Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7657166
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657166 homeobox C11 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657166 homeobox C11 [Homo sapiens] 634 0.0
gi|5031759 homeobox A11 [Homo sapiens] 283 2e-76
gi|23510368 homeobox D11 [Homo sapiens] 231 8e-61
gi|182765442 homeobox A10 isoform a [Homo sapiens] 109 3e-24
gi|24497533 homeobox C10 [Homo sapiens] 105 6e-23
gi|23510366 homeobox D10 [Homo sapiens] 101 7e-22
gi|23097236 homeobox A9 [Homo sapiens] 101 9e-22
gi|194363768 homeobox D9 [Homo sapiens] 100 2e-21
gi|24497547 homeobox C9 [Homo sapiens] 100 2e-21
gi|27804315 homeobox C12 [Homo sapiens] 99 6e-21
gi|15029508 homeobox B9 [Homo sapiens] 97 2e-20
gi|24497551 homeobox A10 isoform b [Homo sapiens] 95 7e-20
gi|19923391 homeobox D3 [Homo sapiens] 88 1e-17
gi|194353946 homeobox D12 [Homo sapiens] 87 2e-17
gi|10140847 homeobox A2 [Homo sapiens] 87 2e-17
gi|15029506 homeobox D8 [Homo sapiens] 84 1e-16
gi|24497554 homeobox A13 [Homo sapiens] 84 1e-16
gi|4504465 homeobox B2 [Homo sapiens] 83 3e-16
gi|13273315 homeobox B4 [Homo sapiens] 81 1e-15
gi|148613882 homeobox A4 [Homo sapiens] 81 1e-15
gi|12056969 homeobox C8 [Homo sapiens] 80 2e-15
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 80 3e-15
gi|116734702 homeobox D13 [Homo sapiens] 80 3e-15
gi|24497536 homeobox C13 [Homo sapiens] 80 3e-15
gi|24497513 homeobox A3 isoform a [Homo sapiens] 79 4e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens] 79 4e-15
gi|24497515 homeobox A3 isoform b [Homo sapiens] 79 5e-15
gi|13273317 homeobox B8 [Homo sapiens] 79 6e-15
gi|62865866 homeobox B13 [Homo sapiens] 78 8e-15
gi|18959212 GS homeobox 2 [Homo sapiens] 77 1e-14
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 634 bits (1634), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS 60
MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS
Sbjct: 1 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS 60
Query: 61 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS 120
YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS
Sbjct: 61 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS 120
Query: 121 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE 180
YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE
Sbjct: 121 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE 180
Query: 181 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS 240
PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS
Sbjct: 181 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS 240
Query: 241 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG 300
KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG
Sbjct: 241 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG 300
Query: 301 NPLL 304
NPLL
Sbjct: 301 NPLL 304
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 283 bits (723), Expect = 2e-76
Identities = 160/317 (50%), Positives = 203/317 (64%), Gaps = 38/317 (11%)
Query: 21 DFGERGSCASNLYLPSCTYYM--PEFSTVSSFLPQAPS-RQISYPYSAQVP---PVREVS 74
DF ERG C+SN+YLPSCTYY+ P+FS++ SFLPQ PS R ++Y YS+ +P PVREV+
Sbjct: 2 DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVT 61
Query: 75 ---YGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVT----EILMKNEGSYGGHHHP 127
Y +EP+ KWH R + + CY+A +EL+HR+CL + ++L K+ + +HHP
Sbjct: 62 FREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAAGVPGDVLAKSSANV--YHHP 118
Query: 128 SAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPAS 187
+ A + FYS+V +N VLPQAFD+FF+ AY + + K KG P A S
Sbjct: 119 TP--AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATS 176
Query: 188 GLASRAEAGAEA-------------------EAEEENTNPSSSGSAHSVAKEPA-KGAAP 227
A+ A GA A E +E P SS S S + K
Sbjct: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGS 236
Query: 228 NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 287
+ RTRKKRCPY+K+QIRELEREFFF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE
Sbjct: 237 SGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 296
Query: 288 KKLSRDRLQYFSGNPLL 304
KK++RDRLQY+S NPLL
Sbjct: 297 KKINRDRLQYYSANPLL 313
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 231 bits (588), Expect = 8e-61
Identities = 150/338 (44%), Positives = 189/338 (55%), Gaps = 58/338 (17%)
Query: 21 DFGERGSCASNLYLPSCTYYMP--EFSTVSSFLPQAPSRQISYPYSAQ----VPPVREVS 74
DF E G A+++YLP C YY+ +F++ SFL Q S Q+++PYS+ V PVREV+
Sbjct: 3 DFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVA 62
