +
Sbjct: 135 RRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIAD 194
Query: 89 DPLLGSSETFNSFL 102
P L +E F FL
Sbjct: 195 HPTLTFNEDFKIFL 208
>gi|209862887 hypothetical protein LOC81556 isoform 1 [Homo sapiens]
Length = 439
Score = 32.7 bits (73), Expect = 0.73
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 245 RQLKSLQEKVSK--KEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLR 302
R + L EK KE RL + +G+L VAD E++C ++ + + + QL
Sbjct: 342 RNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPETAHPDAAFQLT 401
Query: 303 LPGQQLREGS 312
QQL+ S
Sbjct: 402 HAAQQLKLAS 411
>gi|13540586 hypothetical protein LOC81556 isoform 2 [Homo sapiens]
Length = 518
Score = 32.7 bits (73), Expect = 0.73
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 245 RQLKSLQEKVSK--KEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLR 302
R + L EK KE RL + +G+L VAD E++C ++ + + + QL
Sbjct: 421 RNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPETAHPDAAFQLT 480
Query: 303 LPGQQLREGS 312
QQL+ S
Sbjct: 481 HAAQQLKLAS 490
>gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens]
Length = 1113
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 40 LLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETF- 98
L+ E+L KE + P+K ++E R++LEK +QA R +E
Sbjct: 343 LINEKEELLKE-----MRFISPRKWTQGEVEQLEMARKRLEKDLQAARDTQSKALTERLK 397
Query: 99 -----NSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLD 151
N +R ++ T+QV T L+ L S+ Q + T VA+ LD
Sbjct: 398 LNSKRNQLVRELEEATRQVATLHSQLKSLSSSMQSLSSGSSPGSLTSSRGSLVASSLD 455
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,927,776
Number of Sequences: 37866
Number of extensions: 730139
Number of successful extensions: 2350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 62
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.