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Search of human proteins with 72004269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 874 0.0
gi|160707881 formin 2 [Homo sapiens] 137 2e-32
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 114 2e-25
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 109 4e-24
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 107 3e-23
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 107 3e-23
gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo ... 105 6e-23
gi|150170670 piccolo isoform 2 [Homo sapiens] 103 4e-22
gi|150378539 piccolo isoform 1 [Homo sapiens] 103 4e-22
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 101 1e-21
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 100 4e-21
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 100 4e-21
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 100 4e-21
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 98 2e-20
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 97 2e-20
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 97 2e-20
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 96 5e-20
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 96 5e-20
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 96 5e-20
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 96 8e-20
gi|7706501 WW domain binding protein 11 [Homo sapiens] 96 8e-20
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 95 1e-19
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 95 1e-19
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 95 1e-19
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 95 1e-19
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 874 bits (2257), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS 60
MLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS
Sbjct: 1 MLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS 60
Query: 61 GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP 120
GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP
Sbjct: 61 GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP 120
Query: 121 IPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP 180
IPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP
Sbjct: 121 IPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP 180
Query: 181 GPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP 240
GPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP
Sbjct: 181 GPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP 240
Query: 241 GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP 300
GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP
Sbjct: 241 GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP 300
Query: 301 GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPL 360
GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPL
Sbjct: 301 GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPL 360
Query: 361 DPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQEEGGSVNENHSGPRLLLDL 411
DPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQEEGGSVNENHSGPRLLLDL
Sbjct: 361 DPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQEEGGSVNENHSGPRLLLDL 411
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 137 bits (344), Expect = 2e-32
Identities = 129/327 (39%), Positives = 157/327 (48%), Gaps = 53/327 (16%)
Query: 79 GPGCRAQKGIPAALSPGPGPIP-APIPGPAQIPG---PLPGSIPGP-IPGPAQIPS---P 130
G G +P A P P P+P A IP P +PG PLP +PG IP P +P P
Sbjct: 928 GAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIP 987
Query: 131 IPAPIPGP-ISGPVQIPG---PFRGPIPGP-ISGPAPIPG---PISGPFSG---PNPGPI 179
P P+PG I P +PG P P+PG I P P+PG P P G P P P+
Sbjct: 988 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL 1047
Query: 180 PG---PNPGPIPG---PISGPIPGPISVPIPGPIPG---PISGPISG---PNPGPIPG-- 225
PG P P P+PG P P+PG +P P P+PG P P+ G P P P+PG
Sbjct: 1048 PGAGIPPPPPLPGAGIPPPPPLPGA-GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVG 1106
Query: 226 -PIPGPISG---PNPGPIPG---PISGPNPGL-IPGPIPGPISG---PGPIIGP-IPSPA 273
P P P+ G P P P+PG P P PG IP P P P G P P+ G IP P
Sbjct: 1107 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPP 1166
Query: 274 QIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSG-SVPAPIPGPGSLPAPAP 332
+PG G + P P+ G + P LPG+ I P PG+G P P+PG G PAPAP
Sbjct: 1167 PLPGAG-IPPPPPLPGVG-IPPPPPLPGVG-IPPPPPLPGAGIPPPPPLPGMGIPPAPAP 1223
Query: 333 LWPQSPDASDFLPDTQLFPHFTELLLP 359
P P + +P L P LLP
Sbjct: 1224 --PLPPPGTG-IPPPPLLPVSGPPLLP 1247
Score = 132 bits (333), Expect = 4e-31
Identities = 130/347 (37%), Positives = 154/347 (44%), Gaps = 59/347 (17%)
Query: 33 VPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAAL 92
+P G G P +P A+ P P +P P G G +P A
Sbjct: 934 LPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPL--------PGAGIPPPPPLPGAG 985
Query: 93 SPGPGPIP-APIPGPAQIPG-------PLPGS-IPGPIPGP-AQIPSPIPAPIPGPISGP 142
P P P+P A IP P +PG PLPG+ IP P P P A IP P P P G I P
Sbjct: 986 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG-IPPP 1044
Query: 143 VQIPG---PFRGPIPGP-ISGPAPIPG---PISGPFSG---PNPGPIPG---PNPGPIPG 189
+PG P P+PG I P P+PG P P G P P P+PG P P P+PG
Sbjct: 1045 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1104
Query: 190 ---PISGPIPGPISVPIPGPIPG---PISGPISG---PNPGPIPG---PIPGPISG---P 234
P P+PG +P P P+PG P P+ G P P P+P P P P+ G P
Sbjct: 1105 VGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIP 1163
Query: 235 NPGPIPG---PISGPNPGL-IPGPIPGP---ISGPGPIIGP-IPSPAQIPGPGRLQGPGP 286
P P+PG P P PG+ IP P P P I P P+ G IP P +PG G P P
Sbjct: 1164 PPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPAP 1223
Query: 287 ILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGP-GSLPAPAP 332
L P P P L P+ GP P GS P P G LP P P
Sbjct: 1224 PLPPPGTGIPP--PPLLPVSGPPLLPQVGSSTLPTPQVCGFLPPPLP 1268
Score = 119 bits (298), Expect = 5e-27
Identities = 115/318 (36%), Positives = 150/318 (47%), Gaps = 59/318 (18%)
Query: 45 PLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAP-- 102
P +P +S+ G G++P P + PG +P+ P P P+
Sbjct: 859 PPLPCTESSSSMPG-LGMVPPPPPPL---------PGMTVPT-LPSTAIPQPPPLQGTEM 907
Query: 103 IPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPGP-ISGPVQIPGPFRGPIPGPIS 158
+P P P PLPG+ P P+PG +P P P+PG I P +PG P P P+
Sbjct: 908 LPPP---PPPLPGAGIPPPPPLPGAGILPLP---PLPGAGIPPPPPLPGAAIPP-PPPLP 960
Query: 159 GPA-PIPGPISGPFSGPNPGPIPG---PNPGPIPG---PISGPIPGPISVPIPGPIPG-- 209
G P+P P+ G P P P+PG P P P+PG P P+PG +P P P+PG
Sbjct: 961 GAGIPLPPPLPGA-GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAG 1018
Query: 210 -PISGPISG---PNPGPIPG---PIPGPISG---PNPGPIPGPISGPNPGLIPG---PIP 256
P P+ G P P P+PG P P P+ G P P P+PG P P L PG P P
Sbjct: 1019 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL-PGAGIPPP 1077
Query: 257 GPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSG- 315
P+ G G IP P +PG G + P P+ G + P LPG A I P PG+G
Sbjct: 1078 PPLPGAG-----IPPPPPLPGAG-IPPPPPLPGVG-IPPPPPLPG-AGIPPPPPLPGAGI 1129
Query: 316 SVPAPIPGPGSLPAPAPL 333
P P+PG G +P P PL
Sbjct: 1130 PPPPPLPGAG-IPPPPPL 1146
Score = 106 bits (264), Expect = 4e-23
Identities = 105/311 (33%), Positives = 131/311 (42%), Gaps = 58/311 (18%)
Query: 34 PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALS 93
P G G P +P A P P +P P G G +P A
Sbjct: 1012 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL--------PGAGIPPPPPLPGAGI 1063
Query: 94 PGPGPIP-APIPGPAQIPG-------PLPGS-IPGPIPGPAQIPSPIPAPIPGP-ISGPV 143
P P P+P A IP P +PG PLPG+ IP P P P + P P P+PG I P
Sbjct: 1064 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-VGIPPPPPLPGAGIPPPP 1122
Query: 144 QIPGPFRGPIPGPISGPAPIPGPISGPFSG-PNPGPIPG---PNPGPIPG---PISGPIP 196
+PG P P P+ G A IP P P G P P P+PG P P P+PG P P+P
Sbjct: 1123 PLPGAGIPP-PPPLPG-AGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1180
Query: 197 GPISVPIPGPIPGPISGPISGPNPGPIPG---PIPGPISGPNPGPIPGPISGPNPGLIPG 253
G + +P P P+PG + P P P+PG P P P+ G P P P
Sbjct: 1181 G-VGIPPPPPLPG-----VGIPPPPPLPGAGIPPPPPLPGMGIPPAPAP----------- 1223
Query: 254 PIPGPISG-PGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAP--ILGPGS 310
P+P P +G P P + P+ P +P G P P + G LP P + G G
Sbjct: 1224 PLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTPQVC-------GFLPPPLPSGLFGLGM 1276
Query: 311 GPGSGSVPAPI 321
GS PI
Sbjct: 1277 NQDKGSRKQPI 1287
Score = 38.5 bits (88), Expect = 0.011
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 234 PNPGPIP---GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSP 290
P+P P+P S P G++P P P P+ PG + +PS A IP P LQG + P
Sbjct: 856 PSPPPLPCTESSSSMPGLGMVPPP-PPPL--PGMTVPTLPSTA-IPQPPPLQGTEMLPPP 911
Query: 291 GRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWP 335
P LPG +P P P PG+ P P P
Sbjct: 912 -----PPPLPG-------------AGIPPPPPLPGAGILPLPPLP 938
Score = 37.7 bits (86), Expect = 0.019
Identities = 63/240 (26%), Positives = 77/240 (32%), Gaps = 18/240 (7%)
Query: 89 PAALSPGPGP---IPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQI 145
P A+SP PG + + GP+ G PGS P + + S +P + P Q
Sbjct: 236 PTAVSPQPGAFLGLDRFLLGPSGGAGEAPGS-PDTEQALSAL-SDLPESLAAEPREPQQP 293
Query: 146 PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPG 205
P P P+ S PA P P S P P GP P+ G
Sbjct: 294 PSPGGLPVSEAPSLPAAQPAAKDSPSSTAFPFPEAGPGEEAAGAPVRGAGDTDEEGEEDA 353
Query: 206 PIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG-PIPGP-ISGPG 263
P P G P G G P P +PG P P P
Sbjct: 354 FEDAPRGSP--GEEWAPEVGEDAPQRLGEEPEEEAQGPDAPAAASLPGSPAPSQRCFKPY 411
Query: 264 PIIGPI---PSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P+I P + Q+ P P SP R P P L GS SV AP
Sbjct: 412 PLITPCYIKTTTRQLSSPNHSPSQSPNQSPRIKRRP------EPSLSRGSRTALASVAAP 465
Score = 30.8 bits (68), Expect = 2.3
Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 274 QIPGPGRLQGPGPILSPGRMRSPGSLPGL-----APILGPGSGPGSGSVPAPIPGPGSLP 328
Q+ G P +SP PG+ GL P G G PGS + LP
Sbjct: 225 QLQGAEEPAAPPTAVSP----QPGAFLGLDRFLLGPSGGAGEAPGSPDTEQALSALSDLP 280
Query: 329 ---APAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQE---GDDSM 382
A P PQ P + LP ++ L P S S+ + E G+++
Sbjct: 281 ESLAAEPREPQQPPSPGGLPVSE-----APSLPAAQPAAKDSPSSTAFPFPEAGPGEEAA 335
Query: 383 GKKHSGSQPQEEGGSVNENHSGPR 406
G G+ +E G + PR
Sbjct: 336 GAPVRGAGDTDEEGEEDAFEDAPR 359
Score = 30.4 bits (67), Expect = 3.0
Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 11/162 (6%)
Query: 28 QQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAE--PTICSLHQAWGGPGCRAQ 85
++PQ+ P G AP +PAA +A S P E P + G G +
Sbjct: 288 REPQQPPSPGGLPVSEAPSLPAAQPAAKDSPSSTAFPFPEAGPGEEAAGAPVRGAGDTDE 347
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIP-SPIPAPIPGPISGPVQ 144
+G A P P P ++ P + AQ P +P A +PG P
Sbjct: 348 EGEEDAFEDAPRGSPGEEWAP-EVGEDAPQRLGEEPEEEAQGPDAPAAASLPG---SPAP 403
Query: 145 IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGP 186
F+ P P+ P I + S PN P PN P
Sbjct: 404 SQRCFK---PYPLITPCYIK-TTTRQLSSPNHSPSQSPNQSP 441
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 114 bits (285), Expect = 2e-25
Identities = 78/248 (31%), Positives = 105/248 (42%), Gaps = 16/248 (6%)
Query: 112 PLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPI----PGPISGPAPIPGPI 167
P+ G++P + +P+PI P PG S P +P F+ P+ P P SG P+
Sbjct: 184 PVEGTLPLVTTNFSPLPAPICPPAPGSASVPHSVPDAFQVPLSVPAPVPHSGLVPVQVAT 243
Query: 168 SGPFSGPNPGPIPGPNPGPIPGPI----SGPIPGPISVPIPGPIPGPISGPISGPNPGPI 223
S P P P+P P P P S P+ SV +P P P SGP+ P P
Sbjct: 244 SVPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPV--PLSAPA 301
Query: 224 PGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQG 283
P P+ P+S P I P+ P L+ P+P P+ P P +P P P +
Sbjct: 302 PAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAP----MPASTPPAAPAPPSVPM 357
Query: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF 343
P P S G +P +P AP P P PAP P P + PA P +P + F
Sbjct: 358 PTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIP--TSAPIPASF 415
Query: 344 LPDTQLFP 351
FP
Sbjct: 416 SLSRVCFP 423
Score = 112 bits (281), Expect = 5e-25
Identities = 67/191 (35%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 96 PGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP----------ISGPVQI 145
P +PAP+P +P + S+P P P A +P+ PAP P +S V +
Sbjct: 224 PLSVPAPVPHSGLVPVQVATSVPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLV 283
Query: 146 PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPG 205
P P P GP+ AP P P+S P S P I P P P + P+P P+ P+P
Sbjct: 284 PVPASAPPSGPVPLSAPAPAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPA 343
Query: 206 PIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPI 265
S P + P P +P P P P SGP P P P P +P P P PI P P
Sbjct: 344 ------STPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTP--VPAPTPAPIFTPAPT 395
Query: 266 IGPIPSPAQIP 276
P +PA IP
Sbjct: 396 PMPAATPAAIP 406
Score = 102 bits (254), Expect = 6e-22
Identities = 125/414 (30%), Positives = 153/414 (36%), Gaps = 105/414 (25%)
Query: 44 APLVPAA--SASAPQRGPSGI-----LPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGP 96
AP+ P A SAS P P +PA P H G + +PA SP
Sbjct: 201 APICPPAPGSASVPHSVPDAFQVPLSVPAPVP-----HS--GLVPVQVATSVPAP-SPPL 252
Query: 97 GPIPAPIPGPAQIP------GPLPGS----IPGPIPGPAQIPSPIPAPIPGPISGPVQIP 146
P+PA P P +P PL S +P P P P P+ AP P P+S PV P
Sbjct: 253 APVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAPAPLSVPVSAP 312
Query: 147 GPFRGPIPGPISGP----APIPGPISGPF--SGPNPGPIPGPNPGPIPGPISGPIPGPIS 200
P P S P AP+P P+ P S P P P P P P P SGP P
Sbjct: 313 PLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTL 372
Query: 201 VP--IPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPIS--------GPNPGL 250
+P P P+P P PI P P P+P P I P PIP S P +
Sbjct: 373 IPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAI--PTSAPIPASFSLSRVCFPAAQAPAM 430
Query: 251 IPGPI---PGPISGPGPIIGPIPSP--------AQIPG-------------PGRLQG--- 283
P+ PG + P + IP P A +P P LQ
Sbjct: 431 QKVPLSFQPGTVLTPSQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCL 490
Query: 284 PGPILSPGRMRSPGSLPGLAPILG------------PGSGPGSGSV---PAP--IPGPGS 326
PG + SP P + P+ P + P SGS PAP +PGP +
Sbjct: 491 PGVLASPELRSYPYAFSVARPLTSDSKLVSLEVNRLPCTSP-SGSTTTQPAPDGVPGPLA 549
Query: 327 -----------LPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPLEGSSVS 369
LP P PL P +P S P P TE EG+SV+
Sbjct: 550 DTSLVTASAKVLPTPQPLLP-APSGSSAPPHPAKMPSGTE-----QQTEGTSVT 597
Score = 64.7 bits (156), Expect = 1e-10
Identities = 64/225 (28%), Positives = 81/225 (36%), Gaps = 67/225 (29%)
Query: 201 VPIPGPIP------GPISGPISGPNPG--------------PIPGPIPGPISG------- 233
VP+ G +P P+ PI P PG P+ P P P SG
Sbjct: 183 VPVEGTLPLVTTNFSPLPAPICPPAPGSASVPHSVPDAFQVPLSVPAPVPHSGLVPVQVA 242
Query: 234 -----------------PNPGPIPGPISGPNP------GLIPGPIPGPISGPGPIIGPIP 270
P P +P IS NP L+P P P SGP P+ P P
Sbjct: 243 TSVPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAP 302
Query: 271 SPAQIPGP----GRLQGPGPILSPGRMRSPGSLPGLAPILG--PGSGPGSGSVPAPIPGP 324
+P +P +Q P P +P + +P P LAP+ P + P SVP P P P
Sbjct: 303 APLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMPTPTP 362
Query: 325 GSLP----------APAPLWPQSPDASDFLPDTQLFPHFTELLLP 359
S P AP P+ P A F P P T +P
Sbjct: 363 SSGPPSTPTLIPAFAPTPV-PAPTPAPIFTPAPTPMPAATPAAIP 406
Score = 58.9 bits (141), Expect = 8e-09
Identities = 81/333 (24%), Positives = 111/333 (33%), Gaps = 104/333 (31%)
Query: 43 AAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRA-QKGIPAA-----LSPGP 96
A+ LVP ASAP PSG +P + P L P Q +P + L+P P
Sbjct: 279 ASVLVPVP-ASAP---PSGPVPLSAPAPAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVP 334
Query: 97 GPIPAPIPGPAQIPGPLPGSIPGPIPGPAQ------------IPSPIPAPIPGPISGPVQ 144
P+ AP+P P P S+P P P P+ P+P+PAP P PI P
Sbjct: 335 TPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAP 394