Query: 75 ---YGLEPSGKWHHRNS------------------------YSSCYAAA----------- 96
YGLE + KW +R Y+ YAAA
Sbjct: 63 FRDYGLERA-KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAE 121
Query: 97 DELMHRECLPPS-TVTEILMKN-EGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRF 154
+ M RE LPP+ ++L K E P P + FYS+V +N +LPQ FD+F
Sbjct: 122 EAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQF 181
Query: 155 FDNA----YCGGGDPPAEPPCSGKGEA-KGEPEAPPASGLAS---RAEAGAEAEAEEENT 206
++ A + G PP P +G A KG+P G S +A G+E + E +
Sbjct: 182 YEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGS 241
Query: 207 NPSSSGSAHSVAKEPAKGAAPNAP-RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQL 265
G E + A AP R+RKKRCPY+K+QIRELEREFFFNVYINKEKRLQL
Sbjct: 242 GGDGEGPPGEAGAEKSSSAV--APQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQL 299
Query: 266 SRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPL 303
SRMLNLTDRQVKIWFQNRRMKEKKL+RDRLQYF+GNPL
Sbjct: 300 SRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 109 bits (273), Expect = 3e-24
Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG 224
PP C G ++G+ EA +S S AE + A +E +P +S + A
Sbjct: 274 PPPTLACGSGGGSQGDEEAHASS---SAAEELSPAPSESSKASPEKDSLGNSKGENAANW 330
Query: 225 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 284
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++SR ++LTDRQVKIWFQNRR
Sbjct: 331 LT--AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 388
Query: 285 MKEKKLSRD-RLQYFSGN 301
MK KK++R+ R++ + N
Sbjct: 389 MKLKKMNRENRIRELTAN 406
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 105 bits (261), Expect = 6e-23
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG 224
P ++ E K E G S +E A+A + + + S + + + E G
Sbjct: 202 PKSDSQTPSPNEIKTEQSLAGPKGSPSESEK-ERAKAADSSPDTSDNEAKEEIKAENTTG 260
Query: 225 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 284
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 285 MKEKKLSRD-RLQYFSGN 301
MK KK++R+ R++ + N
Sbjct: 321 MKLKKMNRENRIRELTSN 338
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 101 bits (252), Expect = 7e-22
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 170 PCSGKGEAK-GEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPN 228
P SG+ K + E+P A G E AE + S + +
Sbjct: 204 PVSGQEPTKVSQVESPEAKG-GLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT 262
Query: 229 APRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEK 288
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK K
Sbjct: 263 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLK 322
Query: 289 KLSRD-RLQYFSGN 301
K+SR+ R++ + N
Sbjct: 323 KMSRENRIRELTAN 336
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 101 bits (251), Expect = 9e-22
Identities = 48/103 (46%), Positives = 67/103 (65%)
Query: 192 RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREF 251
R + +E E N S G + +A TRKKRCPY+K Q ELE+EF
Sbjct: 166 REKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEF 225
Query: 252 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDR 294
FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+++DR
Sbjct: 226 LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 100 bits (249), Expect = 2e-21
Identities = 53/133 (39%), Positives = 83/133 (62%), Gaps = 19/133 (14%)
Query: 170 PCSGKGEAKG-----EPEA---PPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEP 221
P +G G A G EP A P G + + E ++ +++ +P++ + A+
Sbjct: 226 PGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARS- 284
Query: 222 AKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQ 281
TRKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQ
Sbjct: 285 ----------TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQ 334
Query: 282 NRRMKEKKLSRDR 294
NRRMK KK+S+++
Sbjct: 335 NRRMKMKKMSKEK 347
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 100 bits (248), Expect = 2e-21
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 173 GKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAP--NAP 230
G GE + P+ S R A + E + S +P+ A +A
Sbjct: 131 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHAR 190
Query: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
TRKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+
Sbjct: 191 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 250
Query: 291 SRDR 294
++++
Sbjct: 251 NKEK 254
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 98.6 bits (244), Expect = 6e-21
