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Search of human proteins with 74099697
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
(449 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 928 0.0
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 928 0.0
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 900 0.0
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 646 0.0
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 646 0.0
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 646 0.0
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 646 0.0
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 646 0.0
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 646 0.0
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 413 e-115
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 391 e-109
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 201 1e-51
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 179 5e-45
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 130 2e-30
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 130 2e-30
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 130 2e-30
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 130 2e-30
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 130 2e-30
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 117 2e-26
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 85 2e-16
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 82 8e-16
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 82 8e-16
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 74 3e-13
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 74 3e-13
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 74 3e-13
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 58 2e-08
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 58 2e-08
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 58 2e-08
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 53 5e-07
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 53 6e-07
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 928 bits (2398), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
GGGYGGQSSMSGYDQVLQENSSDYQSNLA
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 928 bits (2398), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
GGGYGGQSSMSGYDQVLQENSSDYQSNLA
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 900 bits (2327), Expect = 0.0
Identities = 432/449 (96%), Positives = 441/449 (98%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML TEG EGFVVKVRGLPWSCSADEV RFFSDCKIQNG GIRFIYTREGRPSGEAFVE
Sbjct: 1 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
LESE+EVKLALKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPF
Sbjct: 61 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GCSKEEIVQFFSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
Sbjct: 121 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
Sbjct: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGYDDY GYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRA
Sbjct: 241 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
LNSTAG SGGAY+H YVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
Sbjct: 361 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY 420
Query: 421 GGGYGGQSSMSGYDQVLQENSSDYQSNLA 449
GGGYGGQSSMSGYDQVLQENSSD+QSN+A
Sbjct: 421 GGGYGGQSSMSGYDQVLQENSSDFQSNIA 449
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 646 bits (1667), Expect = 0.0
Identities = 313/435 (71%), Positives = 357/435 (82%), Gaps = 21/435 (4%)
Query: 1 MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVE 60
MML EG EGFVVK+RGLPWSCS ++V F SDC I +G +G+ FIYTREGR SGEAFVE
Sbjct: 1 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 60
Query: 61 LESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPF 120
L SE++VK+ALKKDRE+MGHRY+EVFKS+ EMDWVLKH+GPNS D+ANDGFVRLRGLPF
Sbjct: 61 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF 120
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 180
GC+KEEIVQFFSGLEIVPNG+TLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRY
Sbjct: 121 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 180
Query: 181 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY 240
IE+FKSS+ EVR++ DPP K M++QRPGPYDRPG R Y I + AG ERMR GAY GY
Sbjct: 181 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY 240
Query: 241 GGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA 300
GGY++Y G +DGYGF +D FGRDL+YC SGM DHRYGD + QSTTGHCVHMRGLPY+A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300
Query: 301 TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
TENDIYNFFSPLNP+RVHIEIGPDGRVTGEADVEFATHE+AVAAM+KD+ANMQHRY+ELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
Query: 361 LNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLS-NQSSYGGPASQQLSGG 419
LNS T GAS GAY SQ+M GMG+S Q++Y G SQ +SG
Sbjct: 361 LNS--------------------TTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGC 400
Query: 420 YGGGYGGQSSMSGYD 434
YG GY GQ+SM GYD
Sbjct: 401 YGAGYSGQNSMGGYD 415
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 413 bits (1061), Expect = e-115
Identities = 218/347 (62%), Positives = 246/347 (70%), Gaps = 32/347 (9%)
Query: 93 MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152
MDWV+KH GPN A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNG+TL +D+QGRST