Query: 145 IPGPFR--------GPIPGPIS----------GPAPIPGPIS-GPFSGPNPGP----IPG 181
P P PIP S PA P+S P + P IP
Sbjct: 395 TPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQPLVYIPP 454
Query: 182 PNPGP------------------------------IPGPISGPI--PGPISVPIPGPIPG 209
P+ G +PG ++ P P + + P+
Sbjct: 455 PSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFSVARPLTS 514
Query: 210 ------------PISGPISGPNPGPIPGPIPGPISG-----------PNPGPIPGPISG- 245
P + P P P +PGP++ P P P+ SG
Sbjct: 515 DSKLVSLEVNRLPCTSPSGSTTTQPAPDGVPGPLADTSLVTASAKVLPTPQPLLPAPSGS 574
Query: 246 ---PNPGLIPGPIPGPISGPGPIIGPIPSPAQI 275
P+P +P G P+ SP Q+
Sbjct: 575 SAPPHPAKMPSGTEQQTEGTSVTFSPLKSPPQL 607
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 109 bits (273), Expect = 4e-24
Identities = 117/405 (28%), Positives = 152/405 (37%), Gaps = 88/405 (21%)
Query: 21 ARERRLQQQPQRVPGQRGRGARAAPLVP------AASASAPQRGPSGILP--AAEPTICS 72
AR++ L ++ ++ P R + PL+P A A P + P A P +
Sbjct: 703 ARQQLLDRELKKKPPPRPTAPK--PLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPD 760
Query: 73 LHQAWGGPGCRAQKGIPAALSPGPGPIPAPIP-----GPAQIPGP-LPGSIPGPI-PGPA 125
P P++ PGP + P+P GP Q+ P PG P+ PGPA
Sbjct: 761 TFLGSATPLHFPPSPFPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPA 820
Query: 126 QIPSPIPAPIPG------PISGPVQIPGPFRGPIPGPISG-PAPIPGPISGP-------- 170
P+P P G P G V P GP P P++G P+ P SGP
Sbjct: 821 LYPAPAYTPELGLVPRSSPQHGVVSSPYVGVGPAP-PVAGLPSAPPPQFSGPELAMAVRP 879
Query: 171 --------------FSGPNPGPIPGPNPGPIPGPISGPIPGPISV------PIPGP---- 206
+ P P P P P P P P P+P P + PIP
Sbjct: 880 ATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFS 939
Query: 207 --IPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPN------PGLIPGPIPGP 258
IP P GP P P P P P GP P P P+ P+ PGL+P P P
Sbjct: 940 SGIPAGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYP 999
Query: 259 ISG-----------------PGPIIGPIPSPA---QIPGPGRLQGPGPILSPGRMRSPGS 298
+ PGP P+P+ + P PG Q P P L+ G S
Sbjct: 1000 YAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRP 1059
Query: 299 L-PGLAP--ILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDA 340
+ P AP I GP S S P +P P P P P+ P+ P A
Sbjct: 1060 MGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAA 1104
Score = 107 bits (267), Expect = 2e-23
Identities = 106/343 (30%), Positives = 137/343 (39%), Gaps = 38/343 (11%)
Query: 30 PQRVPGQRGRGARAAPLVPA-ASASAPQRGPS-GILPAAEPTICSLHQAWGGPG-CRAQK 86
P ++ R G A P+ P A AP P G++P + P + + G G
Sbjct: 799 PTQLIQPRAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVGPAPPVA 858
Query: 87 GIPAALSPG-PGPIPAPIPGPA-----QIPGPLPG-SIPGPIPGPAQIPSPIPAPIPGPI 139
G+P+A P GP A PA I P+P + P P P PA P P P P P+
Sbjct: 859 GLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPL 918
Query: 140 SGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPI 199
P P + PIP + IP F P GP P P+P P P GP P
Sbjct: 919 PTPYTYPAGAKQPIPAQHHFSSGIPAG----FPAPRIGPQPQPHPQPHPSQAFGPQPPQQ 974
Query: 200 SVPIPGPIPGPISGPISGPNPGPIP-GPIPGPISGPNPGPI-----PGPISGPNP---GL 250
+P+ P P P P P P P PG + P P P+ PGP P P G
Sbjct: 975 PLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPP-PLHTQLYPGPAQDPLPAHSGA 1033
Query: 251 IPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPI--LGP 308
+P P PGP P P + P+P+ P GP +P +R P S P L P
Sbjct: 1034 LPFPSPGPPQPPHPPLAYGPAPSTRP-------MGPQAAPLTIRGPSSAGQSTPSPHLVP 1086
Query: 309 GSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFL---PDTQ 348
P G P P+P P P + A+D L P++Q
Sbjct: 1087 SPAPSPG--PGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQ 1127
Score = 103 bits (257), Expect = 3e-22
Identities = 100/307 (32%), Positives = 121/307 (39%), Gaps = 58/307 (18%)
Query: 43 AAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAP 102
A P+ SA PQ + A P ++ Q IP+ +P P P PAP
Sbjct: 854 APPVAGLPSAPPPQFSGPELAMAVRPATTTVDSI--------QAPIPSHTAPRPNPTPAP 905
Query: 103 ------IPGPAQIPGPL--PGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIP 154
+P P +P P P PIP S IPA P P GP P P P P
Sbjct: 906 PPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQ--PQPHPQPHP 963
Query: 155 GPISGPAPI--PGPISGP--FSGPNPGPIPGPNP---GPIPGPISGP--------IPGPI 199
GP P P P+ P F PG +P +P P PG + P PGP
Sbjct: 964 SQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPA 1023
Query: 200 SVPIP---GPIPGPISGPISGPNP----GPIPGPIP-GPISGPNP--GPIPGPISGPNPG 249
P+P G +P P GP P+P GP P P GP + P GP S P+P
Sbjct: 1024 QDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPH 1083
Query: 250 LIPGPIPGPISGPGPIIGPIPSPAQIPGP--------GRLQGPGPILSPGRMRSPGSLPG 301
L+P P P P GPGP+ P PA P P L P G +SPG G
Sbjct: 1084 LVPSPAPSP--GPGPV--PPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPG---G 1136
Query: 302 LAPILGP 308
P+L P
Sbjct: 1137 GQPLLQP 1143
Score = 43.1 bits (100), Expect = 5e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 96 PGPIPAPI---PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGP 152
PG + +P+ PGPA+ PG P S+P P P+ P P+ +P+P + P P P
Sbjct: 1510 PGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAP 1568
Query: 153 IPGPIS 158
GP S
Sbjct: 1569 SSGPPS 1574
Score = 38.9 bits (89), Expect = 0.009
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 184 PGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP-GP 242
PG + P++ +PGP P P P S PI +P P+ P+P P+P P
Sbjct: 1510 PGGLESPVAS-LPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAP 1568
Query: 243 ISGP 246
SGP
Sbjct: 1569 SSGP 1572
Score = 38.1 bits (87), Expect = 0.015
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 188 PGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPN 247
PG + P+ +PGP P P S P PIP P P+S P P P
Sbjct: 1510 PGGLESPVAS-----LPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLP-------EAPQ 1557
Query: 248 PGLIPGPIP-GPISGP 262
P P P+P P SGP
Sbjct: 1558 PKEEP-PVPEAPSSGP 1572
Score = 37.7 bits (86), Expect = 0.019
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 45 PLVPAASASAPQRG-----PSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPI 99
P P ASAS Q+ ++ + I S+ R G+ + ++ PGP
Sbjct: 1465 PCKPLASASISQKNHLPQDSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASLPGPA 1524
Query: 100 PAPIPGPAQIPG--PLPGSIPGPIPGP-AQIPSP-IPAPIP-GPISGP 142
P PA +P P+P S P P+ P + P P P+P P SGP
Sbjct: 1525 EPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGP 1572
Score = 37.7 bits (86), Expect = 0.019
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 154 PGPISGP-APIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP-GPI 211
PG + P A +PGP P P P P P P P+S P+P P+P P
Sbjct: 1510 PGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPS 1569
Query: 212 SGPIS 216
SGP S
Sbjct: 1570 SGPPS 1574
Score = 37.0 bits (84), Expect = 0.033
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 287 ILSPGRMRSP-GSLPGLA--PILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF 343
I PG + SP SLPG A P L P S P S +P+ P P S P P P+
Sbjct: 1507 IRPPGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPE 1566
Query: 344 LPDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQEGDDSMGKKHSG 388
P + ELL L P S S++ + + + + H+G
Sbjct: 1567 APSSGPPSSSLELLASLTPEAFSLDSSLRGKQRMSKHNFLQAHNG 1611
Score = 35.4 bits (80), Expect = 0.095
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 136 PGPISGPV-QIPGPFRGPIPGPISGP--APIPGPISGPFSGPNP-GPIPGPNPGPIP-GP 190
PG + PV +PGP P P S P PIP P S P P P P P P+P P
Sbjct: 1510 PGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEP-PVPEAP 1568
Query: 191 ISGP 194
SGP
Sbjct: 1569 SSGP 1572
Score = 34.7 bits (78), Expect = 0.16
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 164 PGPISGPFSGPNPGPIPGPNPGP-IPGPISGPIPGPISVPIPGPIPGPISGPI-SGPNPG 221
PG + P + +PGP P +P P P S PIP P P+S P+ P P
Sbjct: 1510 PGGLESPVAS-----LPGPAEPPGLP-----PASLPESTPIPSSSPPPLSSPLPEAPQPK 1559
Query: 222 PIPGPIP-GPISGP 234
P P+P P SGP
Sbjct: 1560 EEP-PVPEAPSSGP 1572
Score = 33.9 bits (76), Expect = 0.28
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 124 PAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPN 183
P + SP+ A +PGP P P P P S P P+ P+ P P P
Sbjct: 1510 PGGLESPV-ASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLP---EAPQPKEEPPVP 1565
Query: 184 PGPIPGPISGPI 195
P GP S +
Sbjct: 1566 EAPSSGPPSSSL 1577
Score = 32.7 bits (73), Expect = 0.61
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 224 PGPIPGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGPIIGPIPSPAQ 274
PG + P++ +PGP P P +P P P S P P+ P+P Q
Sbjct: 1510 PGGLESPVAS-----LPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQ 1557
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 107 bits (266), Expect = 3e-23
Identities = 118/336 (35%), Positives = 137/336 (40%), Gaps = 42/336 (12%)
Query: 28 QQPQRVPGQRGRGARAAPL-VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q P PG G P+ VP +GP GI +P + G PG + ++
Sbjct: 283 QGPLGKPGAPGEPGPQGPIGVPGV------QGPPGIPGIGKPGQDGIPGQPGFPGGKGEQ 336
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLP----GSIPGPIPGPAQIPSPIPAPIPGPISGP 142
G+P PGP P G PGP G +PG + GP PI AP G G
Sbjct: 337 GLPGL----PGPPGLPGIGKPGFPGPKGDRGMGGVPGAL-GPRGEKGPIGAPGIGGPPGE 391
Query: 143 VQIPGPFRGPIPGPISGPAPI--PGPIS-GPFSGPNPGPIPGPNPGPIPGPISGPIPGPI 199
+PG IPGP+ P I PGP G GP P P PG P G +
Sbjct: 392 PGLPG-----IPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEV 446
Query: 200 SVPIPGPIPGPISGPISGPNPGPIPG--PIPGPISGPNPGP-IPGPISGPNPGLIPGPIP 256
P +PGPI GP +PG +PG + GP P IPG P IPG
Sbjct: 447 GPPGMRGLPGPI-GPKGEAGQKGVPGLPGVPG-LLGPKGEPGIPGDQGLQGPPGIPG--- 501
Query: 257 GPISGPGPIIGP--IPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPG 313
I GP IGP IP P PG PG PG I PG G PG LGP PG
Sbjct: 502 --IGGPSGPIGPPGIPGPKGEPGLPGPPGFPG-IGKPGVAGLHGP-PGKPGALGPQGQPG 557
Query: 314 SGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
P P PGP PA P P P ++LPD L
Sbjct: 558 LPGPPGP-PGPPGPPAVMP--PTPPPQGEYLPDMGL 590
Score = 98.2 bits (243), Expect = 1e-20
Identities = 113/349 (32%), Positives = 142/349 (40%), Gaps = 50/349 (14%)
Query: 25 RLQQQPQRVPGQRGR-GARAAPL--VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPG 81
R +Q P+ PG RG G P +P +G G+ P + A G PG
Sbjct: 117 RGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPG 176
Query: 82 CRAQKGIPAALSPGPGPIPAPIPGPAQIPG---PLPGSIPGPIPGPAQIPSPIPAPIPGP 138
+ + G + P P P PGP +PG P +PG PGP P P P
Sbjct: 177 AKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQ-PGPKGDRGPKGLPGPQG 235
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
+ GP G PG + GP + GP PGP+ P G PG ++G PGP
Sbjct: 236 LRGPKGDKGFGMPGAPG-VKGPPGMHGP---------PGPVGLPGVGK-PG-VTG-FPGP 282
Query: 199 ISVPIPGPIPGPISGPISGPNPGPIPGPIPGP-ISGPNPGPIPGPISGPNPGLIPGPIPG 257
GP+ P + PGP GPI P + GP PG IPG I P IPG PG
Sbjct: 283 ---------QGPLGKPGAPGEPGP-QGPIGVPGVQGP-PG-IPG-IGKPGQDGIPGQ-PG 328
Query: 258 PISGPGPIIGP-IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP--------GLAPILGP 308
G G P +P P +PG G+ PGP G PG+L G I GP
Sbjct: 329 FPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGP 388
Query: 309 GSGPGSGSVPAPIPGPGSLPAPAP------LWPQSPDASDFLPDTQLFP 351
PG +P P+ PG++ P P + PQ P P Q FP
Sbjct: 389 PGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFP 437
Score = 69.3 bits (168), Expect = 6e-12
Identities = 88/260 (33%), Positives = 106/260 (40%), Gaps = 55/260 (21%)
Query: 118 PGPIPGPAQIPSP---IPAPIPGPISGPVQIPGPFRGPIPGP-------ISGPAPIPGPI 167
P P G +P IP GP PGP RGP PGP I G PGP
Sbjct: 95 PAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGP-RGP-PGPPGLPGHGIPGIKGKPGPQ 152
Query: 168 SGPFSG-PNPGPIPGPNPGPIPGP-ISGPIP-----GPISVPIPGPIPGPISGPISGPNP 220
P G P +PG PG + P G I GP+ +P P PGP P G
Sbjct: 153 GYPGVGKPGMPGMPG-KPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG 211
Query: 221 GP-IPGPIPGPISGPNPGPIPGP--ISGP--NPGLIPGPIPGPISGPGPIIGPIPSPAQI 275
GP +PG PGP P +PGP + GP + G PG + GP + GP P P +
Sbjct: 212 GPGLPGQ-PGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPG-VKGPPGMHGP-PGPVGL 268
Query: 276 PGPGR-----LQGP-GPILSPGRMRSPG-----SLPGLAPILG-PGSG-PGSGSVPAP-- 320
PG G+ GP GP+ PG PG +PG+ G PG G PG +P
Sbjct: 269 PGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPG 328
Query: 321 ------------IPGPGSLP 328
+PGP LP
Sbjct: 329 FPGGKGEQGLPGLPGPPGLP 348
Score = 65.5 bits (158), Expect = 9e-11
Identities = 86/273 (31%), Positives = 102/273 (37%), Gaps = 45/273 (16%)
Query: 104 PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGP-----------VQIPGPFRGP 152
P P QIP +P IP P Q+P +P G G +P +
Sbjct: 35 PLPPQIPPQMPPQIPQYQPLGQQVPH-MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEI 93
Query: 153 IPGPISGPAPIPG-----PIS------GPFSGPNPGPIPGPNPGP---IPGPISGPIPGP 198
P P G +P P++ GP P P PGP P IPG I G PGP
Sbjct: 94 QPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPG-IKGK-PGP 151
Query: 199 ISVPIPGP--IPGPISGPISGPNPGPI----------PGPIPGPISGPNPGPIPGPISGP 246
P G +PG P + PG P IPGP P P +PG
Sbjct: 152 QGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG 211
Query: 247 NPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPIL 306
PGL PG PGP GP +P P + GP +G G +PG PG P+
Sbjct: 212 GPGL-PGQ-PGPKGDRGP--KGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVG 267
Query: 307 GPGSG-PGSGSVPAPIPGPGSLPAPAPLWPQSP 338
PG G PG P P G AP PQ P
Sbjct: 268 LPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP 300
Score = 63.9 bits (154), Expect = 2e-10
Identities = 80/240 (33%), Positives = 97/240 (40%), Gaps = 42/240 (17%)
Query: 34 PGQRGRGARAAPLVPAASASAP-QRGPSGIL-------PAAEPTICSLHQAWGGPGCRAQ 85
PG+ G P+ P + P +G GI+ P EP L G PG +
Sbjct: 389 PGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEP---GLQGFPGKPGFLGE 445
Query: 86 KGIPAALSPGPGPIPAP-------IPGPAQIPGPL-PGSIPGPIPGPAQIPSPIPAPIPG 137
G P + PGPI +PG +PG L P PG IPG + P P G
Sbjct: 446 VG-PPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPG-IPGDQGLQGPPGIPGIG 503
Query: 138 PISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSG-PNPGPIPGP--NPGPIPGPISGP 194
SGP+ PG IPGP G +PGP P G P + GP PG + GP P
Sbjct: 504 GPSGPIGPPG-----IPGP-KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGAL-GPQGQP 556
Query: 195 -IPGPISVPIPGPIPGPISGP-ISGPNPGPIPGPIPG---PISGPNPGPIPGPISGPNPG 249
+PGP PGP PGP P + P P P +P I G P G G N G
Sbjct: 557 GLPGP-----PGP-PGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGG 610
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 107 bits (266), Expect = 3e-23
Identities = 118/336 (35%), Positives = 137/336 (40%), Gaps = 42/336 (12%)
Query: 28 QQPQRVPGQRGRGARAAPL-VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q P PG G P+ VP +GP GI +P + G PG + ++
Sbjct: 283 QGPLGKPGAPGEPGPQGPIGVPGV------QGPPGIPGIGKPGQDGIPGQPGFPGGKGEQ 336
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLP----GSIPGPIPGPAQIPSPIPAPIPGPISGP 142
G+P PGP P G PGP G +PG + GP PI AP G G
Sbjct: 337 GLPGL----PGPPGLPGIGKPGFPGPKGDRGMGGVPGAL-GPRGEKGPIGAPGIGGPPGE 391
Query: 143 VQIPGPFRGPIPGPISGPAPI--PGPIS-GPFSGPNPGPIPGPNPGPIPGPISGPIPGPI 199
+PG IPGP+ P I PGP G GP P P PG P G +
Sbjct: 392 PGLPG-----IPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEV 446
Query: 200 SVPIPGPIPGPISGPISGPNPGPIPG--PIPGPISGPNPGP-IPGPISGPNPGLIPGPIP 256
P +PGPI GP +PG +PG + GP P IPG P IPG
Sbjct: 447 GPPGMRGLPGPI-GPKGEAGQKGVPGLPGVPG-LLGPKGEPGIPGDQGLQGPPGIPG--- 501
Query: 257 GPISGPGPIIGP--IPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPG 313
I GP IGP IP P PG PG PG I PG G PG LGP PG
Sbjct: 502 --IGGPSGPIGPPGIPGPKGEPGLPGPPGFPG-IGKPGVAGLHGP-PGKPGALGPQGQPG 557
Query: 314 SGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
P P PGP PA P P P ++LPD L
Sbjct: 558 LPGPPGP-PGPPGPPAVMP--PTPPPQGEYLPDMGL 590
Score = 98.2 bits (243), Expect = 1e-20
Identities = 113/349 (32%), Positives = 142/349 (40%), Gaps = 50/349 (14%)
Query: 25 RLQQQPQRVPGQRGR-GARAAPL--VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPG 81
R +Q P+ PG RG G P +P +G G+ P + A G PG
