Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NCR1 Sequence: fasta or formatted (304aa) NCBI GI: 4758692
Description:

natural cytotoxicity triggering receptor 1 isoform a

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [303aa] natural cytotoxicity triggering receptor 1 isoform b
alt prot [287aa] natural cytotoxicity triggering receptor 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         18           1
 C cysteine            2.3          7           2
 D aspartate           3.6         11           1
 E glutamate           6.2         19           1
 F phenylalanine       4.3         13           1
 G glycine             6.2         19           1
 H histidine           2.6          8           1
 I isoleucine          2.6          8           1
 K lysine              3.9         12           1
 L leucine            11.5         35           3
 M methionine          2.3          7           1
 N asparagine          3.0          9           2
 P proline             6.6         20           2
 Q glutamine           4.3         13           3
 R arginine            6.2         19           3
 S serine              6.9         21           2
 T threonine           8.2         25           2
 V valine              6.9         21           2
 W tryptophan          2.6          8           1
 Y tyrosine            3.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   natural cytotoxicity triggering receptor 1 isoform a ... 
NCR1                  0.990   natural cytotoxicity triggering receptor 1 isoform ...
NCR1                  0.924   natural cytotoxicity triggering receptor 1 isoform ...
LILRB4                0.257   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB4                0.257   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.249   leukocyte immunoglobulin-like receptor subfamily A m...
GP6                   0.244   glycoprotein VI (platelet) isoform 2 
LILRA6                0.234   leukocyte immunoglobulin-like receptor, subfamily A...
LILRB3                0.232   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.232   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.231   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA4                0.229   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.227   leukocyte immunoglobulin-like receptor subfamily A m...
GP6                   0.216   glycoprotein VI (platelet) isoform 1 
LILRA5                0.213   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.204   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.204   leukocyte immunoglobulin-like receptor, subfamily B, ...
LILRA1                0.201   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRB2                0.198   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.198   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.189   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA3                0.189   leukocyte immunoglobulin-like receptor, subfamily A ...
FCAR                  0.186   Fc alpha receptor isoform a precursor 
LOC100293904          0.178   PREDICTED: similar to leucocyte immunoglobulin-like...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA2                0.178   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.178   leukocyte immunoglobulin-like receptor, subfamily A (...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press