Sbjct: 1 MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 212
GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++ YDPPR+L+ QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 PGAGR-GYNSIGRGAGFERMRRG--AYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFS 269
P GR GY GRG+ ++RMRRG Y GGYGG+DDYGGYN+ YG+G+D F D
Sbjct: 117 PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNN-YGYGNDGFD-DRMRDGR 174
Query: 270 GMSDHRY---GDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGR 326
GM H Y GD S F GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR
Sbjct: 175 GMGGHGYGGAGDASSGFHG--GHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGR 232
Query: 327 VTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAG 386
TGEADVEF THEDAVAAM+KDK NMQHRY+ELFLNST G G G
Sbjct: 233 ATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG-------------MGG 279
Query: 387 ASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY 433
+ G YG G+ NQ YG + Y GGYG + GY
Sbjct: 280 SGMGGYGRD-----GMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGY 321
Score = 74.3 bits (181), Expect = 2e-13
Identities = 55/155 (35%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 112 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
FV +RGLPF ++ +I FFS L P + + + GR+TGEA V+F + E A A+ K
Sbjct: 196 FVHMRGLPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 253
Query: 172 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGRGAGFE 229
K + HRYIE+F +S + M G Y R G GY S+GR G
Sbjct: 254 DKNNMQHRYIELFLNSTPGGGSG-------MGGSGMGGYGRDGMDNQGGYGSVGR-MGMG 305
Query: 230 RMRRGAYG------------GGYGGYDDYGGYNDG 252
G YG GG GGY GG + G
Sbjct: 306 NNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGG 340
Score = 70.9 bits (172), Expect = 2e-12
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
V++RGLP+ CS +E+++FF +I +GI +GR +GEAFV+ S+E + AL
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 73 KDRETMGHRYVEVFKSNSVEM 93
K +E +GHRY+E+F+S+ E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 70.1 bits (170), Expect = 4e-12
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 34/159 (21%)
Query: 291 VHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V +RGLP+ ++ +I FF L P + + + GR TGEA V+FA+ E A A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 349 KANMQHRYVELFLNSTAGTSG-------------GAYDHSYVELFLNSTAGASGGAYGSQ 395
K + HRY+E+F +S + G G YD G GG YG+
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPI---------GGRGGYYGA- 127
Query: 396 MMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYD 434
G + ++ GG GY GGYGG GY+
Sbjct: 128 --GRGSMYDRMRRGGD-------GYDGGYGGFDDYGGYN 157
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
G V +RGLP+ + +++ FFS + +GR +GEA VE + E+
Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLN----PIRVHIDIGADGRATGEADVEFVTHEDAVA 249
Query: 70 ALKKDRETMGHRYVEVFKSNS 90
A+ KD+ M HRY+E+F +++
Sbjct: 250 AMSKDKNNMQHRYIELFLNST 270
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 391 bits (1004), Expect = e-109
Identities = 210/345 (60%), Positives = 236/345 (68%), Gaps = 43/345 (12%)
Query: 93 MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152
MDWV+KH GPN A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNG+TL +D+QGRST
Sbjct: 1 MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57
Query: 153 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 212
GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++ YDPPR+L+ QRPGPYDR
Sbjct: 58 GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116
Query: 213 PGAGR-GYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGM 271
P GR GY GRG+ YGG+DDYGGYN+ YG+G+D F D GM
Sbjct: 117 PIGGRGGYYGAGRGS-------------YGGFDDYGGYNN-YGYGNDGFD-DRMRDGRGM 161
Query: 272 SDHRY---GDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
H Y GD S F GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR T
Sbjct: 162 GGHGYGGAGDASSGFHG--GHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 219
Query: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGAS 388
GEADVEF THEDAVAAM+KDK NMQHRY+ELFLNST G G G+
Sbjct: 220 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG-------------MGGSG 266
Query: 389 GGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY 433
G YG G+ NQ YG + Y GGYG + GY
Sbjct: 267 MGGYGRD-----GMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGY 306
Score = 78.2 bits (191), Expect = 1e-14
Identities = 85/323 (26%), Positives = 122/323 (37%), Gaps = 98/323 (30%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPS------------------ 54
V++RGLP+ CS +E+++FF +I +GI +GR +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 55 ------GEAFVEL--ESEEEVKLALKKDRETMGHR-------------YVEVFKSNSVEM 93
G ++E+ S E+K R +G R Y + +
Sbjct: 76 KHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSYGGF 135
Query: 94 DWVLKHTGPNSPDTANDGF------------------------------VRLRGLPFGCS 123
D + G N+ NDGF V +RGLPF +
Sbjct: 136 D---DYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRAT 192
Query: 124 KEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 183
+ +I FFS L P + + + GR+TGEA V+F + E A A+ K K + HRYIE+
Sbjct: 193 ENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIEL 250
Query: 184 FKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGRGAGFERMRRGAYG---- 237
F +S + M G Y R G GY S+GR G G YG
Sbjct: 251 FLNSTPGGGSG-------MGGSGMGGYGRDGMDNQGGYGSVGR-MGMGNNYSGGYGTPDG 302
Query: 238 --------GGYGGYDDYGGYNDG 252
GG GGY GG + G