Sbjct: 117 RGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPG 176
Query: 82 CRAQKGIPAALSPGPGPIPAPIPGPAQIPG---PLPGSIPGPIPGPAQIPSPIPAPIPGP 138
+ + G + P P P PGP +PG P +PG PGP P P P
Sbjct: 177 AKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQ-PGPKGDRGPKGLPGPQG 235
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
+ GP G PG + GP + GP PGP+ P G PG ++G PGP
Sbjct: 236 LRGPKGDKGFGMPGAPG-VKGPPGMHGP---------PGPVGLPGVGK-PG-VTG-FPGP 282
Query: 199 ISVPIPGPIPGPISGPISGPNPGPIPGPIPGP-ISGPNPGPIPGPISGPNPGLIPGPIPG 257
GP+ P + PGP GPI P + GP PG IPG I P IPG PG
Sbjct: 283 ---------QGPLGKPGAPGEPGP-QGPIGVPGVQGP-PG-IPG-IGKPGQDGIPGQ-PG 328
Query: 258 PISGPGPIIGP-IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP--------GLAPILGP 308
G G P +P P +PG G+ PGP G PG+L G I GP
Sbjct: 329 FPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGP 388
Query: 309 GSGPGSGSVPAPIPGPGSLPAPAP------LWPQSPDASDFLPDTQLFP 351
PG +P P+ PG++ P P + PQ P P Q FP
Sbjct: 389 PGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFP 437
Score = 69.3 bits (168), Expect = 6e-12
Identities = 88/260 (33%), Positives = 106/260 (40%), Gaps = 55/260 (21%)
Query: 118 PGPIPGPAQIPSP---IPAPIPGPISGPVQIPGPFRGPIPGP-------ISGPAPIPGPI 167
P P G +P IP GP PGP RGP PGP I G PGP
Sbjct: 95 PAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGP-RGP-PGPPGLPGHGIPGIKGKPGPQ 152
Query: 168 SGPFSG-PNPGPIPGPNPGPIPGP-ISGPIP-----GPISVPIPGPIPGPISGPISGPNP 220
P G P +PG PG + P G I GP+ +P P PGP P G
Sbjct: 153 GYPGVGKPGMPGMPG-KPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG 211
Query: 221 GP-IPGPIPGPISGPNPGPIPGP--ISGP--NPGLIPGPIPGPISGPGPIIGPIPSPAQI 275
GP +PG PGP P +PGP + GP + G PG + GP + GP P P +
Sbjct: 212 GPGLPGQ-PGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPG-VKGPPGMHGP-PGPVGL 268
Query: 276 PGPGR-----LQGP-GPILSPGRMRSPG-----SLPGLAPILG-PGSG-PGSGSVPAP-- 320
PG G+ GP GP+ PG PG +PG+ G PG G PG +P
Sbjct: 269 PGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPG 328
Query: 321 ------------IPGPGSLP 328
+PGP LP
Sbjct: 329 FPGGKGEQGLPGLPGPPGLP 348
Score = 65.5 bits (158), Expect = 9e-11
Identities = 86/273 (31%), Positives = 102/273 (37%), Gaps = 45/273 (16%)
Query: 104 PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGP-----------VQIPGPFRGP 152
P P QIP +P IP P Q+P +P G G +P +
Sbjct: 35 PLPPQIPPQMPPQIPQYQPLGQQVPH-MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEI 93
Query: 153 IPGPISGPAPIPG-----PIS------GPFSGPNPGPIPGPNPGP---IPGPISGPIPGP 198
P P G +P P++ GP P P PGP P IPG I G PGP
Sbjct: 94 QPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPG-IKGK-PGP 151
Query: 199 ISVPIPGP--IPGPISGPISGPNPGPI----------PGPIPGPISGPNPGPIPGPISGP 246
P G +PG P + PG P IPGP P P +PG
Sbjct: 152 QGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG 211
Query: 247 NPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPIL 306
PGL PG PGP GP +P P + GP +G G +PG PG P+
Sbjct: 212 GPGL-PGQ-PGPKGDRGP--KGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVG 267
Query: 307 GPGSG-PGSGSVPAPIPGPGSLPAPAPLWPQSP 338
PG G PG P P G AP PQ P
Sbjct: 268 LPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP 300
Score = 63.9 bits (154), Expect = 2e-10
Identities = 80/240 (33%), Positives = 97/240 (40%), Gaps = 42/240 (17%)
Query: 34 PGQRGRGARAAPLVPAASASAP-QRGPSGIL-------PAAEPTICSLHQAWGGPGCRAQ 85
PG+ G P+ P + P +G GI+ P EP L G PG +
Sbjct: 389 PGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEP---GLQGFPGKPGFLGE 445
Query: 86 KGIPAALSPGPGPIPAP-------IPGPAQIPGPL-PGSIPGPIPGPAQIPSPIPAPIPG 137
G P + PGPI +PG +PG L P PG IPG + P P G
Sbjct: 446 VG-PPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPG-IPGDQGLQGPPGIPGIG 503
Query: 138 PISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSG-PNPGPIPGP--NPGPIPGPISGP 194
SGP+ PG IPGP G +PGP P G P + GP PG + GP P
Sbjct: 504 GPSGPIGPPG-----IPGP-KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGAL-GPQGQP 556
Query: 195 -IPGPISVPIPGPIPGPISGP-ISGPNPGPIPGPIPG---PISGPNPGPIPGPISGPNPG 249
+PGP PGP PGP P + P P P +P I G P G G N G
Sbjct: 557 GLPGP-----PGP-PGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGG 610
>gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo
sapiens]
Length = 1032
Score = 105 bits (263), Expect = 6e-23
Identities = 86/288 (29%), Positives = 116/288 (40%), Gaps = 40/288 (13%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP 138
GPG G A+ GPG PG A + GP + G PG A + P A + GP
Sbjct: 32 GPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSG--PGKAIVSGPGKAIVSGP 89
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
G + GP + + GP G A + GP SGP + GP + GP + GP
Sbjct: 90 --GKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 145
Query: 199 ISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP----ISGPNPGL 250
+ GP +SGP +SGP + GP +SG + GP +SG +
Sbjct: 146 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGLGKAI 205
Query: 251 IPGPIPGPISGPGPIIGPIPSPAQIPGPGR------------------LQGPGPILSPGR 292
+ +SGPG I P A + GPG+ + GPG + G
Sbjct: 206 VSSLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSLGKAIVCSLGKAIVSGPGKAIVSGL 265
Query: 293 MRSPGSLPGLAPILGPG----SGPGSGSVPAP----IPGPGSLPAPAP 332
++ S PG A + GPG SGPG V P + GPG P
Sbjct: 266 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 313
Score = 99.4 bits (246), Expect = 5e-21
Identities = 69/214 (32%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG 181
P A + P A + GP G + GP + + GP G A + GP SGP + G
Sbjct: 25 PPKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGPGKAIVSG 80
Query: 182 PNPGPIPGPISGPIPGPISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPG 237
P + GP + GP + GP +SGP +SGP + GP +SGP
Sbjct: 81 PGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKA 140
Query: 238 PIPGP----ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGR--LQGPGPILSPG 291
+ GP +SGP ++ GP +SGPG I P A + G G+ + GPG + G
Sbjct: 141 IVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSG 200
Query: 292 RMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPG 325
++ S G A + GPG SG A + GPG
Sbjct: 201 LGKAIVSSLGKAIVSGPGKAIVSGPGKAIVSGPG 234
Score = 90.9 bits (224), Expect = 2e-18
Identities = 80/269 (29%), Positives = 111/269 (41%), Gaps = 21/269 (7%)
Query: 70 ICSLHQAW-GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIP 128
+CSL +A GPG G+ A+ GPG PG A + GP + GP G A +
Sbjct: 246 VCSLGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP--GKAIVS 303
Query: 129 SPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIP 188
P A + GP G + GP + + GP G A + G SGP + G +
Sbjct: 304 GPGKAIVSGP--GKAIVSGPGKAIVSGP--GKAIVSGLGKAIVSGPGKAIVSGLGKAIVS 359
Query: 189 GPISGPIPGPISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP-- 242
+ GP + GP +SGP +S + +SGP + G
Sbjct: 360 SLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSLGKAIVCSLGKAIVSGPGKAIVSGLGK 419
Query: 243 --ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRL----QGPGPILSPGRMRSP 296
+SGP ++ GP +SGPG I P A + GPG+ G + S G+
Sbjct: 420 AIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSLGKAIVCSLGKAIVS 479
Query: 297 GSLPGLAPILGPGSGPGSGSVPAPIPGPG 325
G PG A + GPG SG A + GPG
Sbjct: 480 G--PGKAIVSGPGKAIVSGPGKAIVSGPG 506
Score = 89.0 bits (219), Expect = 7e-18
Identities = 64/203 (31%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 148 PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPI 207
P + + GP G A + GP SGP + GP + GP + GP + GP
Sbjct: 25 PPKAIVSGP--GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPG 82
Query: 208 PGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP----ISGPNPGLIPGP----I 255
+SGP +SGP + GP +SGP + GP +SGP ++ GP +
Sbjct: 83 KAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIV 142
Query: 256 PGP----ISGPGPIIGPIPSPAQIPGPGR--LQGPGPILSPGRMRSPGSLPGLAPILGPG 309
GP +SGPG I P A + GPG+ + GPG + G ++ S PG A + G G
Sbjct: 143 SGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGLG 202
Query: 310 SGPGSGSVPAPIPGPGSLPAPAP 332
S A + GPG P
Sbjct: 203 KAIVSSLGKAIVSGPGKAIVSGP 225
Score = 88.2 bits (217), Expect = 1e-17
Identities = 77/272 (28%), Positives = 108/272 (39%), Gaps = 24/272 (8%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP 138
GPG G+ A+ G PG A + GP + GP G A + S A +
Sbjct: 192 GPGKAIVSGLGKAIVSSLGKAIVSGPGKAIVSGPGKAIVSGP--GKAIVSSLGKAIVCS- 248
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
G + GP + + G G A + GP SGP + GP + GP + GP
Sbjct: 249 -LGKAIVSGPGKAIVSG--LGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 305
Query: 199 ISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP------------ 242
+ GP +SGP +SGP + G +SGP + G
Sbjct: 306 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGLGKAIVSSLGKAI 365
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGR--LQGPGPILSPGRMRSPGSLP 300
+SGP ++ GP +SGPG I A + G+ + GPG + G ++ S P
Sbjct: 366 VSGPGKAIVSGPGKAIVSGPGKAIVSSLGKAIVCSLGKAIVSGPGKAIVSGLGKAIVSGP 425
Query: 301 GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAP 332
G A + GPG SG A + GPG P
Sbjct: 426 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 457
Score = 83.6 bits (205), Expect = 3e-16
Identities = 90/324 (27%), Positives = 123/324 (37%), Gaps = 72/324 (22%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP 138
GPG G A+ GPG PG A + GP + GP G A + P A + GP
Sbjct: 112 GPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGP 169
Query: 139 ----ISGPVQ----------IPGPFRGPIPGP------------ISGP--APIPGP---- 166
+SGP + + GP + + G +SGP A + GP
Sbjct: 170 GKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGLGKAIVSSLGKAIVSGPGKAIVSGPGKAI 229
Query: 167 ISGP--------------------FSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGP 206
+SGP SGP + G + GP + GP + GP
Sbjct: 230 VSGPGKAIVSSLGKAIVCSLGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGP 289
Query: 207 IPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP----ISGPNPGLIPGPIPGP 258
+SGP +SGP + GP +SGP + GP +SG ++ GP
Sbjct: 290 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGLGKAIVSGPGKAI 349
Query: 259 ISGPGPIIGPIPSPAQIPGPGRL--QGPGPILSPGRMRSPGSLPGLAPILGPG----SGP 312
+SG G I A + GPG+ GPG + G ++ S G A + G SGP
Sbjct: 350 VSGLGKAIVSSLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSLGKAIVCSLGKAIVSGP 409
Query: 313 G----SGSVPAPIPGPGSLPAPAP 332
G SG A + GPG P
Sbjct: 410 GKAIVSGLGKAIVSGPGKAIVSGP 433
Score = 81.6 bits (200), Expect = 1e-15
Identities = 78/292 (26%), Positives = 106/292 (36%), Gaps = 41/292 (14%)
Query: 80 PGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPI 139
PG + A+ GPG PG A + GP G PG A + SP A + GP
Sbjct: 713 PGKAIVSSLGKAIVSGPGKAIVSSPGKAIVSGP--GKAIVSSPGKAIVSSPGKAIVSGPG 770
Query: 140 SGPVQIPGPFRGPIPGPIS----GPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPI 195
V PG PG G A + P S + + +
Sbjct: 771 KAIVSSPGKAIVSSPGKAIVSGLGKAIVSSPGKAIVSSLGKAIVSSLGKAIVSSLGKAIV 830
Query: 196 PGP---ISV--------------------------PIPGPIPGPISGPISGPNPGPIPGP 226
GP IS+ P + GP +SGP + GP
Sbjct: 831 SGPGKAISIRVMTILTPECILNLFHFSHLLHLLCQPPKAIVSGPGKAIVSGPGKAIVSGP 890
Query: 227 IPGPISGPNPGPIPGP----ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGR-- 280
+SGP + GP +SGP ++ GP +SGPG I P A + GPG+
Sbjct: 891 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAI 950
Query: 281 LQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAP 332
+ PG + G ++ S PG A + GPG SG A + GPG +P
Sbjct: 951 VSSPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSP 1002
Score = 78.6 bits (192), Expect = 1e-14
Identities = 87/356 (24%), Positives = 127/356 (35%), Gaps = 93/356 (26%)
Query: 70 ICSLHQAW-GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP----IPGP 124
+CSL +A GPG G+ A+ GPG PG A + GP + GP + GP
Sbjct: 398 VCSLGKAIVSGPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 457
Query: 125 AQ----------IPSPIPAPIPGP----ISGPVQ--IPGPFRGPIPGP------------ 156
+ + S A + GP +SGP + + GP + + GP
Sbjct: 458 GKAIVSSLGKAIVCSLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIISSLGKAI 517
Query: 157 --------ISGP----------------------------------APIPGPISGPFSGP 174
+SGP A + GP S P
Sbjct: 518 VCSLGKAIVSGPGKAIVSGLGKAIVSSLGKAIVSSLGKAIVSSLGKAIVSGPGKAIVSSP 577
Query: 175 NPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGP 230
+ GP + GP + GP + GP +S P +SGP + P
Sbjct: 578 GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSGPGKAIVSSPGKAI 637
Query: 231 ISGPNPGPIPGP----ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGR--LQGP 284
+S P + P +S P ++ P +S PG I A + GPG+ + GP
Sbjct: 638 VSSPGKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSLGKAIVSGPGKAIVSGP 697
Query: 285 GPILSPGRMRSPGSLPGLAPILGPG----SGPGSGSVPAP----IPGPGSLPAPAP 332
G + G ++ S PG A + G SGPG V +P + GPG +P
Sbjct: 698 GKAIVSGPGKAIVSSPGKAIVSSLGKAIVSGPGKAIVSSPGKAIVSGPGKAIVSSP 753
Score = 72.4 bits (176), Expect = 7e-13
Identities = 74/271 (27%), Positives = 100/271 (36%), Gaps = 28/271 (10%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP 138
GPG A+ GPG PG A + GP + GP G A + SP A + GP
Sbjct: 568 GPGKAIVSSPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP--GKAIVSSPGKAIVSGP 625
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSG--PNPGPIPGPNPGP---------- 186
V PG PG +P +S P +PG +PG
Sbjct: 626 GKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSPGKAIVSSLGKAI 685
Query: 187 IPGPISGPIPGPISVPIPGPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP 242
+ GP + GP + GP +S P +S + GP +S P + GP
Sbjct: 686 VSGPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSSLGKAIVSGPGKAIVSSPGKAIVSGP 745
Query: 243 ----ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPG- 297
+S P ++ P +SGPG I P A + PG+ G L + SPG
Sbjct: 746 GKAIVSSPGKAIVSSPGKAIVSGPGKAIVSSPGKAIVSSPGKAIVSG--LGKAIVSSPGK 803
Query: 298 ---SLPGLAPILGPGSGPGSGSVPAPIPGPG 325
S G A + G S A + GPG
Sbjct: 804 AIVSSLGKAIVSSLGKAIVSSLGKAIVSGPG 834
Score = 71.6 bits (174), Expect = 1e-12
Identities = 84/339 (24%), Positives = 111/339 (32%), Gaps = 85/339 (25%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGP------LPGSIPGPIPGPAQIPSPIP 132
GPG G A+ GPG PG A + GP PG PG A + SP
Sbjct: 592 GPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSGPGKAIVSSPGKAIVSSPGKAIVSSPGK 651
Query: 133 APIPGPISGPVQIPGPFRGPIPGPIS----GPAPIPGPISGPFSGPNPGPIPGPNPGPIP 188
A + P V PG PG G A + GP SGP + GP +
Sbjct: 652 AIVSSPGKAIVSSPGKAIVSSPGKAIVSSLGKAIVSGPGKAIVSGPGKAIVSGPGKAIVS 711
Query: 189 GP------------ISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNP 236
P +SGP +S P + GP +S P + P +SGP
Sbjct: 712 SPGKAIVSSLGKAIVSGPGKAIVSSPGKAIVSGPGKAIVSSPGKAIVSSPGKAIVSGPGK 771
Query: 237 GPIPGP----ISGPNPGLIPGPIPGPISGPGPII--------------GPIPS--PAQIP 276
+ P +S P ++ G +S PG I + S A +
Sbjct: 772 AIVSSPGKAIVSSPGKAIVSGLGKAIVSSPGKAIVSSLGKAIVSSLGKAIVSSLGKAIVS 831
Query: 277 GPGR-----------------------------------LQGPGPILSPGRMRSPGSLPG 301
GPG+ + GPG + G ++ S PG
Sbjct: 832 GPGKAISIRVMTILTPECILNLFHFSHLLHLLCQPPKAIVSGPGKAIVSGPGKAIVSGPG 891
Query: 302 LAPILGPG----SGPGSGSVPAP----IPGPGSLPAPAP 332
A + GPG SGPG V P + GPG P
Sbjct: 892 KAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 930
Score = 70.5 bits (171), Expect = 3e-12
Identities = 71/277 (25%), Positives = 96/277 (34%), Gaps = 63/277 (22%)
Query: 79 GPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP------IPGPAQIPSPIP 132
GPG A+ GPG PG A + P + GP PG A + SP
Sbjct: 728 GPGKAIVSSPGKAIVSGPGKAIVSSPGKAIVSSPGKAIVSGPGKAIVSSPGKAIVSSPGK 787
Query: 133 APIPGPISGPVQIPGPFRGPIPGP------------------ISGPAP------------ 162
A + G V PG G +SGP
Sbjct: 788 AIVSGLGKAIVSSPGKAIVSSLGKAIVSSLGKAIVSSLGKAIVSGPGKAISIRVMTILTP 847
Query: 163 ---------------IPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPI 207
+ P SGP + GP + GP + GP + GP
Sbjct: 848 ECILNLFHFSHLLHLLCQPPKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPG 907