Identities = 90/276 (32%), Positives = 120/276 (43%), Gaps = 49/276 (17%)
Query: 38 TYYMPEFSTVSSFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAAD 97
T+Y P F + LP PS +SYP V + S EP N Y Y +
Sbjct: 23 TFYFPNFRASGAQLPGLPS--LSYPRRDNVCSLSWPS--AEPC------NGYPQPYLGSP 72
Query: 98 ELMHRECLPPSTVTEILMKNEGSYGGHHHPSA---------------PHATPAGFYSSVN 142
++ PP T L + E G + P A P A P +
Sbjct: 73 VSLN----PPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLE 128
Query: 143 KNSVLPQAFDRFFDNAYCGGGD-------PPAEPP-CSGKGEAKGEPEAPPASGLASRAE 194
+ P A +D A GGG PP +PP C E+ +S L +
Sbjct: 129 PSG--PPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSL-------ESDSSSSLLNEGN 179
Query: 195 AGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFN 254
GA A +P + G S + P P R+RKKR PYSK Q+ ELE EF N
Sbjct: 180 KGAGAGDPGSLVSPLNPGGGLSASGAPWY---PINSRSRKKRKPYSKLQLAELEGEFLVN 236
Query: 255 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
+I +++R +LS LNL+D+QVKIWFQNRRMK+K+L
Sbjct: 237 EFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 96.7 bits (239), Expect = 2e-20
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 121 YGGHHHPSAPHAT---PAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEA 177
+G P +PHA+ P+ ++ + V P A R+ + P G+
Sbjct: 59 FGASWAPLSPHASGSLPSVYHPYIQPQGV-PPAESRYL-RTWLEPAPRGEAAPGQGQAAV 116
Query: 178 KGEPEAPPASGLASRA------EAGAEAEAEEENTNPS------SSGSAHSVAKEPAKGA 225
K EP L + E A EA N P GS + +
Sbjct: 117 KAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPS 176
Query: 226 AP--NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNR 283
A +A +RKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNL++RQVKIWFQNR
Sbjct: 177 ANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNR 236
Query: 284 RMKEKKLSRDR 294
RMK KK+++++
Sbjct: 237 RMKMKKMNKEQ 247
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 95.1 bits (235), Expect = 7e-20
Identities = 43/70 (61%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 233 RKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSR 292
RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++SR ++LTDRQVKIWFQNRRMK KK++R
Sbjct: 21 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 80
Query: 293 D-RLQYFSGN 301
+ R++ + N
Sbjct: 81 ENRIRELTAN 90
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 87.8 bits (216), Expect = 1e-17
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 32/213 (15%)
Query: 101 HRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYC 160
H+ PP+ + + GS SAP PA + +N + + P N+
Sbjct: 47 HQPYPPPAAASSLDTDYPGS-ACSIQSSAPLRAPAHKGAELNGSCMRPGT-----GNSQG 100
Query: 161 GGGDPPAEPP-CSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAK 219
GGG ++PP + + + P PP +S G A++ P++S S+ +++K
Sbjct: 101 GGGG--SQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISK 158
Query: 220 -----------------------EPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVY 256
E + +P P +++ R Y+ Q+ ELE+EF FN Y
Sbjct: 159 QIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY 218
Query: 257 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 289
+ + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 219 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
>gi|194353946 homeobox D12 [Homo sapiens]
Length = 270
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 224 GAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNR 283
GAAP R RKKR PY+K QI ELE EF N +IN++KR +LS LNL+D+QVKIWFQNR
Sbjct: 196 GAAPG--RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNR 253
Query: 284 RMKEKKL 290
RMK+K++
Sbjct: 254 RMKKKRV 260
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 86.7 bits (213), Expect = 2e-17
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 32/203 (15%)
Query: 87 NSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSV 146
+++ S L H +PP I N GS+ H P +PAG ++ S
Sbjct: 30 DTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPAG-----SRGSP 84
Query: 147 LPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENT 206
+P G PP P K AK P A+ A+ A G + +E+
Sbjct: 85 VP-----------AGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESL 133
Query: 207 NPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLS 266
+ S R+ R Y+ Q+ ELE+EF FN Y+ + +R++++
Sbjct: 134 EIADGSGGGS----------------RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
Query: 267 RMLNLTDRQVKIWFQNRRMKEKK 289
+L+LT+RQVK+WFQNRRMK K+
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKR 200