Sbjct: 303 LGGYGRGGGGSGGYYGQGGMSGG 325
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
G V +RGLP+ + +++ FFS + +GR +GEA VE + E+
Sbjct: 179 GHFVHMRGLPFRATENDIANFFSPLN----PIRVHIDIGADGRATGEADVEFVTHEDAVA 234
Query: 70 ALKKDRETMGHRYVEVFKSNS 90
A+ KD+ M HRY+E+F +++
Sbjct: 235 AMSKDKNNMQHRYIELFLNST 255
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 201 bits (510), Expect = 1e-51
Identities = 97/193 (50%), Positives = 141/193 (73%), Gaps = 3/193 (1%)
Query: 3 LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62
L E + F+++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+E
Sbjct: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
Query: 63 SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122
SE++V+ AL+K R MG RYVEV++ N+ ++D ++K S NDG VRLRGLP+ C
Sbjct: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
Query: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
++++IV FF+GL IV +T +D++G R TGEA+VQF E+A +AL KH+E IG+RYI
Sbjct: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
Query: 182 EIFKSSRAEVRTH 194
EIF S R EVRTH
Sbjct: 320 EIFPSRRNEVRTH 332
Score = 106 bits (264), Expect = 5e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 349 KANMQHRYVELFLNS 363
++++ HRY+ELFLNS
Sbjct: 461 RSHVHHRYIELFLNS 475
Score = 93.6 bits (231), Expect = 3e-19
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70
VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
Query: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104
L K RE +G+RY+E+F S E + V + N
Sbjct: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366
Query: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425
Query: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349
V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 350 ANMQHRYVELF 360
+ +RY+E+F
Sbjct: 312 EEIGNRYIEIF 322
Score = 46.2 bits (108), Expect = 6e-05
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMA 346
+ +GLP+ T D+ NFFS +H + DG+ G+A +E + +D A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
Query: 347 KDKANMQHRYVELF 360
K + M RYVE++
Sbjct: 212 KHRMYMGQRYVEVY 225
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 179 bits (454), Expect = 5e-45
Identities = 88/171 (51%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 25 DEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVE 84
++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+ESE++V+ AL+K R MG RYVE
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 85 VFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP 144
V++ N+ ++D ++K S NDG VRLRGLP+ C++++IV FF+GL IV +T
Sbjct: 62 VYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFV 119
Query: 145 VDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTH 194
+D++G R TGEA+VQF E+A +AL KH+E IG+RYIEIF S R EVRTH
Sbjct: 120 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
Score = 106 bits (264), Expect = 5e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
Query: 349 KANMQHRYVELFLNS 363
++++ HRY+ELFLNS
Sbjct: 299 RSHVHHRYIELFLNS 313
Score = 93.6 bits (231), Expect = 3e-19
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70
VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
Query: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104
L K RE +G+RY+E+F S E + V + N
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
Query: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 263
Query: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 264 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349
V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
Query: 350 ANMQHRYVELF 360
+ +RY+E+F
Sbjct: 150 EEIGNRYIEIF 160
Score = 37.0 bits (84), Expect = 0.036
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 304 DIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 359
D+ NFFS +H + DG+ G+A +E + +D A+ K + M RYVE+
Sbjct: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
Query: 360 F 360
+
Sbjct: 63 Y 63
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 130 bits (327), Expect = 2e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 117 bits (294), Expect = 2e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 AKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MAKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVEL-------FLNSTAGTS 368
K +M RY+E+ FL GTS
Sbjct: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 130 bits (327), Expect = 2e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 117 bits (294), Expect = 2e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 AKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MAKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVEL-------FLNSTAGTS 368
K +M RY+E+ FL GTS
Sbjct: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 130 bits (327), Expect = 2e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 117 bits (294), Expect = 2e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 AKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MAKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVEL-------FLNSTAGTS 368
K +M RY+E+ FL GTS
Sbjct: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 130 bits (327), Expect = 2e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 117 bits (294), Expect = 2e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 AKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MAKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVEL-------FLNSTAGTS 368
