Guide to the Human Genome
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Name: CDC42 Sequence: fasta or formatted (191aa) NCBI GI: 89903012
Description:

cell division cycle 42 isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Additional Cell Cycle Functions
Additional Interaction Domain Families
Rho and Rac
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [191aa] cell division cycle 42 isoform 2
alt mRNA [191aa] cell division cycle 42 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         11           2
 C cysteine            3.1          6           1
 D aspartate           5.8         11           2
 E glutamate           6.8         13           1
 F phenylalanine       4.2          8           1
 G glycine             4.7          9           2
 H histidine           1.0          2           2
 I isoleucine          4.2          8           1
 K lysine              8.9         17           2
 L leucine             9.9         19           2
 M methionine          1.0          2           1
 N asparagine          2.6          5           1
 P proline             7.9         15           2
 Q glutamine           3.1          6           1
 R arginine            3.1          6           2
 S serine              5.2         10           2
 T threonine           8.4         16           2
 V valine              9.9         19           3
 W tryptophan          0.5          1           1
 Y tyrosine            3.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell division cycle 42 isoform 1 
CDC42                 1.000   cell division cycle 42 isoform 1 
CDC42                 0.959   cell division cycle 42 isoform 2 
RAC1                  0.712   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RAC3                  0.699   ras-related C3 botulinum toxin substrate 3 (rho famil...
RAC2                  0.688   ras-related C3 botulinum toxin substrate 2 
RAC1                  0.682   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RHOQ                  0.663   ras-like protein TC10 
RHOG                  0.622   ras homolog gene family, member G 
RHOJ                  0.619   ras homolog gene family, member J 
RHOU                  0.578   ras homolog gene family, member U 
RHOA                  0.515   ras homolog gene family, member A 
RHOV                  0.504   ras homolog gene family, member V 
RHOC                  0.504   ras homolog gene family, member C precursor 
RHOC                  0.504   ras homolog gene family, member C precursor 
RHOC                  0.504   ras homolog gene family, member C precursor 
RHOB                  0.479   ras homolog gene family, member B 
RHOD                  0.422   ras homolog D 
RHOF                  0.411   ras homolog gene family, member F 
RHOH                  0.364   ras homolog gene family, member H 
RND3                  0.348   ras homolog gene family, member E 
RND2                  0.323   Rho family GTPase 2 
RND1                  0.293   GTP-binding protein RHO6 
RHOBTB1               0.266   Rho-related BTB domain containing 1 
RHOBTB2               0.263   Rho-related BTB domain containing 2 isoform 3 [Homo...
RHOBTB2               0.263   Rho-related BTB domain containing 2 isoform 2 [Homo...
RHOBTB2               0.263   Rho-related BTB domain containing 2 isoform 1 [Homo...
HRAS                  0.170   v-Ha-ras Harvey rat sarcoma viral oncogene homolog ...
HRAS                  0.170   v-Ha-ras Harvey rat sarcoma viral oncogene homolog is...
HRAS                  0.164   v-Ha-ras Harvey rat sarcoma viral oncogene homolog i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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