Query: 208 PGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP----ISGPNPGLIPGPIPGPI 259
+SGP +SGP + GP +SGP + GP +S P ++ G +
Sbjct: 908 KAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSGLGKAIV 967
Query: 260 SGPGPIIGPIPSPAQIPGPGR--LQGPGP--ILSPGR 292
SGPG I P A + GPG+ + GPG + SPG+
Sbjct: 968 SGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSPGK 1004
Score = 68.2 bits (165), Expect = 1e-11
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 145 IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIP 204
+ GP + + GP G A + GP SGP + GP + GP + GP +
Sbjct: 871 VSGPGKAIVSGP--GKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVS 928
Query: 205 GPIPGPISGP----ISGPNPGPIPGPIPGPISGPNPGPIPGP----ISGPNPGLIPGPIP 256
GP +SGP +SGP + P +SG + GP +SGP ++ GP
Sbjct: 929 GPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGPGK 988
Query: 257 GPISGPGPIIGPIPSPAQIPGPGR 280
+SGPG I P A + G+
Sbjct: 989 AIVSGPGKAIVSSPGKAIVSSLGK 1012
Score = 60.1 bits (144), Expect = 4e-09
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG 181
PG A + P A + GP G + GP + + GP G A + GP SGP + G
Sbjct: 874 PGKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGP--GKAIVSGPGKAIVSGPGKAIVSG 929
Query: 182 PNPGPIPGP----ISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPG 237
P + GP +SGP +S P + G +SGP + GP +SGP
Sbjct: 930 PGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSGLGKAIVSGPGKAIVSGPGKAIVSGPG-- 987
Query: 238 PIPGPISGPNPGLIPGPIPGPISGPGPII 266
+SGP ++ P +S G I
Sbjct: 988 --KAIVSGPGKAIVSSPGKAIVSSLGKAI 1014
Score = 46.6 bits (109), Expect = 4e-05
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 250 LIPGPIPGPISGPGPIIGPIPSPAQIPGPGR--LQGPGPILSPGRMRSPGSLPGLAPILG 307
L+ P +SGPG I P A + GPG+ + GPG + G ++ S PG A + G
Sbjct: 21 LLCQPPKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSG 80
Query: 308 PG----SGPGSGSVPAP----IPGPGSLPAPAP 332
PG SGPG V P + GPG P
Sbjct: 81 PGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSGP 113
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 103 bits (256), Expect = 4e-22
Identities = 100/316 (31%), Positives = 117/316 (37%), Gaps = 46/316 (14%)
Query: 83 RAQKGIPAALSPGPGPIPAPIPG--PAQIPGPLPGSIPGPIPGPAQIPSPIPAPI---PG 137
R + P+ SP PI P PG PAQ PG S PGP PAQ PS + P+ PG
Sbjct: 290 RGESVKPSLPSPSKPPIQQPTPGKPPAQQPGH-EKSQPGPAKPPAQ-PSGLTKPLAQQPG 347
Query: 138 PISGPVQIPGPFRGPIP--GPISGPAPIPGPISGPFSGPNPG-----PIPGPNPGPIPGP 190
+ PVQ PG + P GP PA G P P P G P PGP
Sbjct: 348 TVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGP 407
Query: 191 ISGPI-----PGPIS----VPIPGPIPGPISGPISGPNPGPIPGPIPGP------ISGPN 235
P P P++ + P PGP P+ P PG IP GP +GP
Sbjct: 408 AKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPT 467
Query: 236 ------PGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILS 289
PGP P P P P PG P G P Q PGP + P P
Sbjct: 468 KPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK---PSP-QQ 523
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
PG + P PG A P S + PL P + S P +Q
Sbjct: 524 PGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQG 583
Query: 350 FP-------HFTELLL 358
P + TELLL
Sbjct: 584 LPKTICPLCNTTELLL 599
Score = 73.2 bits (178), Expect = 4e-13
Identities = 81/278 (29%), Positives = 96/278 (34%), Gaps = 46/278 (16%)
Query: 26 LQQQPQRV-PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRA 84
L QQP V P + G P P A P + P++E GP A
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP---------GPKALA 392
Query: 85 QKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPI---PG---PAQIPSPIPAPIPGP 138
Q PG G PA PGPA+ P G+ P P+ PG PA+ P P
Sbjct: 393 QP-------PGVGKTPAQQPGPAKPPTQQVGT-PKPLAQQPGLQSPAKAPGPTKT----- 439
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
PVQ PGP G IP +GP +GP P+ P P P PGP P P
Sbjct: 440 ---PVQQPGP--GKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQP 494
Query: 199 ISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGP 258
S P PG P P P PG P+ P S P
Sbjct: 495 GSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQP---------- 544
Query: 259 ISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSP 296
S P P G G+ P P +SP + P
Sbjct: 545 -SPAKPSAQQSTKPVSQTGSGKPLQP-PTVSPSAKQPP 580
Score = 35.8 bits (81), Expect = 0.073
Identities = 47/167 (28%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 123 GPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISG-PAPIPGPISGPFSGPNPGPIPG 181
G + S +P+ P S P + P PF IS P P P P P P P P
Sbjct: 2368 GQEKPASQLPSGSPSVSSLPAK-PRPFFRSSSLDISAQPPPPPPP-----PPPPPPPPPP 2421
Query: 182 PNPGPIPGPISGPIP-----GPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPIS---G 233
P P P+P P S P P ++V P P+ ++ + P++
Sbjct: 2422 PPPPPLPPPTS-PKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICT 2480
Query: 234 PNPGPIPGPISGPNPGLI----PGPIPGPISGPGPIIGPIPSPAQIP 276
P P+P S GL+ P P PI+ P P+I +P+ Q P
Sbjct: 2481 TAPPPVPPKPSSIPSGLVFTHRPEPSKPPIA-PKPVIPQLPTTTQKP 2526
Score = 35.8 bits (81), Expect = 0.073
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 196 PGPISVPI-PGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP-GPISGPNPGLIPG 253
P S+P P P S IS P P P P P P P P P P P + P P ++P
Sbjct: 2381 PSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPK 2440
Query: 254 ---PIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGS 310
+ P++ P+ + + L+ + S G + P+ S
Sbjct: 2441 KKLTVASPVTTATPLFDAVTT---------LETTAVLRSNGLPVTRICTTAPPPVPPKPS 2491
Query: 311 GPGSGSVPAPIPGPGSLP-APAPLWPQSPDASDFLPDTQLFPHFTELLL 358
SG V P P P AP P+ PQ P + T + P T L L
Sbjct: 2492 SIPSGLVFTHRPEPSKPPIAPKPVIPQLPTTTQ--KPTDIHPKPTGLSL 2538
Score = 33.1 bits (74), Expect = 0.47
Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 80 PGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPI 139
P + G P+ S P P I P P P P P P P P P+P P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPT 2431
Query: 140 SGPVQIPGPFRGPIPGPISGPAPIPGPIS---------------GPFSGPNPGPIPGPNP 184
S I + + P++ P+ ++ P P+P P P
Sbjct: 2432 SPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTAPPPVP-PKP 2490
Query: 185 GPIP-GPISGPIPGPISVPI-PGPI 207
IP G + P P PI P P+
Sbjct: 2491 SSIPSGLVFTHRPEPSKPPIAPKPV 2515
Score = 29.6 bits (65), Expect = 5.2
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 270 PSPAQIPGPGRLQGPGPI-LSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSL- 327
P+P +I L+ + L+P +SP L L PG S VP P P +
Sbjct: 3593 PTPLEIGYSSHLRADSTVQLAPSPPKSPKVLYSPISPLSPGKALESAFVPYEKPLPDDIS 3652
Query: 328 ------PAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQEGDDS 381
P A + P SP + + + P PL P S S QY EG +
Sbjct: 3653 PQKVLHPDMAKVPPASPKTAKMMQRSMSDPK------PLSPTADES-SRAPFQYTEGYTT 3705
Query: 382 MGKK---HSGSQ 390
G + SG+Q
Sbjct: 3706 KGSQTMTSSGAQ 3717
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 103 bits (256), Expect = 4e-22
Identities = 100/316 (31%), Positives = 117/316 (37%), Gaps = 46/316 (14%)
Query: 83 RAQKGIPAALSPGPGPIPAPIPG--PAQIPGPLPGSIPGPIPGPAQIPSPIPAPI---PG 137
R + P+ SP PI P PG PAQ PG S PGP PAQ PS + P+ PG
Sbjct: 290 RGESVKPSLPSPSKPPIQQPTPGKPPAQQPGH-EKSQPGPAKPPAQ-PSGLTKPLAQQPG 347
Query: 138 PISGPVQIPGPFRGPIP--GPISGPAPIPGPISGPFSGPNPG-----PIPGPNPGPIPGP 190
+ PVQ PG + P GP PA G P P P G P PGP
Sbjct: 348 TVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGP 407
Query: 191 ISGPI-----PGPIS----VPIPGPIPGPISGPISGPNPGPIPGPIPGP------ISGPN 235
P P P++ + P PGP P+ P PG IP GP +GP
Sbjct: 408 AKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPT 467
Query: 236 ------PGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILS 289
PGP P P P P PG P G P Q PGP + P P
Sbjct: 468 KPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK---PSP-QQ 523
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
PG + P PG A P S + PL P + S P +Q
Sbjct: 524 PGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQG 583
Query: 350 FP-------HFTELLL 358
P + TELLL
Sbjct: 584 LPKTICPLCNTTELLL 599
Score = 73.2 bits (178), Expect = 4e-13
Identities = 81/278 (29%), Positives = 96/278 (34%), Gaps = 46/278 (16%)
Query: 26 LQQQPQRV-PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRA 84
L QQP V P + G P P A P + P++E GP A
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP---------GPKALA 392
Query: 85 QKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPI---PG---PAQIPSPIPAPIPGP 138
Q PG G PA PGPA+ P G+ P P+ PG PA+ P P
Sbjct: 393 QP-------PGVGKTPAQQPGPAKPPTQQVGT-PKPLAQQPGLQSPAKAPGPTKT----- 439
Query: 139 ISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGP 198
PVQ PGP G IP +GP +GP P+ P P P PGP P P
Sbjct: 440 ---PVQQPGP--GKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQP 494
Query: 199 ISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGP 258
S P PG P P P PG P+ P S P
Sbjct: 495 GSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQP---------- 544
Query: 259 ISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSP 296
S P P G G+ P P +SP + P
Sbjct: 545 -SPAKPSAQQSTKPVSQTGSGKPLQP-PTVSPSAKQPP 580
Score = 35.8 bits (81), Expect = 0.073
Identities = 47/167 (28%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 123 GPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISG-PAPIPGPISGPFSGPNPGPIPG 181
G + S +P+ P S P + P PF IS P P P P P P P P
Sbjct: 2368 GQEKPASQLPSGSPSVSSLPAK-PRPFFRSSSLDISAQPPPPPPP-----PPPPPPPPPP 2421
Query: 182 PNPGPIPGPISGPIP-----GPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPIS---G 233
P P P+P P S P P ++V P P+ ++ + P++
Sbjct: 2422 PPPPPLPPPTS-PKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICT 2480
Query: 234 PNPGPIPGPISGPNPGLI----PGPIPGPISGPGPIIGPIPSPAQIP 276
P P+P S GL+ P P PI+ P P+I +P+ Q P
Sbjct: 2481 TAPPPVPPKPSSIPSGLVFTHRPEPSKPPIA-PKPVIPQLPTTTQKP 2526
Score = 35.8 bits (81), Expect = 0.073
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 196 PGPISVPI-PGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP-GPISGPNPGLIPG 253
P S+P P P S IS P P P P P P P P P P P + P P ++P
Sbjct: 2381 PSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPK 2440
Query: 254 ---PIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGS 310
+ P++ P+ + + L+ + S G + P+ S
Sbjct: 2441 KKLTVASPVTTATPLFDAVTT---------LETTAVLRSNGLPVTRICTTAPPPVPPKPS 2491
Query: 311 GPGSGSVPAPIPGPGSLP-APAPLWPQSPDASDFLPDTQLFPHFTELLL 358
SG V P P P AP P+ PQ P + T + P T L L
Sbjct: 2492 SIPSGLVFTHRPEPSKPPIAPKPVIPQLPTTTQ--KPTDIHPKPTGLSL 2538
Score = 33.1 bits (74), Expect = 0.47
Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 80 PGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPI 139
P + G P+ S P P I P P P P P P P P P+P P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPT 2431
Query: 140 SGPVQIPGPFRGPIPGPISGPAPIPGPIS---------------GPFSGPNPGPIPGPNP 184
S I + + P++ P+ ++ P P+P P P
Sbjct: 2432 SPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTAPPPVP-PKP 2490
Query: 185 GPIP-GPISGPIPGPISVPI-PGPI 207
IP G + P P PI P P+
Sbjct: 2491 SSIPSGLVFTHRPEPSKPPIAPKPV 2515
Score = 29.6 bits (65), Expect = 5.2
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 270 PSPAQIPGPGRLQGPGPI-LSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSL- 327
P+P +I L+ + L+P +SP L L PG S VP P P +
Sbjct: 3593 PTPLEIGYSSHLRADSTVQLAPSPPKSPKVLYSPISPLSPGKALESAFVPYEKPLPDDIS 3652
Query: 328 ------PAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQEGDDS 381
P A + P SP + + + P PL P S S QY EG +
Sbjct: 3653 PQKVLHPDMAKVPPASPKTAKMMQRSMSDPK------PLSPTADES-SRAPFQYTEGYTT 3705
Query: 382 MGKK---HSGSQ 390
G + SG+Q
Sbjct: 3706 KGSQTMTSSGAQ 3717
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 101 bits (251), Expect = 1e-21
Identities = 100/376 (26%), Positives = 136/376 (36%), Gaps = 59/376 (15%)
Query: 87 GIPAALSP----GPGPIPAPIPGPAQIPGPLPGSIPGPI------PGP---AQIPSPIPA 133
G+PA L+P PG +P P G A+ P P P ++ P+ P P A P P
Sbjct: 1337 GLPAVLNPRPTLTPGRLPTPTLGTARAPMPTP-TLVRPLLKLVHSPSPEVSASAPGAAPL 1395
Query: 134 PIPGPISGPVQIPGPFRGPIPGPISGP--APIPGPISGPFSGPNPGPIPGPNPGPIPGPI 191
I P+ P +PGP P+P P S P +P+ +S P S P +P P P P+
Sbjct: 1396 TISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPL 1455
Query: 192 SGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNP---------GPIPGP 242
+ PI P++V GP P P PGP SG +P P
Sbjct: 1456 TIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSL 1515
Query: 243 ISGPNPG--LIPGPIPGPISGPGPIIGPIPSPAQIP----------GPGRLQGPGPILSP 290
S PG L+ P + G + P SP +P P +L+P
Sbjct: 1516 SSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAP 1575
Query: 291 GRMRSPGSLPGLAP-------ILGPGSGPGSGSVPAPIPGPGSLP------APAPLWPQS 337
S LAP IL P P +P P PG+ P P P+ S
Sbjct: 1576 ASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPS 1635
Query: 338 PDASDFL--------PDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQEGDDSMGKKHSGS 389
L P L P T+ +LP P+ S ++Q ++ GS
Sbjct: 1636 STPGTSLASASPVPAPTPVLAPSSTQTMLPA-PVPSPLPSPASTQTLALAPALAPTLGGS 1694
Query: 390 QPQEEGGSVNENHSGP 405
P + N GP
Sbjct: 1695 SPSQTLSLGTGNPQGP 1710
Score = 94.7 bits (234), Expect = 1e-19
Identities = 81/261 (31%), Positives = 105/261 (40%), Gaps = 26/261 (9%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPL-------PGSIPGPIPGPAQIPSPIPAPIPGPISGPVQ 144
L+P P PAP P + +P L PG +P P G A+ P P P + P+ V
Sbjct: 1321 LTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVR-PLLKLVH 1379
Query: 145 IPGP-----FRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPI 199
P P G P IS P +P + GP S P P P P P+ +S P+ +
Sbjct: 1380 SPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSL 1439
Query: 200 SVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPI 259
+ +P +P P S P++ PI P+ SGP P P PGP
Sbjct: 1440 PISVPTTLPAPASAPLT----IPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAP 1495
Query: 260 SGPGPIIGPIP-SPAQIPGPGRLQGPGP--ILSPGRMRSPG----SLPGLAPILGPGSGP 312
SG P + A P Q PG +L+P PG P +P+L P S
Sbjct: 1496 SGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASAL 1555
Query: 313 GS--GSVPAPIPGPGSLPAPA 331
S S P P P SL APA
Sbjct: 1556 ASPFPSAPNPAPAQASLLAPA 1576
Score = 84.3 bits (207), Expect = 2e-16
Identities = 86/287 (29%), Positives = 111/287 (38%), Gaps = 37/287 (12%)
Query: 91 ALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPI----SGPVQI- 145
A++P PGP P + LP S P P P + P+ A P +G V+I
Sbjct: 1262 AVAPTPGPTPVSV---------LPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIV 1312
Query: 146 --PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPI--PGPNPGPIPGPISGPIPGPISV 201
P G P P PAP P P SG + NP P PG P P G P+P P V
Sbjct: 1313 VRQAPRDGLTPVPPLAPAPRP-PSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLV 1371
Query: 202 -PIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+ + P S +S PG P I P+ P+ +PGP S P P I
Sbjct: 1372 RPLLKLVHSP-SPEVSASAPGAAPLTISSPLHVPSS--LPGPASSPMP----------IP 1418
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPG--SGSVP 318
P+ P+ S +P L P P +P ++P AP+ SGP + P
Sbjct: 1419 NSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTP 1478
Query: 319 APIPGPGSLPAPAPLWPQ--SPDASDFLPDTQLFPHFTELLLPLDPL 363
P + P P L P SP AS P + P PL
Sbjct: 1479 PLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPL 1525
Score = 81.6 bits (200), Expect = 1e-15
Identities = 97/380 (25%), Positives = 130/380 (34%), Gaps = 86/380 (22%)
Query: 44 APLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK--GIPAALSPGPGPIP- 100
AP+VPAA P PSG P+A L A P + + G P L+P +P
Sbjct: 1481 APVVPAAPGP-PSLAPSGASPSASALTLGLATA---PSLSSSQTPGHPLLLAPTSSHVPG 1536
Query: 101 -----APIPGPAQIPG-----PLPGSIPGPIPGPAQIPSP-------------------- 130
AP P +P P P S P P P A + +P
Sbjct: 1537 LNSTVAPACSPVLVPASALASPFP-SAPNPAPAQASLLAPASSASQALATPLAPMAAPQT 1595
Query: 131 -IPAPIPGPISGPVQI--PGPFRGPIPGPISGPAPIPGPISGPFSG-PNPGPIPGPNPGP 186
I AP P P P+ + P P P+ P P+ P S P + + P+P P P
Sbjct: 1596 AILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVL 1655