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 84.3 bits (207), Expect = 1e-16
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPA-- 222
PP PPC G GEP R + E P S+ ++ ++P
Sbjct: 118 PPPPPPCGGIA-CHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHL 176
Query: 223 -KGAAPN----------APRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNL 271
+ ++P+ AP R+ R YS+FQ ELE+EF FN Y+ +++R+++S L L
Sbjct: 177 NQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALAL 236
Query: 272 TDRQVKIWFQNRRMKEKK 289
T+RQVKIWFQNRRMK KK
Sbjct: 237 TERQVKIWFQNRRMKWKK 254
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 84.3 bits (207), Expect = 1e-16
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 164 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 218
D P P G GE++ EP P A + +E P + V
Sbjct: 251 DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVV 310
Query: 219 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI 278
P+ A + R RKKR PY+K Q++ELERE+ N +I K+KR ++S NL++RQV I
Sbjct: 311 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 368
Query: 279 WFQNRRMKEKKL 290
WFQNRR+KEKK+
Sbjct: 369 WFQNRRVKEKKV 380
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 83.2 bits (204), Expect = 3e-16
Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSA--HSVAKEPA 222
PP PP P APPA E + + + T+PS + SA S PA
Sbjct: 80 PPPPPPL---------PAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPA 130
Query: 223 KGAA-PNAPR--TRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIW 279
G P A R+ R Y+ Q+ ELE+EF FN Y+ + +R++++ +L+LT+RQVK+W
Sbjct: 131 DGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVW 190
Query: 280 FQNRRMKEKKLSRDR 294
FQNRRMK K+ ++ R
Sbjct: 191 FQNRRMKHKRQTQHR 205
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 81.3 bits (199), Expect = 1e-15
Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENT-------NPSSSGSAHSV 217
PP PP G + P PPA L E G EA + NP +HS
Sbjct: 78 PPPPPPPPPPGLSPRAPAPPPAGALLP--EPGQRCEAVSSSPPPPPCAQNPLHPSPSHSA 135
Query: 218 AKEPA----------KGAAPN--APRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQL 265
KEP PN ++ R Y++ Q+ ELE+EF +N Y+ + +R+++
Sbjct: 136 CKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEI 195
Query: 266 SRMLNLTDRQVKIWFQNRRMKEKK 289
+ L L++RQ+KIWFQNRRMK KK
Sbjct: 196 AHALCLSERQIKIWFQNRRMKWKK 219
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 80.9 bits (198), Expect = 1e-15
Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 48/230 (20%)
Query: 106 PPSTVTEILMKNEGSY---GGHHHPSAPHATPAGFYSSVNKNSVLPQAF---DRFFDNAY 159
PP+ T+ L + GG P+A + P + L A D + Y
Sbjct: 45 PPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGY 104
Query: 160 CGGGDP-----PAEPPCSGKGEAKG-------EPEAPPASGLASRA---EAGAEAEAEEE 204
GG P P +PP KG A G +P+ PP L RA A EA
Sbjct: 105 RGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPP--LQPRAVPPAAPRRCEAAPA 162
Query: 205 NTNPSSSGSAHSV-------------AKEP------------AKGAAPNAPRTRKKRCPY 239
+ GSA + KEP A + N ++ R Y
Sbjct: 163 TPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAY 222
Query: 240 SKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 289
++ Q+ ELE+EF FN Y+ + +R++++ L L++RQVKIWFQNRRMK KK
Sbjct: 223 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 80.5 bits (197), Expect = 2e-15
Identities = 51/132 (38%), Positives = 67/132 (50%), Gaps = 9/132 (6%)
Query: 166 PAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEE----ENTNPSSSGSAH----SV 217
P C G EA P L + + + + NTN SS G H S
Sbjct: 76 PCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTN-SSEGQGHLNQNSS 134
Query: 218 AKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVK 277
P+AP R R YS++Q ELE+EF FN Y+ +++R+++S L LT+RQVK
Sbjct: 135 PSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVK 194
Query: 278 IWFQNRRMKEKK 289
IWFQNRRMK KK
Sbjct: 195 IWFQNRRMKWKK 206
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 79.7 bits (195), Expect = 3e-15
Identities = 49/112 (43%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 184 PPASGLASRAEAGAEAEAEEENTNP-----SSSGSAHSVAKEPAKGAAPNAPRTRKK-RC 237
PPA AE G EE N S AH+ + A GA P K+ R
Sbjct: 95 PPAGPFPEGAEPGV---LEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRT 151
Query: 238 PYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 289
Y++ Q+ ELE+EF FN YI++ +R++L+ MLNLT+R +KIWFQNRRMK KK
Sbjct: 152 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 79.7 bits (195), Expect = 3e-15
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
