Guide to the Human Genome
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Name: NCR1 Sequence: fasta or formatted (303aa) NCBI GI: 224586786
Description:

natural cytotoxicity triggering receptor 1 isoform b

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [287aa] natural cytotoxicity triggering receptor 1 isoform c
alt prot [304aa] natural cytotoxicity triggering receptor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         17           1
 C cysteine            2.3          7           2
 D aspartate           3.6         11           1
 E glutamate           6.3         19           1
 F phenylalanine       4.3         13           1
 G glycine             6.3         19           1
 H histidine           2.6          8           1
 I isoleucine          2.6          8           1
 K lysine              4.0         12           1
 L leucine            11.6         35           3
 M methionine          2.3          7           1
 N asparagine          3.0          9           2
 P proline             6.6         20           2
 Q glutamine           4.3         13           3
 R arginine            6.3         19           3
 S serine              6.9         21           2
 T threonine           8.3         25           2
 V valine              6.9         21           2
 W tryptophan          2.6          8           1
 Y tyrosine            3.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   natural cytotoxicity triggering receptor 1 isoform ... 
NCR1                  0.992   natural cytotoxicity triggering receptor 1 isoform a ...
NCR1                  0.927   natural cytotoxicity triggering receptor 1 isoform ...
LILRB4                0.257   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB4                0.257   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.249   leukocyte immunoglobulin-like receptor subfamily A m...
GP6                   0.243   glycoprotein VI (platelet) isoform 2 
LILRA6                0.234   leukocyte immunoglobulin-like receptor, subfamily A...
LILRB3                0.233   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.233   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA4                0.229   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.228   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.226   leukocyte immunoglobulin-like receptor, subfamily B...
GP6                   0.216   glycoprotein VI (platelet) isoform 1 
LILRA5                0.213   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.205   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.205   leukocyte immunoglobulin-like receptor, subfamily B, ...
LILRA1                0.201   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRB2                0.198   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.198   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.190   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA3                0.190   leukocyte immunoglobulin-like receptor, subfamily A ...
FCAR                  0.186   Fc alpha receptor isoform a precursor 
LOC100293904          0.178   PREDICTED: similar to leucocyte immunoglobulin-like...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.178   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA2                0.178   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.178   leukocyte immunoglobulin-like receptor, subfamily A (...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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