K +M RY+E+ FL GTS
Sbjct: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 130 bits (327), Expect = 2e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
Query: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
Query: 180 YIEIFKSSRAEVR 192
YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410
Score = 117 bits (294), Expect = 2e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 171 K-HKERIGHRYIEIFKSSRAEV 191
K HK+ + RY+E+F+ S E+
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEM 528
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 346 AKDKANMQHRYVELFLNSTA 365
K K + RY+ELF ++ A
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 345 MAKDKANMQHRYVELF 360
K NM+ RYVE+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 349 KANMQHRYVEL-------FLNSTAGTS 368
K +M RY+E+ FL GTS
Sbjct: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 117 bits (294), Expect = 2e-26
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
VV+ RGLPW S +V RFF + G G+ +GR +GEA + E+ LAL
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
++ + MG RY+EV+K+ E +K G S + A + +RLRGLPF
Sbjct: 306 QRHKHHMGVRYIEVYKATGEEF---VKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPT 362
Query: 126 EIVQFFSGLEIVPNGMTLPVDF----QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
+++ F G E G T + F GR TG+AF FA +E+A+ AL++HK +G RYI
Sbjct: 363 DVLGFL-GPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
Query: 182 EIFKSSRAEVR 192
E+F+S+ AEV+
Sbjct: 422 ELFRSTAAEVQ 432
Score = 112 bits (279), Expect = 9e-25
Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 12 VVKVRGLPWSCSADEVMRFFS-DCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
++++RGLP+S +V+ F +C + GT G+ F+ +GRP+G+AF EE + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKHTG-----------------PNSPDTANDGFV 113
L++ + +G RY+E+F+S + E+ VL P +P T D V
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD-CV 467
Query: 114 RLRGLPFGCSKEEIVQFF--SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
RLRGLP+ + E+I+ F + +I P+G+ + ++ QGR +G+AF+Q S E A A ++
Sbjct: 468 RLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQR 527
Query: 172 -HKERIGHRYIEIFKSSRAEV 191
HK+ + RY+E+ S E+
Sbjct: 528 CHKKVMKERYVEVVPCSTEEM 548
Score = 73.6 bits (179), Expect = 4e-13
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 100 TGPNSPDTANDG--FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFV 157
TGP S D VR RGLP+ S +++ +FF GL + G+ L ++ QGR GEA +
Sbjct: 234 TGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALI 293
Query: 158 QFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
+F E + AL++HK +G RYIE++K++ E
Sbjct: 294 RFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
V++RGLP++ + ++++ F + G+ + ++GRPSG+AF+++ S E A +
Sbjct: 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
Query: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
+ ++ M RYVEV ++ EM VL
Sbjct: 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
Score = 53.1 bits (126), Expect = 5e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
CV +RGLPY AT DI +F + + P VH+ + GR +G+A ++ + E A+AA
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
Query: 346 AK-DKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASG 389
+ K M+ RYVE+ ST S + + T G SG
Sbjct: 526 QRCHKKVMKERYVEVVPCSTEEMS---------RVLMGGTLGRSG 561
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIE-----IGPDGRVTGEADVEFATHEDAVAAM 345
+ +RGLP+ A D+ F P P+ E PDGR TG+A FA E A AA+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 346 AKDKANMQHRYVELFLNSTA 365
+ K + RY+ELF ++ A
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 46.6 bits (109), Expect = 5e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
V RGLP+++++ D+ FF LN R V + + GR GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRH 308
Query: 349 KANMQHRYVELF 360
K +M RY+E++
Sbjct: 309 KHHMGVRYIEVY 320
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 84.7 bits (208), Expect = 2e-16
Identities = 78/256 (30%), Positives = 117/256 (45%), Gaps = 36/256 (14%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL GLPF +I FF+GL I G V G GEAF+ FA+ E A +A+ +
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGG----VHIIGGEIGEAFIIFATDEDARRAISRS 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGF-ERM 231
I +E+F SS+AE++ K + M+R R G G + + + F E +
Sbjct: 61 GGFIKDSSVELFLSSKAEMQ-------KTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESV 113
Query: 232 RRGAYGGGYGGY--DDYGGYNDGYGFGS--DRFGRDLNYCFSGMSDHRYGDGGSSFQSTT 287
+ A GYG D G + +G G G+ R R L +++ Y
Sbjct: 114 KEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLK------AENPY----------- 156
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
+ +RGLPY E+D+ FFS L V DGR G+A V+FA+ DA +
Sbjct: 157 ---LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKC 213
Query: 348 DKANMQHRYVELFLNS 363
++ M R++E+ S
Sbjct: 214 HRSFMGSRFIEVMQGS 229
Score = 60.5 bits (145), Expect = 3e-09
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 66/237 (27%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
V+++ GLP+ ++ FF+ I +G G+ I G GEAF+ ++E+ + A+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57
Query: 72 KKDRETMGHRYVEVFKSNSVEMDWVLK-----HTGPNSPDTANDG--------------- 111
+ + VE+F S+ EM ++ G P + G
Sbjct: 58 SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117
Query: 112 --------------------------------------FVRLRGLPFGCSKEEIVQFFSG 133
++ LRGLP+ +++++ FFSG
Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177
Query: 134 LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190
L + +G+ GR+ G+A V+FAS A LK H+ +G R+IE+ + S +
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQ 232
Score = 60.5 bits (145), Expect = 3e-09
Identities = 80/365 (21%), Positives = 134/365 (36%), Gaps = 101/365 (27%)
Query: 15 VRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKD 74
+RGLP+ + D+V FFS + G+ F+ +GR +G+A V+ S + LK
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 75 RETMGHRYVEV----------FKSNSVEMDWVLKHTGPNSPDTA-NDG------------ 111
R MG R++EV F N+V+ VL+ + +SP ND
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 112 ----------FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 161
+V L+ L + ++ FF G ++ + + R T AFV F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 162 QEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNS 221
+ AL HK + +R + H DP + ++ Y++
Sbjct: 334 LKDYNTALSLHKTVLQYRPV------------HIDPISRKQMLKFIARYEKK-------- 373
Query: 222 IGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS 281
R ER R G +Y G+
Sbjct: 374 --RSGSLERDR------------------------------------PGHVSQKYSQEGN 395
Query: 282 SFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHE 339
S Q C+++R P+ T+ ++ FF+ L +++ G GEA V+F + E
Sbjct: 396 SGQKL---CIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEE 452
Query: 340 DAVAA 344
A+ A
Sbjct: 453 QAMKA 457
Score = 54.3 bits (129), Expect = 2e-07
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 50/256 (19%)
Query: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
P A + ++ LRGLP+ +++++ FFSGL + +G+ GR+ G+A V+FAS
Sbjct: 149 PLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVD 206
Query: 165 AEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGR 224
A LK H+ +G R+IE+ + S ++ G N++
Sbjct: 207 ASGGLKCHRSFMGSRFIEVMQGS-----------------------EQQWIEFGGNAVKE 243
Query: 225 GAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQ 284
G R + G +DR R + H + +
Sbjct: 244 GDVLRRSEEHSPPRGI----------------NDRHFRKRS--------HSKSPRRTRSR 279
Query: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE-IGPDGRVTGEADVEFATHEDAVA 343
S G VH++ L E D+ NFF + I + D T A V F T +D
Sbjct: 280 SPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNT 339
Query: 344 AMAKDKANMQHRYVEL 359
A++ K +Q+R V +
Sbjct: 340 ALSLHKTVLQYRPVHI 355
Score = 52.4 bits (124), Expect = 8e-07
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
GF V ++ L S ++ FF + + IRF+Y E R + AFV ++ ++
Sbjct: 283 GFYVHLKNLSLSIDERDLRNFFRGTDLTD--EQIRFLYKDENR-TRYAFVMFKTLKDYNT 339
Query: 70 ALKKDRETMGHRYVEVF-----------------KSNSVEMDWVLKHTGPNSPDTANDG- 111
AL + + +R V + +S S+E D H N G
Sbjct: 340 ALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRP-GHVSQKYSQEGNSGQ 398
Query: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
+ +R PF +K E+ +FF+ + + + L D +G GEA V+F S+E A KA
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAE 458
Query: 170 KKHKER 175
+ ++ R
Sbjct: 459 RLNRRR 464
Score = 45.8 bits (107), Expect = 8e-05
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+++ LPF + EI+ FF G I+P+ +++ + QG TGEA V + A A+K
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 173 KER-IGHRYIEI 183
+R +G R +++
Sbjct: 987 NDRPVGPRKVKL 998
Score = 40.0 bits (92), Expect = 0.004
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ + GLP+ A DI +FF+ L PDG V GEA + FAT EDA A
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTI--------PDGGVHIIGGEIGEAFIIFATDEDARRA 56
Query: 345 MAKDKANMQHRYVELFLNSTA 365
+++ ++ VELFL+S A
Sbjct: 57 ISRSGGFIKDSSVELFLSSKA 77
Score = 36.6 bits (83), Expect = 0.048
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 236 YGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRG 295
+G GG D+G +N G F RF M D + G + +
Sbjct: 888 FGRPEGGKFDFGKHNMG-SFPEGRF----------MPDPKINCGSGRVTP-----IKIMN 931
Query: 296 LPYRATENDIYNFFS--PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
LP++A N+I +FF + P V I+ G TGEA V + +A+AA+
Sbjct: 932 LPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI 983
Score = 36.2 bits (82), Expect = 0.062
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
+K+ LP+ + +E++ FF +I + I+ Y +G P+GEA V + + E A+K
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQ--YNEQGLPTGEAIVAMINYNEAMAAIK 984
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 82.4 bits (202), Expect = 8e-16
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
GF V ++GLP+ V+ FF K+ I Y G+ +GE FVE +E + K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRETMGHRYVEVF----KSNSVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
+++ R + + ++R +PP +K + M PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 82.0 bits (201), Expect = 1e-15
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
V V G+P+S ++V FF ++ + + GR +G V+ S ++ ALK
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query: 73 KDRETMGHRYVEVFKSNSVEMDWVL--------KHTGPNS-----PDTA----------- 108
++R M RYVEV S + E WV ++ GP+ P T
Sbjct: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 160
GF V L+GLPF + ++ FF L+IV + + + G++TGE FV+F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
Query: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
G CV+++GLP+ A + +FF L+ + ++I GP+G+ TGE VEF D AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 AKDKANMQHRYVEL 359
+ K M +R++++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEI 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