R RKKR PY+K Q++ELE E+ N +INK+KR ++S NL++RQV IWFQNRR+K+KK+
Sbjct: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 79.7 bits (195), Expect = 3e-15
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 125 HHPSAPHATPAGFYSSVNKNSVLPQ-AFDRFFDNAYC---GGGDPPAEPPCSGKGEAKGE 180
+HP + P+G + +S + AF F ++Y G D P SG E + +
Sbjct: 147 YHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHD 206
Query: 181 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAP------RTRK 234
P G +++ + S SAH + K P P P R RK
Sbjct: 207 ALIPVEGYQHWALSNGWDSQVY---CSKEQSQSAH-LWKSPFPDVVPLQPEVSSYRRGRK 262
Query: 235 KRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
KR PY+K Q++ELE+E+ + +I KEKR ++S NL++RQV IWFQNRR+KEKK+
Sbjct: 263 KRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV 318
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 79.3 bits (194), Expect = 4e-15
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 18/138 (13%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEE-------------ENTNPSSS 211
P A PP S + P + A + A++ + T+ SSS
Sbjct: 116 PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSS 175
Query: 212 GSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNL 271
G + + K P P +++ R Y+ Q+ ELE+EF FN Y+ + +R++++ +LNL
Sbjct: 176 GESCAGDKSP-----PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 230
Query: 272 TDRQVKIWFQNRRMKEKK 289
T+RQ+KIWFQNRRMK KK
Sbjct: 231 TERQIKIWFQNRRMKYKK 248
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 79.3 bits (194), Expect = 4e-15
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 18/138 (13%)
Query: 165 PPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEE-------------ENTNPSSS 211
P A PP S + P + A + A++ + T+ SSS
Sbjct: 116 PAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSS 175
Query: 212 GSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNL 271
G + + K P P +++ R Y+ Q+ ELE+EF FN Y+ + +R++++ +LNL
Sbjct: 176 GESCAGDKSP-----PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 230
Query: 272 TDRQVKIWFQNRRMKEKK 289
T+RQ+KIWFQNRRMK KK
Sbjct: 231 TERQIKIWFQNRRMKYKK 248
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 79.0 bits (193), Expect = 5e-15
Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 5/87 (5%)
Query: 203 EENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKR 262
++ T+ SSSG + + K P P +++ R Y+ Q+ ELE+EF FN Y+ + +R
Sbjct: 9 KQKTSSSSSGESCAGDKSP-----PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRR 63
Query: 263 LQLSRMLNLTDRQVKIWFQNRRMKEKK 289
++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 64 VEMANLLNLTERQIKIWFQNRRMKYKK 90
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 78.6 bits (192), Expect = 6e-15
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 189 LASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKK-RCPYSKFQIREL 247
LA+ + G EAE E++ +P+ + P A R++ R YS++Q EL
Sbjct: 112 LAAASGLGEEAEGSEQSPSPT----------QLFPWMRPQAAAGRRRGRQTYSRYQTLEL 161
Query: 248 EREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 289
E+EF FN Y+ +++R+++S L LT+RQVKIWFQNRRMK KK
Sbjct: 162 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK 203
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 78.2 bits (191), Expect = 8e-15
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
R RKKR PYSK Q+RELERE+ N +I K+KR ++S +L++RQ+ IWFQNRR+KEKK+
Sbjct: 215 RGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 77.4 bits (189), Expect = 1e-14
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 104 CLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFF----DNAY 159
C+ P VT L + GS G + T AG LP +F D +
Sbjct: 59 CVCPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF 118
Query: 160 CGGGDPPAE----PPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAH 215
C + P +P + A+ A+ A A A A ++ P + + +
Sbjct: 119 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY 178
Query: 216 SVAKEPAK--------GAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSR 267
+VA +P + A P ++ R ++ Q+ ELEREF N+Y+++ +R++++
Sbjct: 179 NVA-DPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIAT 237
Query: 268 MLNLTDRQVKIWFQNRRMKEKK 289
LNL+++QVKIWFQNRR+K KK
Sbjct: 238 YLNLSEKQVKIWFQNRRVKHKK 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,328,373
Number of Sequences: 37866
Number of extensions: 762789
Number of successful extensions: 4955
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 4039
Number of HSP's gapped (non-prelim): 1115
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.