Query: 187 IPGPISGPIPGPISVPIPGPIP------GPISGP-ISGPNP------------GPIPG-- 225
P +P P+ P+P P P P + G +P GP P
Sbjct: 1656 APSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQT 1715
Query: 226 ----------PIPGPISGPNPGPIPGPIS----GPNPGLIPGPIPGPISGPGPIIGPIPS 271
P P PGP GP P P L P GP + P S
Sbjct: 1716 LSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASS 1775
Query: 272 PAQIPGPGRLQ----GPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSL 327
A + P +Q P P+ + G P + LA P S + + G+
Sbjct: 1776 SASLLAPASVQTLTLSPAPVPTLG----PAAAQTLALAPASTQSPASQASSLVVSASGAA 1831
Query: 328 PAPAPLWPQSPDASDFLPDT 347
P P + + P + D PDT
Sbjct: 1832 PLPVTMVSRLPVSKD-EPDT 1850
Score = 61.2 bits (147), Expect = 2e-09
Identities = 84/327 (25%), Positives = 105/327 (32%), Gaps = 43/327 (13%)
Query: 41 ARAAPLVPAASAS-------APQRGPSGIL--PAAEPTICSLHQAWGGPGCR-----AQK 86
A+A+ L PA+SAS AP P + P+ P + L PG +Q
Sbjct: 1568 AQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQT 1627
Query: 87 GIPA-ALSPGPG-------PIPAPIP--GPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP 136
+P A S PG P+PAP P P+ LP +P P+P PA + AP
Sbjct: 1628 PVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPAL 1687
Query: 137 GPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGP------IPGPNPGPIPGP 190
P G P G GP P P S P P PGP GP
Sbjct: 1688 APTLGG-SSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTL 1746
Query: 191 ISGPIP--GPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNP 248
P P P S P P P S P + P P P GP +
Sbjct: 1747 SLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTL 1806
Query: 249 GLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGP 308
L P P S ++ A P P+ R+ P +
Sbjct: 1807 ALAPASTQSPASQASSLVVSASGAA----------PLPVTMVSRLPVSKDEPDTLTLRSG 1856
Query: 309 GSGPGSGSVPAPIPGPGSLPAPAPLWP 335
P S + P P P P P P
Sbjct: 1857 PPSPPSTATSFGGPRPRRQPPPPPRSP 1883
Score = 55.1 bits (131), Expect = 1e-07
Identities = 78/306 (25%), Positives = 110/306 (35%), Gaps = 34/306 (11%)
Query: 43 AAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAP 102
AAP +++ S+P+ GPS P T + G G Q P L PG +
Sbjct: 2699 AAPSTSSSATSSPE-GPSPARPPRRRTSADVEIRGQGTGRPGQPPGPKVLRKLPGRLVTV 2757
Query: 103 IPGPAQIPGPLP--GSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGP 160
+ + G+ +PG ++ + +P +SGP P PI GP
Sbjct: 2758 VEEKELVRRRRQQRGAASTLVPGVSETSASPGSPSVRSMSGPESSP-----PIGGPCEAA 2812
Query: 161 --APIPGPISGPFSGPNP---GPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPI 215
+ +P P PF G G +P G + P + P S
Sbjct: 2813 PSSSLPTPPQQPFIARRHIELGVTGGGSPENGDGALLAITPPAVKRRRGRPPKKNRSPAD 2872
Query: 216 SGPNPGPIPGP-IPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQ 274
+G P + G +G +P P P + +P L P IPGP Q
Sbjct: 2873 AGRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIPGP---------------Q 2917
Query: 275 IPGPGRLQGPGPILSPGRMRSPGSLPGL--APILGPGSGPGSGSVPAPIPGPGSLPAPAP 332
GP + P P+LSP R G P PI G S G G+ + P P P+P
Sbjct: 2918 PLGPQPVHRPNPLLSPVEKRRRGRPPKARDLPIPGTISSAGDGNSESRTQPP---PHPSP 2974
Query: 333 LWPQSP 338
L P P
Sbjct: 2975 LTPLPP 2980
Score = 54.3 bits (129), Expect = 2e-07
Identities = 48/161 (29%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 80 PGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPI 139
PG R + + A + G P+ Q + P P ++P P P P P P
Sbjct: 2391 PGTRVSERLRGARAETQGANHTPVISAHQTRSTT--TPPRCSPARERVPRPAPRPRPTPA 2448
Query: 140 SGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPI------PGPNPGPIPGPISG 193
S P IP +P P+S P PI S PNP I P P P P S
Sbjct: 2449 SAPAAIPAL----VPVPVSAPVPI--------SAPNPITILPVHILPSPPPPSQIPPCSS 2496
Query: 194 P--IPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPIS 232
P P P P P P P + P+ + GP PIS
Sbjct: 2497 PACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSVPIS 2537
Score = 53.5 bits (127), Expect = 3e-07
Identities = 61/237 (25%), Positives = 84/237 (35%), Gaps = 38/237 (16%)
Query: 88 IPAALSPGPGPIPAPI---------PGPAQI---------PGPLPGSIP-GPIPGPAQIP 128
+ A +P P P P P+ P P Q P G +P P PGP
Sbjct: 975 LEVATAPDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSA 1034
Query: 129 SPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIP 188
P P P+P + + + GP P S P PGP+ P PN G +P P P+
Sbjct: 1035 QPTPGPVPQVLPASLMVSASPAGPPLIPASRP---PGPVLLPPLQPNSGSLPQVLPSPL- 1090
Query: 189 GPISG----PIPGPISVPIPGPIPGPIS-GPISGPNPGPIPGPIPGPISGPNPGPIPGPI 243
G +SG P P P P P P+ P P + P+ P P
Sbjct: 1091 GVLSGTSRPPTPTLSLKPTP---PAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTT 1147
Query: 244 SGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP 300
S +P P P +I A++P G ++S G++ S P
Sbjct: 1148 STTTATATTTAVPAPTPAPQRLILSPDMQARLPS-------GEVVSIGQLASLAQRP 1197
Score = 51.2 bits (121), Expect = 2e-06
Identities = 56/197 (28%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 182 PNPGPIPGPISGPIPGPISVPIP---GPIPGPISGPISGPNPGPIPGPIPGPISGPNPGP 238
P+P P P P+ + + P+P G ++ P + P P+ P PGP P P
Sbjct: 981 PDPPPRPKPVKMKVNRMLQ-PVPKQEGRTVVVVNNPRAPLGPVPVRPP-PGPELSAQPTP 1038
Query: 239 IPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGS 298
GP P ++P + S GP + P P PGP+L P + GS
Sbjct: 1039 ------GPVPQVLPASLMVSASPAGPPLIPASRP-----------PGPVLLPPLQPNSGS 1081
Query: 299 LPGLAPI-LGPGSGPGSGSVPAPIPGPGSLPAPAPLWP-QSPDASDFLPDTQLFPHFTEL 356
LP + P LG SG P P + PAP L P P +S L + P +T
Sbjct: 1082 LPQVLPSPLGVLSGTSRPPTPTLSLKP-TPPAPVRLSPAPPPGSSSLLKPLTVPPGYT-- 1138
Query: 357 LLPLDPLEGSSVSTMTS 373
P ++ ST T+
Sbjct: 1139 ---FPPAAATTTSTTTA 1152
Score = 50.4 bits (119), Expect = 3e-06
Identities = 63/209 (30%), Positives = 77/209 (36%), Gaps = 25/209 (11%)
Query: 190 PISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNP---GPIPGPISGP 246
P P + P P P P P S P + P P+P P PIS PNP P+ S P
Sbjct: 2427 PRCSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITILPVHILPSPP 2486
Query: 247 NPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPI- 305
P IP P P P P P P+ P L P L G P S+P A +
Sbjct: 2487 PPSQIP-PCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLG----PPSVPISASVT 2541
Query: 306 -LGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELL------L 358
L G P + + P SL A + + +P L P E+L L
Sbjct: 2542 NLPLGLRPEAELCAQALASPESLEL-ASVASSETSSLSLVPPKDLLPVAVEILPVSEKNL 2600
Query: 359 PLDP------LEGSSVSTMTSQYQEGDDS 381
L P LE S+ Q QE DS
Sbjct: 2601 SLTPSAPSLTLEAGSIP--NGQEQEAPDS 2627
Score = 49.7 bits (117), Expect = 5e-06
Identities = 92/380 (24%), Positives = 138/380 (36%), Gaps = 90/380 (23%)
Query: 25 RLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRA 84
++ + Q VP Q GR A P R P G +A+PT PG
Sbjct: 993 KVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPT----------PGPVP 1042
Query: 85 QKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQ 144
Q +PA+L P P+ ++ PGP+ +P P +P +P+P+ G +SG +
Sbjct: 1043 QV-LPASLMVSASPAGPPLIPASRPPGPV--LLPPLQPNSGSLPQVLPSPL-GVLSGTSR 1098
Query: 145 IPGP---FRGPIPGPIS-GPAPIPGPIS--GPFSGPNPG--------------------- 177
P P + P P+ PAP PG S P + P PG
Sbjct: 1099 PPTPTLSLKPTPPAPVRLSPAPPPGSSSLLKPLTVP-PGYTFPPAAATTTSTTTATATTT 1157
Query: 178 PIPGPNPGP----IPGPISGPIP-------GPISVPIPGPIPG-----PISGPISGPNPG 221
+P P P P + + +P G ++ P+ P++ I G N
Sbjct: 1158 AVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLASLAQRPVANAGGSKPLTFQIQG-NKL 1216
Query: 222 PIPGPIPGPISGPNPGPIPGPI-----SGPNPGLIPGP-------IPGPISGPGPI-IGP 268
+ G ++ P P+ + +G LI P P GP P+ + P
Sbjct: 1217 TLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQPAHVALIQAVAPTPGPTPVSVLP 1276
Query: 269 IPSPAQIPGPGRLQGP--GPILSPGRMRSPGSL---------PGLAPI--LGPGSGPGSG 315
+P+ P P L P + P + + G + GL P+ L P P S
Sbjct: 1277 SSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIVVRQAPRDGLTPVPPLAPAPRPPSS 1336
Query: 316 SVPA-----PIPGPGSLPAP 330
+PA P PG LP P
Sbjct: 1337 GLPAVLNPRPTLTPGRLPTP 1356
Score = 44.3 bits (103), Expect = 2e-04
Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 148 PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISV----PI 203
P R +P P P P P P S P + IP P P+ P+ P PI++ +
Sbjct: 2431 PARERVPRP--APRPRPTPASAPAA------IPALVPVPVSAPVPISAPNPITILPVHIL 2482
Query: 204 PGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P P P P S P P P P P P P + P+ L+ GP PIS
Sbjct: 2483 PSPPPPSQIPPCSSPACTPPPACTPPP--AHTPPPAQTCLVTPSSPLLLGPPSVPIS 2537
Score = 35.4 bits (80), Expect = 0.095
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 21 ARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGP-------SGILPAAEPTICSL 73
A + R P R R R R AP ASAP P S +P + P ++
Sbjct: 2417 AHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITI 2476
Query: 74 HQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP----IPGPAQIP 128
P IP SP P PA P PA P P + P + GP +P
Sbjct: 2477 LPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSVP 2535
Score = 35.4 bits (80), Expect = 0.095
Identities = 65/259 (25%), Positives = 87/259 (33%), Gaps = 63/259 (24%)
Query: 125 AQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGP---------ISGPFSGPN 175
A+ P+ P ++ V P P GP+P P I G +G
Sbjct: 2680 AKTPTSSPEKPQELVTAEVAAPSTSSSATSSP-EGPSPARPPRRRTSADVEIRGQGTG-R 2737
Query: 176 PGPIPGPNP-GPIPGPISGPIP------------GPISVPIPG-----PIPG-PISGPIS 216
PG PGP +PG + + G S +PG PG P +S
Sbjct: 2738 PGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQRGAASTLVPGVSETSASPGSPSVRSMS 2797
Query: 217 GPNPGPIPGPIPGPISGPNPGPIPGPISGP-------NPGLIPGPIPGPISGPGPIIGPI 269
GP P PI GP +P P P G+ G P +G G ++
Sbjct: 2798 GPESSP---PIGGPCEAAPSSSLPTPPQQPFIARRHIELGVTGGG--SPENGDGALLAIT 2852
Query: 270 PSPAQIPGPGRLQGPGPILSPGRMRSPG------------SLPGLAPILGPGSGPGSGSV 317
P P R +G P + RSP +L G P GP + V
Sbjct: 2853 P-----PAVKRRRGR----PPKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETLIV 2903
Query: 318 PAPIPGPGSLPAPAPLWPQ 336
P+ P +P P PL PQ
Sbjct: 2904 ADPVLEPQLIPGPQPLGPQ 2922
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 99.8 bits (247), Expect = 4e-21
Identities = 138/399 (34%), Positives = 158/399 (39%), Gaps = 95/399 (23%)
Query: 30 PQRVPGQRGR-GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
P PG GR G P P + G + P P + A G G R G
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 89 PA-----ALSPGPGPI----PAPIPGPAQIPGPLPG-SIPGPIPGPAQIPSPIPAPIPGP 138
P L PGP P PGP PG LPG + GP PGP IP PI P
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGP-PGPPGIPGPIGQPGLHG 840
Query: 139 ISGPVQIPGPFRGPIPGP-----ISGPAPIPGPISGPFSGPNPGP-----IPGPN----- 183
I G PGP +PGP G PGPI P S PG PG
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 184 ---PGPIPGPISGPIPGPISVP----------IPGPIPGPISGPISGPNPGPIPGPIPGP 230
PGP PGP+ IPG VP PG +PGP S PG +PGP PGP
Sbjct: 901 MGPPGP-PGPLG--IPGRSGVPGLKGDDGLQGQPG-LPGPTGEKGSKGEPG-LPGP-PGP 954
Query: 231 ISGPN----------PG--PIPGPISGP-----------NPGL-----IPGPIPGPISGP 262
+ PN PG IPG +SGP PGL +PGP PGP P
Sbjct: 955 MD-PNLLGSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNP 1011
Query: 263 G-----PIIGPIPSPAQI-----PGPGRLQG-PGPILSPGRMRSPGSLPGLAPILGPGSG 311
G +IGP I PGP ++G PGP PG+ SPG LPG G
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPG-LPGQK---GDKGD 1067
Query: 312 PGSGSVPAP-IPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
PG S+ P +PGP P P +P +P + D L
Sbjct: 1068 PGISSIGLPGLPGPKGEPG-LPGYPGNPGIKGSVGDPGL 1105
Score = 95.1 bits (235), Expect = 1e-19
Identities = 115/341 (33%), Positives = 138/341 (40%), Gaps = 61/341 (17%)
Query: 33 VPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAA 91
V G +G +G P P S GP G P P + G PG + G
Sbjct: 977 VSGPKGYQGLPGDPGQPGLSGQPGLPGPPG--PKGNPGLPGQPGLIGPPGLKGTIGDMGF 1034
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGS--IPGPI-----PGPAQIPSPIPAPIPGPISGPVQ 144
PGP + P PGP+ +PG PGS +PG PG + I P +PGP G
Sbjct: 1035 --PGPQGVEGP-PGPSGVPGQ-PGSPGLPGQKGDKGDPGISSIGLP---GLPGP-KGEPG 1086
Query: 145 IPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG--PNPGPIPGP--ISGPIPGPI 199
+PG P I G + P +PG P + PG +PG PGP PGP ISGP P
Sbjct: 1087 LPGYPGNPGIKGSVGDPG-LPGLPGTPGAKGQPG-LPGFPGTPGP-PGPKGISGPPGNP- 1142
Query: 200 SVPIPGPIPGPISGPISGPNPGP-----------IPGPI-----PGPISGPNPGP--IPG 241
+PG PGP+ G PGP IPGP PG NPGP +PG
Sbjct: 1143 --GLPGE-PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 242 PISGPNPGLIPG-----PIPGPISGPG----PIIGPIPSPAQIPGP---GRLQGPGPILS 289
G +PG +PGP PG P + P P PGP G PGP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGP 1259
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAP 330
PGR P GL GP PG+G + PG P
Sbjct: 1260 PGRP-GPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLP 1299
Score = 92.4 bits (228), Expect = 7e-19
Identities = 116/362 (32%), Positives = 146/362 (40%), Gaps = 81/362 (22%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PGQ G G++ P +P P GP G P G PG + G+
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPP-GPKGFPGIPGPP--------GAPGTPGRIGL 735
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-----------PIPAPIPG 137
GP P P PGP PG ++PGP PGP +P P P PG
Sbjct: 736 E-----GP-PGPPGFPGPKGEPG---FALPGP-PGPPGLPGFKGALGPKGDRGFPGP-PG 784
Query: 138 P--ISGPVQIPGPFRGPI-----PGPISGPAPIPG-PISGPFSGPN-PGPIPGPNPGPIP 188
P +G +PGP +G + PGP+ GP +PG + GP P PGPI P IP
Sbjct: 785 PPGRTGLDGLPGP-KGDVGPNGQPGPM-GPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 189 GPISGPIPGPISVPIPGP--------IPGPISGPISGPNPGPIPGP-----IPGP----- 230
G PGP + +PGP IPG GPI P +PG PG
Sbjct: 843 GEKGD--PGPPGLDVPGPPGERGSPGIPG-APGPIGPPGSPGLPGKAGASGFPGTKGEMG 899
Query: 231 ISGPNPGPIPGPISGPNPGLIPG-----PIPGPISGPGPIIGPIPSPAQ--IPGPGRLQG 283
+ GP PGP PGP+ P +PG + G PGP G S + +PGP
Sbjct: 900 MMGP-PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGP-TGEKGSKGEPGLPGPPGPMD 956
Query: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF 343
P + S G PG LPG+ + GP G +P PG P P P +
Sbjct: 957 PNLLGSKGEKGEPG-LPGIPGVSGP---KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Query: 344 LP 345
LP
Sbjct: 1013 LP 1014
Score = 91.3 bits (225), Expect = 1e-18
Identities = 126/394 (31%), Positives = 150/394 (38%), Gaps = 99/394 (25%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQ 85
Q P PG G G + P P Q G GI +P L G PG R
Sbjct: 806 QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP-GPPGERGS 864
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPGS-IPGPIPGPAQIPSPIPAPIPGPISGPVQ 144
GIP A PGPI P G +PG S PG G + P PGP GP+
Sbjct: 865 PGIPGA----PGPIGPP--GSPGLPGKAGASGFPGT-KGEMGMMGP-----PGP-PGPLG 911
Query: 145 IPGPFRGPIPG-----PISGPAPIPGPISGPFSGPNPGPIPGPNPGP------------- 186
IPG R +PG + G +PGP S PG +PGP PGP
Sbjct: 912 IPG--RSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPG-LPGP-PGPMDPNLLGSKGEKG 967
Query: 187 ------IPGPISGP-----IPGPISVP-------IPGPIPGPISGPISGPNPGPIPGP-- 226
IPG +SGP +PG P +PGP PGP P PG I P
Sbjct: 968 EPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPGLIGPPGL 1025
Query: 227 --------IPGP--ISGPNPGP--IPGPISGP----------NPGL-------IPGP--- 254
PGP + GP PGP +PG P +PG+ +PGP
Sbjct: 1026 KGTIGDMGFPGPQGVEGP-PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGE 1084
Query: 255 --IPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSG 311
+PG PG I G + P +PG PG G PG +PG PG I GP
Sbjct: 1085 PGLPGYPGNPG-IKGSVGDPG-LPGLPGTPGAKGQPGLPGFPGTPGP-PGPKGISGPPGN 1141
Query: 312 PGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
PG P P+ G G P P + D +P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Score = 86.7 bits (213), Expect = 4e-17
Identities = 133/414 (32%), Positives = 157/414 (37%), Gaps = 137/414 (33%)
Query: 33 VPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAAL 92
VPG G R +P +P A GP G P P + A G PG + + G+
Sbjct: 855 VPGPPGE--RGSPGIPGAP------GPIG--PPGSPGLPGKAGASGFPGTKGEMGMMGP- 903
Query: 93 SPGPGPIPAPIPGPAQIPG-----------PLPG-----------SIPGPIPGP------ 124
PGP P P IPG + +PG LPG +PGP PGP
Sbjct: 904 -PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP-PGPMDPNLL 960