Query: 165 AEKALKKHKERIGHRYIEI 183
+ALK+++ + RY+E+
Sbjct: 356 TFEALKRNRMLMIQRYVEV 374
Score = 45.8 bits (107), Expect = 8e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYVEL 359
M RYVE+
Sbjct: 366 LMIQRYVEV 374
Score = 45.1 bits (105), Expect = 1e-04
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 4 STEGREG-FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62
S+ G+ G V+KV+ +P++ S DE++ FF ++ G+ ++ Y +G P+GEA V E
Sbjct: 848 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFE 905
Query: 63 SEEEVKLAL 71
S +E A+
Sbjct: 906 SRDEATAAV 914
Score = 42.7 bits (99), Expect = 7e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
I + + SS+ E++ + R+
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 37.0 bits (84), Expect = 0.036
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 290 CVHMRGLPYRATENDIYNFFS--PLNPMRVHIEIGPDGRVTGEADVEFATHEDA 341
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 598
Score = 36.6 bits (83), Expect = 0.048
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
V++++GLP ++ FFS I +G G+ + G GEAF+ ++E+ +L +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRETMGHRYVEVFKSNSVEM 93
+ T+ V + S+ EM
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEM 79
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MAKDKANMQHRYVELFLNS 363
M + ++ V L L+S
Sbjct: 57 MMRTGGTIKGSKVTLLLSS 75
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 82.4 bits (202), Expect = 8e-16
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
GF V ++GLP+ V+ FF K+ I Y G+ +GE FVE +E + K
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
Query: 70 ALKKDRETMGHRYVEVF----KSNSVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
Query: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
+++ R + + ++R +PP +K + M PG PG
Sbjct: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
Score = 82.0 bits (201), Expect = 1e-15
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
V V G+P+S ++V FF ++ + + GR +G V+ S ++ ALK
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query: 73 KDRETMGHRYVEVFKSNSVEMDWVL--------KHTGPNS-----PDTA----------- 108
++R M RYVEV S + E WV ++ GP+ P T
Sbjct: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 160
GF V L+GLPF + ++ FF L+IV + + + G++TGE FV+F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
Query: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 288 GHCVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
G CV+++GLP+ A + +FF L+ + ++I GP+G+ TGE VEF D AA+
Sbjct: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
Query: 346 AKDKANMQHRYVEL 359
+ K M +R++++
Sbjct: 489 CRHKQYMGNRFIQV 502
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 173 KER-IGHRYIEI 183
+R IG R +++
Sbjct: 918 NDRPIGSRKVKL 929
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
Query: 165 AEKALKKHKERIGHRYIEI 183
+ALK+++ + RY+E+
Sbjct: 356 TFEALKRNRMLMIQRYVEV 374
Score = 45.8 bits (107), Expect = 8e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 351 NMQHRYVEL 359
M RYVE+
Sbjct: 366 LMIQRYVEV 374
Score = 45.1 bits (105), Expect = 1e-04
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 4 STEGREG-FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62
S+ G+ G V+KV+ +P++ S DE++ FF ++ G+ ++ Y +G P+GEA V E
Sbjct: 848 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFE 905
Query: 63 SEEEVKLAL 71
S +E A+
Sbjct: 906 SRDEATAAV 914
Score = 42.7 bits (99), Expect = 7e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
I + + SS+ E++ + R+
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 37.0 bits (84), Expect = 0.036
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 290 CVHMRGLPYRATENDIYNFFS--PLNPMRVHIEIGPDGRVTGEADVEFATHEDA 341
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 598
Score = 36.6 bits (83), Expect = 0.048
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
V++++GLP ++ FFS I +G G+ + G GEAF+ ++E+ +L +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
Query: 72 KKDRETMGHRYVEVFKSNSVEM 93
+ T+ V + S+ EM
Sbjct: 58 MRTGGTIKGSKVTLLLSSKTEM 79
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
Query: 345 MAKDKANMQHRYVELFLNS 363
M + ++ V L L+S
Sbjct: 57 MMRTGGTIKGSKVTLLLSS 75
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 73.9 bits (180), Expect = 3e-13
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
VK+RG P++ + VM F + K IR + G +G FV+ +EEEVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNSV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ +V W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 60.1 bits (144), Expect = 4e-09
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL P+ + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMAKDKANMQHRYVELFLNSTAGTSGGA 371
A+ ++ M RY+E+F T+ GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P + + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 73.9 bits (180), Expect = 3e-13
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
VK+RG P++ + VM F + K IR + G +G FV+ +EEEVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNSV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ +V W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 60.1 bits (144), Expect = 4e-09
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL P+ + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMAKDKANMQHRYVELFLNSTAGTSGGA 371
A+ ++ M RY+E+F T+ GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P + + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 73.9 bits (180), Expect = 3e-13
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
VK+RG P++ + VM F + K IR + G +G FV+ +EEEVK ALK
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 351
Query: 73 KDRETMGHRYVEVFKSNSV----------EMDWVLKHTGPN--SPDTANDGFVRLRGLPF 120
+RE MG RY+EVF+ +V W + G N D A G + +R LP+
Sbjct: 352 CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query: 121 GCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKA 168
++E++ + FS + + + P+D + G AF+ F E A KA
Sbjct: 412 TSTEEDLEKLFSKYGPL-SELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Score = 60.1 bits (144), Expect = 4e-09
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVA 343
+ TT H V +RG P+ TE ++ F +PL P+ + I G TG V+F+ E+
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 348
Query: 344 AMAKDKANMQHRYVELFLNSTAGTSGGA 371
A+ ++ M RY+E+F T+ GA
Sbjct: 349 ALKCNREYMGGRYIEVFREKNVPTTKGA 376
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
V+LRG PF +++ +++F + L+ P + + + G TG FV F+++E ++ALK +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 173 KERIGHRYIEIFK 185
+E +G RYIE+F+
Sbjct: 354 REYMGGRYIEVFR 366
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 58.2 bits (139), Expect = 2e-08
Identities = 68/238 (28%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 207 PGPYDRPGAGRG--YNSIGRGAGFERMRRGAY---GGGYGGYDDYGGYNDGYGFGSDRFG 261
P P + G GRG GRG GF G Y G GYG Y GYG S G
Sbjct: 638 PPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSY--------GYGGNSATAG 689
Query: 262 RDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEI 321
Y G S + G GG ++G+ + +G D YN SP+ P +
Sbjct: 690 YSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQG--------DNYN--SPVPPKHAGKKQ 739
Query: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFL 381
G+ + +H+ + + + G +Y +SY
Sbjct: 740 PHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHGQGSYSYSNSY----- 794
Query: 382 NSTAGASGGAYGSQ----MMGGMGLSNQSSYG-GPASQQ--LSGGYGGGYGGQSSMSG 432
NS G G Y + G G S +SYG G AS GGYGGG GG SS G
Sbjct: 795 NSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 852
Score = 45.4 bits (106), Expect = 1e-04
Identities = 60/242 (24%), Positives = 85/242 (35%), Gaps = 32/242 (13%)
Query: 210 YDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGS----DRFGRDLN 265
Y A GY+ G G GGG GG YG Y G + S G+
Sbjct: 681 YGGNSATAGYSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQP 740
Query: 266 YCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG 325
+ G YG G +QS G PY N+ P + G
Sbjct: 741 H--GGQQKPSYGSG---YQSHQGQQQSYNQSPYS-------NYGPPQGKQK--------G 780
Query: 326 RVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG-AYDHSYVELFLNST 384
G+ ++ ++ N + ++ + + G SGG +Y S
Sbjct: 781 YNHGQGSYSYSNSYNSPGGGGGSDYNYESKF---NYSGSGGRSGGNSYGSGGASYNPGSH 837
Query: 385 AGASGGA-YGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSD 443
G GG+ GS G G +QS+Y P S Q G Y QSS GY + ++S +
Sbjct: 838 GGYGGGSGGGSSYQGKQGGYSQSNYNSPGSGQNYSGPPSSY--QSSQGGYGR-NADHSMN 894
Query: 444 YQ 445
YQ
Sbjct: 895 YQ 896
Score = 29.6 bits (65), Expect = 5.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 386 GASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGG-GYGGQSSMSGYDQ 435
G G G G G +N Y GYG GYGG S+ +GY Q
Sbjct: 647 GRGGSIRGRGRGRGFGGANHGGY-----MNAGAGYGSYGYGGNSATAGYSQ 692
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 58.2 bits (139), Expect = 2e-08
Identities = 68/238 (28%), Positives = 88/238 (36%), Gaps = 35/238 (14%)
Query: 207 PGPYDRPGAGRG--YNSIGRGAGFERMRRGAY---GGGYGGYDDYGGYNDGYGFGSDRFG 261
P P + G GRG GRG GF G Y G GYG Y GYG S G
Sbjct: 634 PPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSY--------GYGGNSATAG 685
Query: 262 RDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEI 321
Y G S + G GG ++G+ + +G D YN SP+ P +
Sbjct: 686 YSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQG--------DNYN--SPVPPKHAGKKQ 735
Query: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFL 381
G+ + +H+ + + + G +Y +SY
Sbjct: 736 PHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHGQGSYSYSNSY----- 790
Query: 382 NSTAGASGGAYGSQ----MMGGMGLSNQSSYG-GPASQQ--LSGGYGGGYGGQSSMSG 432
NS G G Y + G G S +SYG G AS GGYGGG GG SS G
Sbjct: 791 NSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 848
Score = 45.4 bits (106), Expect = 1e-04
Identities = 60/242 (24%), Positives = 85/242 (35%), Gaps = 32/242 (13%)
Query: 210 YDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGS----DRFGRDLN 265
Y A GY+ G G GGG GG YG Y G + S G+
Sbjct: 677 YGGNSATAGYSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQP 736
Query: 266 YCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG 325
+ G YG G +QS G PY N+ P + G
Sbjct: 737 H--GGQQKPSYGSG---YQSHQGQQQSYNQSPYS-------NYGPPQGKQK--------G 776
Query: 326 RVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG-AYDHSYVELFLNST 384
G+ ++ ++ N + ++ + + G SGG +Y S
Sbjct: 777 YNHGQGSYSYSNSYNSPGGGGGSDYNYESKF---NYSGSGGRSGGNSYGSGGASYNPGSH 833
Query: 385 AGASGGA-YGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSD 443
G GG+ GS G G +QS+Y P S Q G Y QSS GY + ++S +
Sbjct: 834 GGYGGGSGGGSSYQGKQGGYSQSNYNSPGSGQNYSGPPSSY--QSSQGGYGR-NADHSMN 890
Query: 444 YQ 445
YQ
Sbjct: 891 YQ 892
Score = 29.6 bits (65), Expect = 5.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 386 GASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGG-GYGGQSSMSGYDQ 435