Query: 125 ---AQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPN----PG 177
+ P IPG +SGP G P +SG +PGP GP P PG
Sbjct: 961 GSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPG 1018
Query: 178 PI--------------PGPN-----PGP--IPGPISGP----------IPGPISVPIPGP 206
I PGP PGP +PG P PG S+ +PG
Sbjct: 1019 LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPG- 1077
Query: 207 IPGP--------------ISGPISGPNPGPIPGPIPGPISGPN-------PGPIPGP--I 243
+PGP I G + P +PG PG P PGP PGP I
Sbjct: 1078 LPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGT-PGAKGQPGLPGFPGTPGP-PGPKGI 1135
Query: 244 SGP--NPGLIPGPIPGPISG------PGPIIGPIPSPAQ--IPGPGRLQG---------P 284
SGP NPGL PG PGP+ G PGP G P Q IPGP +G P
Sbjct: 1136 SGPPGNPGL-PGE-PGPVGGGGHPGQPGPP-GEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 285 GPILSPGR--MRSPGSLPGLAP---ILGPGSGPGSGSVPA--PIPGPGSLPAPA 331
GP PG + G LPG+ + GP PG P PGP P PA
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPA 1246
Score = 85.5 bits (210), Expect = 8e-17
Identities = 124/368 (33%), Positives = 146/368 (39%), Gaps = 90/368 (24%)
Query: 33 VPGQRGR-GARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQKGIPA 90
+PG G GA+ P +P + GP GI P P + GG G Q G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Query: 91 ALS-PGPGPIPAPI-------------PGPAQIPGPL----PGSIPGPIPGPAQIPSPIP 132
PG IP P PGP +PG G +PG IPG +P P
Sbjct: 1165 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPG-IPGNPGLPGPKG 1223
Query: 133 AP----IPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGP---IPGPN-- 183
P PG + GP PGP P P + GP PGP GP P P +PGP
Sbjct: 1224 EPGFHGFPG-VQGP---PGPPGSPGPA-LEGPKGNPGP-QGPPGRPGPTGFQGLPGPEGP 1277
Query: 184 PG-PIPGPISGPIPGPISVPIPGPIPGPISGPISGP----NPGP-----------IPGPI 227
PG P G I G P +PG +PG + G P NPG +PG +
Sbjct: 1278 PGLPGNGGIKGEKGNPGQPGLPG-LPG-LKGDQGPPGLQGNPGRPGLNGMKGDPGLPG-V 1334
Query: 228 PGPISGPNPGPIPGPISGPN--PGLI--PGP--IPGP------ISG-------------- 261
PG P +PG +GP PGLI PGP +PGP I G
Sbjct: 1335 PGFPGMKGPSGVPGS-AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLK 1393
Query: 262 --PGPIIGP--IPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGS 316
PGP GP +P P PG PGR PG + GR PG LPG G PG
Sbjct: 1394 GLPGPQ-GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPG-LPGQPGTRGLDGPPGPDG 1451
Query: 317 VPAPIPGP 324
+ P PGP
Sbjct: 1452 LQGP-PGP 1458
Score = 83.6 bits (205), Expect = 3e-16
Identities = 105/320 (32%), Positives = 127/320 (39%), Gaps = 78/320 (24%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI---PGPIPGPAQIPSPIP 132
G PG + +KG A P P PG PG PG I PG ++ SP
Sbjct: 509 GFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA 568
Query: 133 APIPGPISGPVQIPG-PFRGPIPGPISGPAPIPGPIS-----GPFSGPNPGPIPGPNPGP 186
+PG +PG P + +PG + GP PG I+ GP P +PG N GP
Sbjct: 569 PGLPG-------LPGTPGQDGLPG-LPGPKGEPGGITFKGERGPPGNPGLPGLPG-NIGP 619
Query: 187 IPGPISGPIPGPISV---------PIPGPIPGPISGP---ISGPNPGPIPGP-------- 226
+ P GP PGP+ P IPGP P I+ P +PG
Sbjct: 620 MGPPGFGP-PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 227 IPGPISGPNPGPIPG-PISGPNPGL----IPGPIPGPISGPGPIIGPIPSPAQIPG-PGR 280
+PG P +PG P S PG+ +PGP PGP PG IP P PG PGR
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP-PGPKGFPG-----IPGPPGAPGTPGR 732
Query: 281 --LQGP-GPILSPGRMRSPG----------SLPGLAPILGPGSGPGSGSVPAP------- 320
L+GP GP PG PG LPG LGP G P P
Sbjct: 733 IGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLD 792
Query: 321 -IPGP----GSLPAPAPLWP 335
+PGP G P P+ P
Sbjct: 793 GLPGPKGDVGPNGQPGPMGP 812
Score = 77.8 bits (190), Expect = 2e-14
Identities = 89/260 (34%), Positives = 100/260 (38%), Gaps = 42/260 (16%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPG 137
G PG G+P PGP PGP IPGP P P
Sbjct: 51 GFPGLEGHPGLPG------------FPGPEGPPGPRGQKGDDGIPGP---------PGPK 89
Query: 138 PISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIP 196
I GP +PG P +PG + G PGP P G P PG + GP P
Sbjct: 90 GIRGPPGLPGFPGTPGLPG-MPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGP-P 146
Query: 197 GPISVPIPGPIPGP-ISGPISGP--NPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG 253
GP +P PG I + GP NPG PGP PG P P IPGPI P P + G
Sbjct: 147 GPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGP-PGIQGLPGPTGIPGPIGPPGPPGLMG 204
Query: 254 PIPGPISGPGP---IIGPIPSPAQIPGPGRLQG-PGPILSPGRMRSPGSL------PGLA 303
P PGP PGP + P G LQG PGP + P + GL
Sbjct: 205 P-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLP 263
Query: 304 PILGPGSGPGSGSVPAPIPG 323
GP PG P P PG
Sbjct: 264 GDRGPPGPPGIRGPPGP-PG 282
Score = 75.5 bits (184), Expect = 8e-14
Identities = 118/357 (33%), Positives = 139/357 (38%), Gaps = 75/357 (21%)
Query: 25 RLQQQPQRVPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC- 82
R Q+ +PG G +G R P +P + G G A P G PGC
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQ--------GIPGCN 125
Query: 83 --RAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI-PGPIPGPAQIPS-PIPAPIP 136
+ ++G P SPG + P PGP IPG PGSI +PGP P P P I
Sbjct: 126 GTKGERGFPG--SPGFPGLQGP-PGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQ 182
Query: 137 GPISGPVQIPGPFRGPIP----GPISGPAPIPGP-------ISGPFSGPNPGPIPGPNPG 185
G + GP IPGP P P GP GP +PGP GP + GP PG
Sbjct: 183 G-LPGPTGIPGPIGPPGPPGLMGP-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP-PG 239
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISG----------PN 235
P PG IS PI V G + G P P I GP PGP G P
Sbjct: 240 P-PGQISEQ-KRPIDVEFQKGDQG-LPGDRGPPGPPGIRGP-PGPPGGEKGEKGEQGEPG 295
Query: 236 PGPIPGPISGPN--PGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGR- 292
PG G N PG IPG +PG PG P + G+ GP PG
Sbjct: 296 KRGKPGK-DGENGQPG-IPG-LPGDPGYPG-------EPGRDGEKGQKGDTGPPGPPGLV 345
Query: 293 MRSPGS-----------LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSP 338
+ PG+ LPGL G PG P +PGP P A + P P
Sbjct: 346 IPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGP---PGAAVMGPPGP 398
Score = 68.9 bits (167), Expect = 8e-12
Identities = 111/369 (30%), Positives = 136/369 (36%), Gaps = 115/369 (31%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PG++G G + P +P +A GP G G PG R QKG
Sbjct: 366 LPGEKGERGFPGIQGPPGLPGPPGAAVM-GPPG--------------PPGFPGERGQKG- 409
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGS--IPGPIPGPA--QIPSPIPAPIPGPISGPVQ 144
GP IPGP + G PG+ +PGP PGPA IP PGP
Sbjct: 410 ------DEGPPGISIPGPPGLDGQ-PGAPGLPGP-PGPAGPHIPPSDEICEPGP------ 455
Query: 145 IPGPFRGPIPGPISGPAPIPGP------------ISGPFSGPNPGPIPGPNPGPIPGP-- 190
PGP P + G + G ISGP P +PGP PG + P
Sbjct: 456 -PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQ 513
Query: 191 --------ISGP-----IPGPISVP-IPGPI--PGPI---------SGPISGPNPGPIPG 225
+GP IPG P PG PG I G + P +PG
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG 573
Query: 226 PIPGPISGPNPGPIPGPISGP-------------NPGL--IPGPIPGPISGPGPIIGPIP 270
+PG +PGP P NPGL +PG I GP+ PG GP P
Sbjct: 574 -LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GPMGPPG--FGP-P 628
Query: 271 SPAQIPG-------PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP--- 320
P G PG+ PGP PG+ + PGL PG+ G V P
Sbjct: 629 GPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGL-----PGNPGRDGDVGLPGDP 683
Query: 321 -IPGPGSLP 328
+PG LP
Sbjct: 684 GLPGQPGLP 692
Score = 67.0 bits (162), Expect = 3e-11
Identities = 93/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQ-----------IPGPLPGS-----IPGPI 121
G PG +KG P PGP IP P +PG LPG PG I
Sbjct: 322 GEPGRDGEKGQKGDTGP-PGPPGLVIPRPGTGITIGEKGNIGLPG-LPGEKGERGFPG-I 378
Query: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG 181
GP +P P A + GP GP PG RG IPGP G P +PG
Sbjct: 379 QGPPGLPGPPGAAVMGP-PGPPGFPGE-RGQKGDEGPPGISIPGP-PGLDGQPGAPGLPG 435
Query: 182 PNPGPIPGPISGPIPGPISVPIPGPIPGPISGP----------ISGPNPGPIPGPIPGPI 231
P PGP IP + PGP PGP P + G I I
Sbjct: 436 P-----PGPAGPHIPPSDEICEPGP-PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGI 489
Query: 232 SGPNPGP-IPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILS 289
SGP P +PG + GP PG + P G GP P IPG PG PG
Sbjct: 490 SGPPGQPGLPG-LPGP-PGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGE 546
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPA-PAP 332
PG + + + G LG PG +P PG LP P P
Sbjct: 547 PGDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGP 589
Score = 65.1 bits (157), Expect = 1e-10
Identities = 116/375 (30%), Positives = 137/375 (36%), Gaps = 110/375 (29%)
Query: 27 QQQPQRVPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC 82
Q+ Q +PG RG G R P P ++G G EP G PG
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKG--EKGEQG-----EPG------KRGKPGK 302
Query: 83 RAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPG--------SIPGPIPGPAQIPSPIPAP 134
+ G P PG +PG PG PG GP PGP + P P
Sbjct: 303 DGENGQPGI----PG-----LPGDPGYPGE-PGRDGEKGQKGDTGP-PGPPGLVIPRPGT 351
Query: 135 -IPGPISGPVQIPGPFRGPIPGP--------ISGPAPIPGPISGPFSGPNPGPIPGPNPG 185
I G + +PG +PG I GP +PGP GP PGP P
Sbjct: 352 GITIGEKGNIGLPG-----LPGEKGERGFPGIQGPPGLPGPPGAAVMGP-PGPPGFPGER 405
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGP-ISGPNPGPI------------PGPIPGPIS 232
G GP PG IS+P P + G P + GP PGP PGP PGP
Sbjct: 406 GQKGD-EGP-PG-ISIPGPPGLDGQPGAPGLPGP-PGPAGPHIPPSDEICEPGP-PGPPG 460
Query: 233 GPNPGPIPGP------------------ISGP--NPGL--IPGPIPGPISGPGP------ 264
P + G ISGP PGL +PGP PG + PG
Sbjct: 461 SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQKGEKGQ 519
Query: 265 --IIGP-----IPSPAQIPG-PGRLQGPGPILS-PGRMRSPGSL--PGLAPILGPGSGPG 313
GP IP PG PG PG IL+ PG G L PG + G PG
Sbjct: 520 AGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG 579
Query: 314 SGSVPAPIPGPGSLP 328
+P +PGP P
Sbjct: 580 QDGLPG-LPGPKGEP 593
Score = 53.5 bits (127), Expect = 3e-07
Identities = 61/180 (33%), Positives = 65/180 (36%), Gaps = 30/180 (16%)
Query: 176 PGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGP--IPGPISG 233
PG P PGP GP PGP IPGP P P I GP +PG
Sbjct: 53 PGLEGHPGLPGFPGP-EGP-PGPRGQKGDDGIPGP-------PGPKGIRGPPGLPGFPGT 103
Query: 234 PNPGPIPGPISGPNPGLIPG--PIPGPISGPGPIIGPIPSPAQIPGPGRLQGP-GPILSP 290
P +PG P P IPG G PG PG LQGP GP P
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-----------PGFPGLQGPPGPPGIP 152
Query: 291 GRMRSPGS-----LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
G PGS LPG G PG +P P PG + P P P LP
Sbjct: 153 GMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLP 212
Score = 50.8 bits (120), Expect = 2e-06
Identities = 65/210 (30%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 30 PQRVPGQRG----RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQ 85
P +PG G +G P +P +GP G+ P L+ G PG
Sbjct: 1277 PPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL--QGNPGRPGLNGMKGDPGLPGV 1334
Query: 86 KGIPAALSP-------GPGPIPAPI--PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP 136
G P P GP P I PGP +PGP SI I G A
Sbjct: 1335 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI--IIKGDA----------- 1381
Query: 137 GPISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG--------PNPGPI 187
GP IPG P +PGP GP +PGP +GP P +PG +PG +
Sbjct: 1382 ----GPPGIPGQPGLKGLPGP-QGPQGLPGP-TGPPGDPGRNGLPGFDGAGGRKGDPG-L 1434
Query: 188 PGP-----ISGPIPGPISVPIPGPIPGPIS 212
PG + GP PGP + P PG S
Sbjct: 1435 PGQPGTRGLDGP-PGPDGLQGPPGPPGTSS 1463
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 99.8 bits (247), Expect = 4e-21
Identities = 138/399 (34%), Positives = 158/399 (39%), Gaps = 95/399 (23%)
Query: 30 PQRVPGQRGR-GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
P PG GR G P P + G + P P + A G G R G
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 89 PA-----ALSPGPGPI----PAPIPGPAQIPGPLPG-SIPGPIPGPAQIPSPIPAPIPGP 138
P L PGP P PGP PG LPG + GP PGP IP PI P
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGP-PGPPGIPGPIGQPGLHG 840
Query: 139 ISGPVQIPGPFRGPIPGP-----ISGPAPIPGPISGPFSGPNPGP-----IPGPN----- 183
I G PGP +PGP G PGPI P S PG PG
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 184 ---PGPIPGPISGPIPGPISVP----------IPGPIPGPISGPISGPNPGPIPGPIPGP 230
PGP PGP+ IPG VP PG +PGP S PG +PGP PGP
Sbjct: 901 MGPPGP-PGPLG--IPGRSGVPGLKGDDGLQGQPG-LPGPTGEKGSKGEPG-LPGP-PGP 954
Query: 231 ISGPN----------PG--PIPGPISGP-----------NPGL-----IPGPIPGPISGP 262
+ PN PG IPG +SGP PGL +PGP PGP P
Sbjct: 955 MD-PNLLGSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNP 1011
Query: 263 G-----PIIGPIPSPAQI-----PGPGRLQG-PGPILSPGRMRSPGSLPGLAPILGPGSG 311
G +IGP I PGP ++G PGP PG+ SPG LPG G
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPG-LPGQK---GDKGD 1067
Query: 312 PGSGSVPAP-IPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
PG S+ P +PGP P P +P +P + D L
Sbjct: 1068 PGISSIGLPGLPGPKGEPG-LPGYPGNPGIKGSVGDPGL 1105
Score = 95.5 bits (236), Expect = 8e-20
Identities = 116/336 (34%), Positives = 138/336 (41%), Gaps = 57/336 (16%)
Query: 33 VPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAA 91
V G +G +G P P S GP G P P + G PG + G
Sbjct: 977 VSGPKGYQGLPGDPGQPGLSGQPGLPGPPG--PKGNPGLPGQPGLIGPPGLKGTIGDMGF 1034
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGS--IPGPI-----PGPAQIPSPIPAPIPGPISGPVQ 144
PGP + P PGP+ +PG PGS +PG PG + I P +PGP G
Sbjct: 1035 --PGPQGVEGP-PGPSGVPGQ-PGSPGLPGQKGDKGDPGISSIGLP---GLPGP-KGEPG 1086
Query: 145 IPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG--PNPGPIPGP--ISGPIPGPI 199
+PG P I G + P +PG P + PG +PG PGP PGP ISGP P
Sbjct: 1087 LPGYPGNPGIKGSVGDPG-LPGLPGTPGAKGQPG-LPGFPGTPGP-PGPKGISGPPGNP- 1142
Query: 200 SVPIPGPIPGPISGPISGPNPGP-----------IPGPI-----PGPISGPNPGP--IPG 241
+PG PGP+ G PGP IPGP PG NPGP +PG
Sbjct: 1143 --GLPGE-PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 242 PISGPNPGLIPGPIPGPISGPGPIIGP----IPSPAQIPGPGRLQGP---GPILSPGRMR 294
G +PG IPG PGP P P PGP GP GP +PG
Sbjct: 1200 LSGQKGDGGLPG-IPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQG 1258
Query: 295 SPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAP 330
PG PGL GP PG+G + PG P
Sbjct: 1259 PPGR-PGLPGPEGPPGLPGNGGIKGEKGNPGQPGLP 1293
Score = 92.4 bits (228), Expect = 7e-19
Identities = 116/362 (32%), Positives = 146/362 (40%), Gaps = 81/362 (22%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PGQ G G++ P +P P GP G P G PG + G+
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPP-GPKGFPGIPGPP--------GAPGTPGRIGL 735
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-----------PIPAPIPG 137
GP P P PGP PG ++PGP PGP +P P P PG
Sbjct: 736 E-----GP-PGPPGFPGPKGEPG---FALPGP-PGPPGLPGFKGALGPKGDRGFPGP-PG 784
Query: 138 P--ISGPVQIPGPFRGPI-----PGPISGPAPIPG-PISGPFSGPN-PGPIPGPNPGPIP 188
P +G +PGP +G + PGP+ GP +PG + GP P PGPI P IP
Sbjct: 785 PPGRTGLDGLPGP-KGDVGPNGQPGPM-GPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 189 GPISGPIPGPISVPIPGP--------IPGPISGPISGPNPGPIPGP-----IPGP----- 230
G PGP + +PGP IPG GPI P +PG PG
Sbjct: 843 GEKGD--PGPPGLDVPGPPGERGSPGIPG-APGPIGPPGSPGLPGKAGASGFPGTKGEMG 899
Query: 231 ISGPNPGPIPGPISGPNPGLIPG-----PIPGPISGPGPIIGPIPSPAQ--IPGPGRLQG 283
+ GP PGP PGP+ P +PG + G PGP G S + +PGP
Sbjct: 900 MMGP-PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGP-TGEKGSKGEPGLPGPPGPMD 956
Query: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF 343
P + S G PG LPG+ + GP G +P PG P P P +
Sbjct: 957 PNLLGSKGEKGEPG-LPGIPGVSGP---KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Query: 344 LP 345
LP
Sbjct: 1013 LP 1014
Score = 91.3 bits (225), Expect = 1e-18
Identities = 126/394 (31%), Positives = 150/394 (38%), Gaps = 99/394 (25%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQ 85
Q P PG G G + P P Q G GI +P L G PG R
Sbjct: 806 QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP-GPPGERGS 864
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPGS-IPGPIPGPAQIPSPIPAPIPGPISGPVQ 144
GIP A PGPI P G +PG S PG G + P PGP GP+
Sbjct: 865 PGIPGA----PGPIGPP--GSPGLPGKAGASGFPGT-KGEMGMMGP-----PGP-PGPLG 911
Query: 145 IPGPFRGPIPG-----PISGPAPIPGPISGPFSGPNPGPIPGPNPGP------------- 186
IPG R +PG + G +PGP S PG +PGP PGP
Sbjct: 912 IPG--RSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPG-LPGP-PGPMDPNLLGSKGEKG 967
Query: 187 ------IPGPISGP-----IPGPISVP-------IPGPIPGPISGPISGPNPGPIPGP-- 226
IPG +SGP +PG P +PGP PGP P PG I P
Sbjct: 968 EPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPGLIGPPGL 1025
Query: 227 --------IPGP--ISGPNPGP--IPGPISGP----------NPGL-------IPGP--- 254
PGP + GP PGP +PG P +PG+ +PGP
Sbjct: 1026 KGTIGDMGFPGPQGVEGP-PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGE 1084
Query: 255 --IPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSG 311
+PG PG I G + P +PG PG G PG +PG PG I GP
Sbjct: 1085 PGLPGYPGNPG-IKGSVGDPG-LPGLPGTPGAKGQPGLPGFPGTPGP-PGPKGISGPPGN 1141
Query: 312 PGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
PG P P+ G G P P + D +P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Score = 87.0 bits (214), Expect = 3e-17
Identities = 123/362 (33%), Positives = 144/362 (39%), Gaps = 84/362 (23%)
Query: 33 VPGQRGR-GARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQKGIPA 90
+PG G GA+ P +P + GP GI P P + GG G Q G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Query: 91 ALS-PGPGPIPAPI-------------PGPAQIPG--------PLPGSIPGP--IPGPAQ 126
PG IP P PGP +PG LPG IPG +PGP
Sbjct: 1165 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPG-IPGNPGLPGPKG 1223
Query: 127 IPS----------PIPAPIPGP-ISGPVQIPGPFRGP-----IPGPISGPAPIPGP--IS 168
P P P PGP + GP PGP +GP +PGP GP +PG I
Sbjct: 1224 EPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP-QGPPGRPGLPGP-EGPPGLPGNGGIK 1281
Query: 169 GPFSGPNPGPIPG--------------PNPGPIPGPISGPIPGPISVPIPGPIPGPISGP 214
G P +PG NPG PG ++G P +PG PG + GP
Sbjct: 1282 GEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR-PG-LNGMKGDPGLPGVPG-FPG-MKGP 1337
Query: 215 ISGPNPGPIPGPIPGPISGPNPGPIPGPI---------SGPNPGLIPGPIPGPISGPGPI 265
P G PG I P P +PGP +GP PG IPG PG PGP
Sbjct: 1338 SGVPGSAGPEGE-PGLIGPPGPPGLPGPSGQSIIIKGDAGP-PG-IPGQ-PGLKGLPGPQ 1393
Query: 266 IGP--IPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIP 322
GP +P P PG PGR PG + GR PG LPG G PG + P P
Sbjct: 1394 -GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPG-LPGQPGTRGLDGPPGPDGLQGP-P 1450
Query: 323 GP 324
GP
Sbjct: 1451 GP 1452
Score = 86.7 bits (213), Expect = 4e-17
Identities = 133/414 (32%), Positives = 157/414 (37%), Gaps = 137/414 (33%)
Query: 33 VPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAAL 92
VPG G R +P +P A GP G P P + A G PG + + G+
Sbjct: 855 VPGPPGE--RGSPGIPGAP------GPIG--PPGSPGLPGKAGASGFPGTKGEMGMMGP- 903
Query: 93 SPGPGPIPAPIPGPAQIPG-----------PLPG-----------SIPGPIPGP------ 124
PGP P P IPG + +PG LPG +PGP PGP
Sbjct: 904 -PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP-PGPMDPNLL 960
Query: 125 ---AQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPN----PG 177
+ P IPG +SGP G P +SG +PGP GP P PG
Sbjct: 961 GSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPG 1018
Query: 178 PI--------------PGPN-----PGP--IPGPISGP----------IPGPISVPIPGP 206
I PGP PGP +PG P PG S+ +PG
Sbjct: 1019 LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPG- 1077
Query: 207 IPGP--------------ISGPISGPNPGPIPGPIPGPISGPN-------PGPIPGP--I 243
+PGP I G + P +PG PG P PGP PGP I
Sbjct: 1078 LPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGT-PGAKGQPGLPGFPGTPGP-PGPKGI 1135
Query: 244 SGP--NPGLIPGPIPGPISG------PGPIIGPIPSPAQ--IPGPGRLQG---------P 284
SGP NPGL PG PGP+ G PGP G P Q IPGP +G P
Sbjct: 1136 SGPPGNPGL-PGE-PGPVGGGGHPGQPGPP-GEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 285 GPILSPGR--MRSPGSLPGLAP---ILGPGSGPGSGSVPA--PIPGPGSLPAPA 331
GP PG + G LPG+ + GP PG P PGP P PA
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPA 1246
Score = 83.6 bits (205), Expect = 3e-16
Identities = 105/320 (32%), Positives = 127/320 (39%), Gaps = 78/320 (24%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI---PGPIPGPAQIPSPIP 132
G PG + +KG A P P PG PG PG I PG ++ SP
Sbjct: 509 GFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA 568
Query: 133 APIPGPISGPVQIPG-PFRGPIPGPISGPAPIPGPIS-----GPFSGPNPGPIPGPNPGP 186
+PG +PG P + +PG + GP PG I+ GP P +PG N GP
Sbjct: 569 PGLPG-------LPGTPGQDGLPG-LPGPKGEPGGITFKGERGPPGNPGLPGLPG-NIGP 619
Query: 187 IPGPISGPIPGPISV---------PIPGPIPGPISGP---ISGPNPGPIPGP-------- 226
+ P GP PGP+ P IPGP P I+ P +PG
Sbjct: 620 MGPPGFGP-PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 227 IPGPISGPNPGPIPG-PISGPNPGL----IPGPIPGPISGPGPIIGPIPSPAQIPG-PGR 280
+PG P +PG P S PG+ +PGP PGP PG IP P PG PGR
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP-PGPKGFPG-----IPGPPGAPGTPGR 732
Query: 281 --LQGP-GPILSPGRMRSPG----------SLPGLAPILGPGSGPGSGSVPAP------- 320
L+GP GP PG PG LPG LGP G P P
Sbjct: 733 IGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLD 792
Query: 321 -IPGP----GSLPAPAPLWP 335
+PGP G P P+ P
Sbjct: 793 GLPGPKGDVGPNGQPGPMGP 812
Score = 77.8 bits (190), Expect = 2e-14
Identities = 89/260 (34%), Positives = 100/260 (38%), Gaps = 42/260 (16%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPG 137
G PG G+P PGP PGP IPGP P P
Sbjct: 51 GFPGLEGHPGLPG------------FPGPEGPPGPRGQKGDDGIPGP---------PGPK 89
Query: 138 PISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIP 196
I GP +PG P +PG + G PGP P G P PG + GP P
Sbjct: 90 GIRGPPGLPGFPGTPGLPG-MPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGP-P 146
Query: 197 GPISVPIPGPIPGP-ISGPISGP--NPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG 253
GP +P PG I + GP NPG PGP PG P P IPGPI P P + G
Sbjct: 147 GPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGP-PGIQGLPGPTGIPGPIGPPGPPGLMG 204
Query: 254 PIPGPISGPGP---IIGPIPSPAQIPGPGRLQG-PGPILSPGRMRSPGSL------PGLA 303
P PGP PGP + P G LQG PGP + P + GL
Sbjct: 205 P-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLP 263
Query: 304 PILGPGSGPGSGSVPAPIPG 323
GP PG P P PG
Sbjct: 264 GDRGPPGPPGIRGPPGP-PG 282
Score = 75.5 bits (184), Expect = 8e-14
Identities = 118/357 (33%), Positives = 139/357 (38%), Gaps = 75/357 (21%)
Query: 25 RLQQQPQRVPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC- 82
R Q+ +PG G +G R P +P + G G A P G PGC
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQ--------GIPGCN 125
Query: 83 --RAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI-PGPIPGPAQIPS-PIPAPIP 136
+ ++G P SPG + P PGP IPG PGSI +PGP P P P I
Sbjct: 126 GTKGERGFPG--SPGFPGLQGP-PGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQ 182
Query: 137 GPISGPVQIPGPFRGPIP----GPISGPAPIPGP-------ISGPFSGPNPGPIPGPNPG 185
G + GP IPGP P P GP GP +PGP GP + GP PG
Sbjct: 183 G-LPGPTGIPGPIGPPGPPGLMGP-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP-PG 239
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISG----------PN 235
P PG IS PI V G + G P P I GP PGP G P
Sbjct: 240 P-PGQISEQ-KRPIDVEFQKGDQG-LPGDRGPPGPPGIRGP-PGPPGGEKGEKGEQGEPG 295
Query: 236 PGPIPGPISGPN--PGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGR- 292
PG G N PG IPG +PG PG P + G+ GP PG
Sbjct: 296 KRGKPGK-DGENGQPG-IPG-LPGDPGYPG-------EPGRDGEKGQKGDTGPPGPPGLV 345
Query: 293 MRSPGS-----------LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSP 338
+ PG+ LPGL G PG P +PGP P A + P P
Sbjct: 346 IPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGP---PGAAVMGPPGP 398
Score = 68.9 bits (167), Expect = 8e-12
Identities = 111/369 (30%), Positives = 136/369 (36%), Gaps = 115/369 (31%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PG++G G + P +P +A GP G G PG R QKG
Sbjct: 366 LPGEKGERGFPGIQGPPGLPGPPGAAVM-GPPG--------------PPGFPGERGQKG- 409
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGS--IPGPIPGPA--QIPSPIPAPIPGPISGPVQ 144
GP IPGP + G PG+ +PGP PGPA IP PGP
Sbjct: 410 ------DEGPPGISIPGPPGLDGQ-PGAPGLPGP-PGPAGPHIPPSDEICEPGP------ 455
Query: 145 IPGPFRGPIPGPISGPAPIPGP------------ISGPFSGPNPGPIPGPNPGPIPGP-- 190
PGP P + G + G ISGP P +PGP PG + P
Sbjct: 456 -PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQ 513
Query: 191 --------ISGP-----IPGPISVP-IPGPI--PGPI---------SGPISGPNPGPIPG 225
+GP IPG P PG PG I G + P +PG
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG 573
Query: 226 PIPGPISGPNPGPIPGPISGP-------------NPGL--IPGPIPGPISGPGPIIGPIP 270
+PG +PGP P NPGL +PG I GP+ PG GP P
Sbjct: 574 -LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GPMGPPG--FGP-P 628
Query: 271 SPAQIPG-------PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP--- 320
P G PG+ PGP PG+ + PGL PG+ G V P
Sbjct: 629 GPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGL-----PGNPGRDGDVGLPGDP 683
Query: 321 -IPGPGSLP 328
+PG LP
Sbjct: 684 GLPGQPGLP 692
Score = 67.0 bits (162), Expect = 3e-11
Identities = 93/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQ-----------IPGPLPGS-----IPGPI 121
G PG +KG P PGP IP P +PG LPG PG I
Sbjct: 322 GEPGRDGEKGQKGDTGP-PGPPGLVIPRPGTGITIGEKGNIGLPG-LPGEKGERGFPG-I 378
Query: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG 181
GP +P P A + GP GP PG RG IPGP G P +PG
Sbjct: 379 QGPPGLPGPPGAAVMGP-PGPPGFPGE-RGQKGDEGPPGISIPGP-PGLDGQPGAPGLPG 435
Query: 182 PNPGPIPGPISGPIPGPISVPIPGPIPGPISGP----------ISGPNPGPIPGPIPGPI 231
P PGP IP + PGP PGP P + G I I
Sbjct: 436 P-----PGPAGPHIPPSDEICEPGP-PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGI 489
Query: 232 SGPNPGP-IPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILS 289
SGP P +PG + GP PG + P G GP P IPG PG PG
Sbjct: 490 SGPPGQPGLPG-LPGP-PGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGE 546
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPA-PAP 332
PG + + + G LG PG +P PG LP P P
Sbjct: 547 PGDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGP 589
Score = 65.1 bits (157), Expect = 1e-10
Identities = 116/375 (30%), Positives = 137/375 (36%), Gaps = 110/375 (29%)
Query: 27 QQQPQRVPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC 82
Q+ Q +PG RG G R P P ++G G EP G PG
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKG--EKGEQG-----EPG------KRGKPGK 302
Query: 83 RAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPG--------SIPGPIPGPAQIPSPIPAP 134
+ G P PG +PG PG PG GP PGP + P P
Sbjct: 303 DGENGQPGI----PG-----LPGDPGYPGE-PGRDGEKGQKGDTGP-PGPPGLVIPRPGT 351
Query: 135 -IPGPISGPVQIPGPFRGPIPGP--------ISGPAPIPGPISGPFSGPNPGPIPGPNPG 185
I G + +PG +PG I GP +PGP GP PGP P
Sbjct: 352 GITIGEKGNIGLPG-----LPGEKGERGFPGIQGPPGLPGPPGAAVMGP-PGPPGFPGER 405
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGP-ISGPNPGPI------------PGPIPGPIS 232
G GP PG IS+P P + G P + GP PGP PGP PGP
Sbjct: 406 GQKGD-EGP-PG-ISIPGPPGLDGQPGAPGLPGP-PGPAGPHIPPSDEICEPGP-PGPPG 460
Query: 233 GPNPGPIPGP------------------ISGP--NPGL--IPGPIPGPISGPGP------ 264
P + G ISGP PGL +PGP PG + PG
Sbjct: 461 SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQKGEKGQ 519
Query: 265 --IIGP-----IPSPAQIPG-PGRLQGPGPILS-PGRMRSPGSL--PGLAPILGPGSGPG 313
GP IP PG PG PG IL+ PG G L PG + G PG
Sbjct: 520 AGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG 579
Query: 314 SGSVPAPIPGPGSLP 328
+P +PGP P
Sbjct: 580 QDGLPG-LPGPKGEP 593
Score = 53.5 bits (127), Expect = 3e-07
Identities = 61/180 (33%), Positives = 65/180 (36%), Gaps = 30/180 (16%)
Query: 176 PGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGP--IPGPISG 233
PG P PGP GP PGP IPGP P P I GP +PG
Sbjct: 53 PGLEGHPGLPGFPGP-EGP-PGPRGQKGDDGIPGP-------PGPKGIRGPPGLPGFPGT 103
Query: 234 PNPGPIPGPISGPNPGLIPG--PIPGPISGPGPIIGPIPSPAQIPGPGRLQGP-GPILSP 290
P +PG P P IPG G PG PG LQGP GP P
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-----------PGFPGLQGPPGPPGIP 152
Query: 291 GRMRSPGS-----LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
G PGS LPG G PG +P P PG + P P P LP
Sbjct: 153 GMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLP 212
Score = 50.8 bits (120), Expect = 2e-06
Identities = 65/210 (30%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 30 PQRVPGQRG----RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQ 85
P +PG G +G P +P +GP G+ P L+ G PG
Sbjct: 1271 PPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL--QGNPGRPGLNGMKGDPGLPGV 1328
Query: 86 KGIPAALSP-------GPGPIPAPI--PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP 136
G P P GP P I PGP +PGP SI I G A
Sbjct: 1329 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI--IIKGDA----------- 1375
Query: 137 GPISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG--------PNPGPI 187
GP IPG P +PGP GP +PGP +GP P +PG +PG +
Sbjct: 1376 ----GPPGIPGQPGLKGLPGP-QGPQGLPGP-TGPPGDPGRNGLPGFDGAGGRKGDPG-L 1428
Query: 188 PGP-----ISGPIPGPISVPIPGPIPGPIS 212
PG + GP PGP + P PG S
Sbjct: 1429 PGQPGTRGLDGP-PGPDGLQGPPGPPGTSS 1457
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 99.8 bits (247), Expect = 4e-21
Identities = 138/399 (34%), Positives = 158/399 (39%), Gaps = 95/399 (23%)
Query: 30 PQRVPGQRGR-GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
P PG GR G P P + G + P P + A G G R G
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 89 PA-----ALSPGPGPI----PAPIPGPAQIPGPLPG-SIPGPIPGPAQIPSPIPAPIPGP 138
P L PGP P PGP PG LPG + GP PGP IP PI P
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGP-PGPPGIPGPIGQPGLHG 840
Query: 139 ISGPVQIPGPFRGPIPGP-----ISGPAPIPGPISGPFSGPNPGP-----IPGPN----- 183
I G PGP +PGP G PGPI P S PG PG
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 184 ---PGPIPGPISGPIPGPISVP----------IPGPIPGPISGPISGPNPGPIPGPIPGP 230
PGP PGP+ IPG VP PG +PGP S PG +PGP PGP
Sbjct: 901 MGPPGP-PGPLG--IPGRSGVPGLKGDDGLQGQPG-LPGPTGEKGSKGEPG-LPGP-PGP 954
Query: 231 ISGPN----------PG--PIPGPISGP-----------NPGL-----IPGPIPGPISGP 262
+ PN PG IPG +SGP PGL +PGP PGP P
Sbjct: 955 MD-PNLLGSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNP 1011
Query: 263 G-----PIIGPIPSPAQI-----PGPGRLQG-PGPILSPGRMRSPGSLPGLAPILGPGSG 311
G +IGP I PGP ++G PGP PG+ SPG LPG G
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPG-LPGQK---GDKGD 1067
Query: 312 PGSGSVPAP-IPGPGSLPAPAPLWPQSPDASDFLPDTQL 349
PG S+ P +PGP P P +P +P + D L
Sbjct: 1068 PGISSIGLPGLPGPKGEPG-LPGYPGNPGIKGSVGDPGL 1105
Score = 92.4 bits (228), Expect = 7e-19
Identities = 116/362 (32%), Positives = 146/362 (40%), Gaps = 81/362 (22%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PGQ G G++ P +P P GP G P G PG + G+
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPP-GPKGFPGIPGPP--------GAPGTPGRIGL 735
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-----------PIPAPIPG 137
GP P P PGP PG ++PGP PGP +P P P PG
Sbjct: 736 E-----GP-PGPPGFPGPKGEPG---FALPGP-PGPPGLPGFKGALGPKGDRGFPGP-PG 784
Query: 138 P--ISGPVQIPGPFRGPI-----PGPISGPAPIPG-PISGPFSGPN-PGPIPGPNPGPIP 188
P +G +PGP +G + PGP+ GP +PG + GP P PGPI P IP
Sbjct: 785 PPGRTGLDGLPGP-KGDVGPNGQPGPM-GPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 189 GPISGPIPGPISVPIPGP--------IPGPISGPISGPNPGPIPGP-----IPGP----- 230
G PGP + +PGP IPG GPI P +PG PG
Sbjct: 843 GEKGD--PGPPGLDVPGPPGERGSPGIPG-APGPIGPPGSPGLPGKAGASGFPGTKGEMG 899
Query: 231 ISGPNPGPIPGPISGPNPGLIPG-----PIPGPISGPGPIIGPIPSPAQ--IPGPGRLQG 283
+ GP PGP PGP+ P +PG + G PGP G S + +PGP
Sbjct: 900 MMGP-PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGP-TGEKGSKGEPGLPGPPGPMD 956
Query: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDF 343
P + S G PG LPG+ + GP G +P PG P P P +
Sbjct: 957 PNLLGSKGEKGEPG-LPGIPGVSGP---KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Query: 344 LP 345
LP
Sbjct: 1013 LP 1014
Score = 91.3 bits (225), Expect = 1e-18
Identities = 126/394 (31%), Positives = 150/394 (38%), Gaps = 99/394 (25%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQ 85
Q P PG G G + P P Q G GI +P L G PG R
Sbjct: 806 QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP-GPPGERGS 864
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPGS-IPGPIPGPAQIPSPIPAPIPGPISGPVQ 144
GIP A PGPI P G +PG S PG G + P PGP GP+