G G G G G +N Y GYG GYGG S+ +GY Q
Sbjct: 643 GRGGSIRGRGRGRGFGGANHGGY-----MNAGAGYGSYGYGGNSATAGYSQ 688
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 58.2 bits (139), Expect = 2e-08
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 117 GLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA--LKKHKE 174
GL ++ ++++ FS V + G+ G FV F + + A+KA +K H
Sbjct: 104 GLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPI 163
Query: 175 RIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRG 234
+ GHR +E+ K+ P + + G GRG GRG G R + G
Sbjct: 164 Q-GHR-VEVKKAV---------PKEDIYSGGGGGGSRSSRGGRG----GRGRGGGRDQNG 208
Query: 235 AYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGH 289
GG GGY+ YGGY G G G + +G G SD YG+G F S + H
Sbjct: 209 LSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD--YGNGFGGFGSYSQH 261
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 214 GAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGY----------GFGSDRFGRD 263
G G GYN+ G G G YG G+GG+ Y + Y G GS GR
Sbjct: 226 GGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRS 285
Query: 264 LNYCFSGMSDHRYGDGGSSF 283
+ + G G GGSSF
Sbjct: 286 NSGPYRGGYGGGGGYGGSSF 305
Score = 33.5 bits (75), Expect = 0.40
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 391 AYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSG 432
+YG GG G SS+GG ++ SG Y GGYGG G
Sbjct: 264 SYGPMKSGGGGGGGGSSWGGRSN---SGPYRGGYGGGGGYGG 302
Score = 32.0 bits (71), Expect = 1.2
Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 295 GLPYRATENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDA-VAAMAKDKA 350
GL E D+ FS + EI D G+ G V F H+ A AA+ K
Sbjct: 104 GLKGDVAEGDLIEHFSQFGTVE-KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
Query: 351 NMQHRY-VELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYG 409
HR V+ + SGG + +S G G + GG N S G
Sbjct: 163 IQGHRVEVKKAVPKEDIYSGGG----------GGGSRSSRGGRGGRGRGGGRDQNGLSKG 212
Query: 410 GPASQQLSGGYGGGYGG 426
G GGYGGG GG
Sbjct: 213 GGGGYNSYGGYGGGGGG 229
Score = 31.6 bits (70), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 382 NSTAGASGGAYGSQM-MGGMGLSNQSSYGGPASQQLSGG--YGGGYGGQSSMS 431
N + GG Y S GG G ++YGG GG YG G+GG S S
Sbjct: 207 NGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYS 259
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 366 GTSGGAYDHSYVELFLNSTAGASGGA------YGSQMMG-GMGLSNQSSYGGPASQQLSG 418
G GG Y N+ G GG+ YG+ G G +QSSYG S G
Sbjct: 225 GGGGGGY---------NAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGG 275
Query: 419 GYGGGYGGQSSMSGY 433
G G +GG+S+ Y
Sbjct: 276 GGGSSWGGRSNSGPY 290
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 53.1 bits (126), Expect = 5e-07
Identities = 70/282 (24%), Positives = 108/282 (38%), Gaps = 60/282 (21%)
Query: 15 VRGLPWSCSADEVMRFFS------DCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVK 68
+ GL W S ++ + S DC I+ GR G FV + V
Sbjct: 152 IGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV--------TGRSRGFGFVLFKDAASVD 203
Query: 69 LALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIV 128
L+ + + ++ ++ +++ G P G GL S+E+I
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALK--------GKEPPKKVFVG-----GLSPDTSEEQIK 250
Query: 129 QFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
++F + N + LP+D + G F+ + +E +K L+ +IG EI +
Sbjct: 251 EYFGAFGEIEN-IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 188 RAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRG------------- 234
EV R+ Q+ G G G GRG G + +G
Sbjct: 310 PKEVY------RQQQQQQKGGRGAAAGGRGGTRGRGRGQG-QNWNQGFNNYYDQGYGNYN 362
Query: 235 -AYGG-----GYGGYDDYGGYNDG-YGFG---SDRFGRDLNY 266
AYGG GYGGYD Y GYN G YG+G +D G+ Y
Sbjct: 363 SAYGGDQNYSGYGGYD-YTGYNYGNYGYGQGYADYSGQQSTY 403
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 52.8 bits (125), Expect = 6e-07
Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 63/278 (22%)
Query: 15 VRGLPWSCSADEVMRFFS------DCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVK 68
V GL W S ++ +F+ DC I+ + GR G F+ + V+
Sbjct: 74 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN--------TGRSRGFGFILFKDAASVE 125
Query: 69 LALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIV 128
L + + R ++ K+ +++ D V K + + GL ++E+I
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPVKK--------------IFVGGLNPEATEEKIR 171
Query: 129 QFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
++F + + LP+D + + G F+ F +E +K L+K + S
Sbjct: 172 EYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS--------GS 222
Query: 188 RAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAG----FERMRRG--------- 234
+ E++ P+++ Q+ G R RG G G G + +G
Sbjct: 223 KCEIKVAQ--PKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGY 280
Query: 235 ----AYGGGYGGYD----DYGGYNDGYGF--GSDRFGR 262
YG GYGGYD Y GY GY + GS +G+
Sbjct: 281 GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGK 318
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,836,199
Number of Sequences: 37866
Number of extensions: 956480
Number of successful extensions: 6179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 3412
Number of HSP's gapped (non-prelim): 1615
length of query: 449
length of database: 18,247,518
effective HSP length: 106
effective length of query: 343
effective length of database: 14,233,722
effective search space: 4882166646
effective search space used: 4882166646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.