Sbjct: 865 PGIPGA----PGPIGPP--GSPGLPGKAGASGFPGT-KGEMGMMGP-----PGP-PGPLG 911
Query: 145 IPGPFRGPIPG-----PISGPAPIPGPISGPFSGPNPGPIPGPNPGP------------- 186
IPG R +PG + G +PGP S PG +PGP PGP
Sbjct: 912 IPG--RSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPG-LPGP-PGPMDPNLLGSKGEKG 967
Query: 187 ------IPGPISGP-----IPGPISVP-------IPGPIPGPISGPISGPNPGPIPGP-- 226
IPG +SGP +PG P +PGP PGP P PG I P
Sbjct: 968 EPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPGLIGPPGL 1025
Query: 227 --------IPGP--ISGPNPGP--IPGPISGP----------NPGL-------IPGP--- 254
PGP + GP PGP +PG P +PG+ +PGP
Sbjct: 1026 KGTIGDMGFPGPQGVEGP-PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGE 1084
Query: 255 --IPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSG 311
+PG PG I G + P +PG PG G PG +PG PG I GP
Sbjct: 1085 PGLPGYPGNPG-IKGSVGDPG-LPGLPGTPGAKGQPGLPGFPGTPGP-PGPKGISGPPGN 1141
Query: 312 PGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
PG P P+ G G P P + D +P
Sbjct: 1142 PGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Score = 89.4 bits (220), Expect = 6e-18
Identities = 121/342 (35%), Positives = 142/342 (41%), Gaps = 50/342 (14%)
Query: 30 PQRVPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
PQ V G G G P P +G GI P + G PG GI
Sbjct: 1037 PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGI 1096
Query: 89 PAALS-PGPGPIPAPIPGPAQIPGPLPG--SIPGPIPGPAQIPSPIPAP----IPGPISG 141
++ PG +P PG PG LPG PGP PGP I P P PGP+ G
Sbjct: 1097 KGSVGDPGLPGLPGT-PGAKGQPG-LPGFPGTPGP-PGPKGISGPPGNPGLPGEPGPVGG 1153
Query: 142 ---PVQIPGPFRGPIPGP--ISGPAPIPGPISGP-FSGPNPGPIPGPNPGPIPGPISGPI 195
P Q P PG I GPA G P F P P +PG + G + G I
Sbjct: 1154 GGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPG-I 1212
Query: 196 PGPISVPIPGPIPGPISGP-ISGPNPGPIPGPIPGP-ISGP--NPGPIPGPISGPNPGL- 250
PG +P P PG P + GP PGP PG PGP + GP NPGP P PG
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGP-PGP-PGS-PGPALEGPKGNPGPQGPP---GRPGFQ 1266
Query: 251 -IPGPI-PGPISGPGPIIGPIPSPAQ--IPGPGRLQG----PGPILSPGR------MRSP 296
+PGP P + G G I G +P Q +PG L+G PG +PGR P
Sbjct: 1267 GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDP 1326
Query: 297 G--SLPGLAPILGPGSGPGSG---SVPAPI--PGPGSLPAPA 331
G +PG + GP PGS P I PGP LP P+
Sbjct: 1327 GLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPS 1368
Score = 86.7 bits (213), Expect = 4e-17
Identities = 133/414 (32%), Positives = 157/414 (37%), Gaps = 137/414 (33%)
Query: 33 VPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAAL 92
VPG G R +P +P A GP G P P + A G PG + + G+
Sbjct: 855 VPGPPGE--RGSPGIPGAP------GPIG--PPGSPGLPGKAGASGFPGTKGEMGMMGP- 903
Query: 93 SPGPGPIPAPIPGPAQIPG-----------PLPG-----------SIPGPIPGP------ 124
PGP P P IPG + +PG LPG +PGP PGP
Sbjct: 904 -PGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP-PGPMDPNLL 960
Query: 125 ---AQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPN----PG 177
+ P IPG +SGP G P +SG +PGP GP P PG
Sbjct: 961 GSKGEKGEPGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGP-PGPKGNPGLPGQPG 1018
Query: 178 PI--------------PGPN-----PGP--IPGPISGP----------IPGPISVPIPGP 206
I PGP PGP +PG P PG S+ +PG
Sbjct: 1019 LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPG- 1077
Query: 207 IPGP--------------ISGPISGPNPGPIPGPIPGPISGPN-------PGPIPGP--I 243
+PGP I G + P +PG PG P PGP PGP I
Sbjct: 1078 LPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGT-PGAKGQPGLPGFPGTPGP-PGPKGI 1135
Query: 244 SGP--NPGLIPGPIPGPISG------PGPIIGPIPSPAQ--IPGPGRLQG---------P 284
SGP NPGL PG PGP+ G PGP G P Q IPGP +G P
Sbjct: 1136 SGPPGNPGL-PGE-PGPVGGGGHPGQPGPP-GEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 285 GPILSPGR--MRSPGSLPGLAP---ILGPGSGPGSGSVPA--PIPGPGSLPAPA 331
GP PG + G LPG+ + GP PG P PGP P PA
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPA 1246
Score = 86.7 bits (213), Expect = 4e-17
Identities = 123/365 (33%), Positives = 145/365 (39%), Gaps = 87/365 (23%)
Query: 33 VPGQRGR-GARAAPLVPAASASAPQRGPSGIL-PAAEPTICSLHQAWGGPGCRAQKGIPA 90
+PG G GA+ P +P + GP GI P P + GG G Q G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Query: 91 ALS-PGPGPIPAPI-------------PGPAQIPGPL----PGSIPGPIPGPAQIPSPIP 132
PG IP P PGP +PG G +PG IPG +P P
Sbjct: 1165 EKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPG-IPGNPGLPGPKG 1223
Query: 133 AP----IPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPN--PG- 185
P PG + GP PGP P P + GP PGP GP P +PGP PG
Sbjct: 1224 EPGFHGFPG-VQGP---PGPPGSPGPA-LEGPKGNPGP-QGPPGRPGFQGLPGPEGPPGL 1277
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGPISGP----NPGP-----------IPGPIPGP 230
P G I G P +PG +PG + G P NPG +PG +PG
Sbjct: 1278 PGNGGIKGEKGNPGQPGLPG-LPG-LKGDQGPPGLQGNPGRPGLNGMKGDPGLPG-VPGF 1334
Query: 231 ISGPNPGPIPGPISGPN--PGLI--PGP--IPGP------ISG----------------P 262
P +PG +GP PGLI PGP +PGP I G P
Sbjct: 1335 PGMKGPSGVPGS-AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLP 1393
Query: 263 GPIIGP--IPSPAQIPG-PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPA 319
GP GP +P P PG PGR PG + GR PG LPG G PG +
Sbjct: 1394 GPQ-GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPG-LPGQPGTRGLDGPPGPDGLQG 1451
Query: 320 PIPGP 324
P PGP
Sbjct: 1452 P-PGP 1455
Score = 83.6 bits (205), Expect = 3e-16
Identities = 105/320 (32%), Positives = 127/320 (39%), Gaps = 78/320 (24%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI---PGPIPGPAQIPSPIP 132
G PG + +KG A P P PG PG PG I PG ++ SP
Sbjct: 509 GFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA 568
Query: 133 APIPGPISGPVQIPG-PFRGPIPGPISGPAPIPGPIS-----GPFSGPNPGPIPGPNPGP 186
+PG +PG P + +PG + GP PG I+ GP P +PG N GP
Sbjct: 569 PGLPG-------LPGTPGQDGLPG-LPGPKGEPGGITFKGERGPPGNPGLPGLPG-NIGP 619
Query: 187 IPGPISGPIPGPISV---------PIPGPIPGPISGP---ISGPNPGPIPGP-------- 226
+ P GP PGP+ P IPGP P I+ P +PG
Sbjct: 620 MGPPGFGP-PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 227 IPGPISGPNPGPIPG-PISGPNPGL----IPGPIPGPISGPGPIIGPIPSPAQIPG-PGR 280
+PG P +PG P S PG+ +PGP PGP PG IP P PG PGR
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP-PGPKGFPG-----IPGPPGAPGTPGR 732
Query: 281 --LQGP-GPILSPGRMRSPG----------SLPGLAPILGPGSGPGSGSVPAP------- 320
L+GP GP PG PG LPG LGP G P P
Sbjct: 733 IGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLD 792
Query: 321 -IPGP----GSLPAPAPLWP 335
+PGP G P P+ P
Sbjct: 793 GLPGPKGDVGPNGQPGPMGP 812
Score = 77.8 bits (190), Expect = 2e-14
Identities = 89/260 (34%), Positives = 100/260 (38%), Gaps = 42/260 (16%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPG 137
G PG G+P PGP PGP IPGP P P
Sbjct: 51 GFPGLEGHPGLPG------------FPGPEGPPGPRGQKGDDGIPGP---------PGPK 89
Query: 138 PISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIP 196
I GP +PG P +PG + G PGP P G P PG + GP P
Sbjct: 90 GIRGPPGLPGFPGTPGLPG-MPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGP-P 146
Query: 197 GPISVPIPGPIPGP-ISGPISGP--NPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG 253
GP +P PG I + GP NPG PGP PG P P IPGPI P P + G
Sbjct: 147 GPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGP-PGIQGLPGPTGIPGPIGPPGPPGLMG 204
Query: 254 PIPGPISGPGP---IIGPIPSPAQIPGPGRLQG-PGPILSPGRMRSPGSL------PGLA 303
P PGP PGP + P G LQG PGP + P + GL
Sbjct: 205 P-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLP 263
Query: 304 PILGPGSGPGSGSVPAPIPG 323
GP PG P P PG
Sbjct: 264 GDRGPPGPPGIRGPPGP-PG 282
Score = 75.5 bits (184), Expect = 8e-14
Identities = 118/357 (33%), Positives = 139/357 (38%), Gaps = 75/357 (21%)
Query: 25 RLQQQPQRVPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC- 82
R Q+ +PG G +G R P +P + G G A P G PGC
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQ--------GIPGCN 125
Query: 83 --RAQKGIPAALSPGPGPIPAPIPGPAQIPGPL--PGSI-PGPIPGPAQIPS-PIPAPIP 136
+ ++G P SPG + P PGP IPG PGSI +PGP P P P I
Sbjct: 126 GTKGERGFPG--SPGFPGLQGP-PGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQ 182
Query: 137 GPISGPVQIPGPFRGPIP----GPISGPAPIPGP-------ISGPFSGPNPGPIPGPNPG 185
G + GP IPGP P P GP GP +PGP GP + GP PG
Sbjct: 183 G-LPGPTGIPGPIGPPGPPGLMGP-PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP-PG 239
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISG----------PN 235
P PG IS PI V G + G P P I GP PGP G P
Sbjct: 240 P-PGQISEQ-KRPIDVEFQKGDQG-LPGDRGPPGPPGIRGP-PGPPGGEKGEKGEQGEPG 295
Query: 236 PGPIPGPISGPN--PGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGR- 292
PG G N PG IPG +PG PG P + G+ GP PG
Sbjct: 296 KRGKPGK-DGENGQPG-IPG-LPGDPGYPG-------EPGRDGEKGQKGDTGPPGPPGLV 345
Query: 293 MRSPGS-----------LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSP 338
+ PG+ LPGL G PG P +PGP P A + P P
Sbjct: 346 IPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGP---PGAAVMGPPGP 398
Score = 68.9 bits (167), Expect = 8e-12
Identities = 111/369 (30%), Positives = 136/369 (36%), Gaps = 115/369 (31%)
Query: 33 VPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
+PG++G G + P +P +A GP G G PG R QKG
Sbjct: 366 LPGEKGERGFPGIQGPPGLPGPPGAAVM-GPPG--------------PPGFPGERGQKG- 409
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGS--IPGPIPGPA--QIPSPIPAPIPGPISGPVQ 144
GP IPGP + G PG+ +PGP PGPA IP PGP
Sbjct: 410 ------DEGPPGISIPGPPGLDGQ-PGAPGLPGP-PGPAGPHIPPSDEICEPGP------ 455
Query: 145 IPGPFRGPIPGPISGPAPIPGP------------ISGPFSGPNPGPIPGPNPGPIPGP-- 190
PGP P + G + G ISGP P +PGP PG + P
Sbjct: 456 -PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQ 513
Query: 191 --------ISGP-----IPGPISVP-IPGPI--PGPI---------SGPISGPNPGPIPG 225
+GP IPG P PG PG I G + P +PG
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG 573
Query: 226 PIPGPISGPNPGPIPGPISGP-------------NPGL--IPGPIPGPISGPGPIIGPIP 270
+PG +PGP P NPGL +PG I GP+ PG GP P
Sbjct: 574 -LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GPMGPPG--FGP-P 628
Query: 271 SPAQIPG-------PGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP--- 320
P G PG+ PGP PG+ + PGL PG+ G V P
Sbjct: 629 GPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGL-----PGNPGRDGDVGLPGDP 683
Query: 321 -IPGPGSLP 328
+PG LP
Sbjct: 684 GLPGQPGLP 692
Score = 67.0 bits (162), Expect = 3e-11
Identities = 93/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQ-----------IPGPLPGS-----IPGPI 121
G PG +KG P PGP IP P +PG LPG PG I
Sbjct: 322 GEPGRDGEKGQKGDTGP-PGPPGLVIPRPGTGITIGEKGNIGLPG-LPGEKGERGFPG-I 378
Query: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG 181
GP +P P A + GP GP PG RG IPGP G P +PG
Sbjct: 379 QGPPGLPGPPGAAVMGP-PGPPGFPGE-RGQKGDEGPPGISIPGP-PGLDGQPGAPGLPG 435
Query: 182 PNPGPIPGPISGPIPGPISVPIPGPIPGPISGP----------ISGPNPGPIPGPIPGPI 231
P PGP IP + PGP PGP P + G I I
Sbjct: 436 P-----PGPAGPHIPPSDEICEPGP-PGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGI 489
Query: 232 SGPNPGP-IPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPG-PGRLQGPGPILS 289
SGP P +PG + GP PG + P G GP P IPG PG PG
Sbjct: 490 SGPPGQPGLPG-LPGP-PGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGE 546
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPA-PAP 332
PG + + + G LG PG +P PG LP P P
Sbjct: 547 PGDILTFPGMKGDKGELGSPGAPGLPGLPG-TPGQDGLPGLPGP 589
Score = 65.1 bits (157), Expect = 1e-10
Identities = 116/375 (30%), Positives = 137/375 (36%), Gaps = 110/375 (29%)
Query: 27 QQQPQRVPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGC 82
Q+ Q +PG RG G R P P ++G G EP G PG
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKG--EKGEQG-----EPG------KRGKPGK 302
Query: 83 RAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPG--------SIPGPIPGPAQIPSPIPAP 134
+ G P PG +PG PG PG GP PGP + P P
Sbjct: 303 DGENGQPGI----PG-----LPGDPGYPGE-PGRDGEKGQKGDTGP-PGPPGLVIPRPGT 351
Query: 135 -IPGPISGPVQIPGPFRGPIPGP--------ISGPAPIPGPISGPFSGPNPGPIPGPNPG 185
I G + +PG +PG I GP +PGP GP PGP P
Sbjct: 352 GITIGEKGNIGLPG-----LPGEKGERGFPGIQGPPGLPGPPGAAVMGP-PGPPGFPGER 405
Query: 186 PIPGPISGPIPGPISVPIPGPIPGPISGP-ISGPNPGPI------------PGPIPGPIS 232
G GP PG IS+P P + G P + GP PGP PGP PGP
Sbjct: 406 GQKGD-EGP-PG-ISIPGPPGLDGQPGAPGLPGP-PGPAGPHIPPSDEICEPGP-PGPPG 460
Query: 233 GPNPGPIPGP------------------ISGP--NPGL--IPGPIPGPISGPGP------ 264
P + G ISGP PGL +PGP PG + PG
Sbjct: 461 SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP-PGSLGFPGQKGEKGQ 519
Query: 265 --IIGP-----IPSPAQIPG-PGRLQGPGPILS-PGRMRSPGSL--PGLAPILGPGSGPG 313
GP IP PG PG PG IL+ PG G L PG + G PG
Sbjct: 520 AGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPG 579
Query: 314 SGSVPAPIPGPGSLP 328
+P +PGP P
Sbjct: 580 QDGLPG-LPGPKGEP 593
Score = 53.5 bits (127), Expect = 3e-07
Identities = 61/180 (33%), Positives = 65/180 (36%), Gaps = 30/180 (16%)
Query: 176 PGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGP--IPGPISG 233
PG P PGP GP PGP IPGP P P I GP +PG
Sbjct: 53 PGLEGHPGLPGFPGP-EGP-PGPRGQKGDDGIPGP-------PGPKGIRGPPGLPGFPGT 103
Query: 234 PNPGPIPGPISGPNPGLIPG--PIPGPISGPGPIIGPIPSPAQIPGPGRLQGP-GPILSP 290
P +PG P P IPG G PG PG LQGP GP P
Sbjct: 104 PGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS-----------PGFPGLQGPPGPPGIP 152
Query: 291 GRMRSPGS-----LPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
G PGS LPG G PG +P P PG + P P P LP
Sbjct: 153 GMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLP 212
Score = 50.8 bits (120), Expect = 2e-06
Identities = 65/210 (30%), Positives = 80/210 (38%), Gaps = 50/210 (23%)
Query: 30 PQRVPGQRG----RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQ 85
P +PG G +G P +P +GP G+ P L+ G PG
Sbjct: 1274 PPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL--QGNPGRPGLNGMKGDPGLPGV 1331
Query: 86 KGIPAALSP-------GPGPIPAPI--PGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP 136
G P P GP P I PGP +PGP SI I G A
Sbjct: 1332 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI--IIKGDA----------- 1378
Query: 137 GPISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPG--------PNPGPI 187
GP IPG P +PGP GP +PGP +GP P +PG +PG +
Sbjct: 1379 ----GPPGIPGQPGLKGLPGP-QGPQGLPGP-TGPPGDPGRNGLPGFDGAGGRKGDPG-L 1431
Query: 188 PGP-----ISGPIPGPISVPIPGPIPGPIS 212
PG + GP PGP + P PG S
Sbjct: 1432 PGQPGTRGLDGP-PGPDGLQGPPGPPGTSS 1460
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 97.8 bits (242), Expect = 2e-20
Identities = 88/264 (33%), Positives = 111/264 (42%), Gaps = 38/264 (14%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP-ISGPVQIPGPFR 150
+SP P P+P P+P IP P P ++P P P Q P+ + P + P+ IP P
Sbjct: 655 VSPIPKPLPVPVP---PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGF 711
Query: 151 GPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPG--PISVP--IPGP 206
GP P P P P P P PG +P P PI P+S P P PIS+P + G
Sbjct: 712 GPGVPPPPPPPPFLRPGFNPMHLP-PGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGA 770
Query: 207 IPGPISG----------PISGPNPGPIPGPIPGPIS-----GPNPGPIPG------PISG 245
SG P + P P P P+ P+S G PGP+ G + G
Sbjct: 771 RGNAESGDSVKMYGSAVPPAAPTNLPTP-PVTQPVSLLGTQGVAPGPVIGLQAPSTGLLG 829
Query: 246 PNPGLIPGPIPGPISGPG----PIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPG 301
PGLIP P + P P++ P P P + G GPG P G P
Sbjct: 830 ARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPP 889
Query: 302 LAPILGPGSGPGSGSVPAPIPGPG 325
P + PG PG G P PGPG
Sbjct: 890 HGPFVRPGGMPGLG---GPGPGPG 910
Score = 94.4 bits (233), Expect = 2e-19
Identities = 94/312 (30%), Positives = 120/312 (38%), Gaps = 59/312 (18%)
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPG----------------SIPGPIPGPAQIPS 129
K +P + P P P P +P P Q+P PG IP P GP P
Sbjct: 660 KPLPVPVPPIPVPAPITVP-PPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPP 718
Query: 130 PIPAPIPGPISGPVQIPGPFRGP-IPGPISGPAPIPGPISGPFSGPN------------- 175
P P P P P+ +P F P P PI+ P IP P + P S PN
Sbjct: 719 PPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESGD 778
Query: 176 -----PGPIPGPNPGPIPGPISGPIPGPIS-VPIPGPIPGPISGPISGPNPGPIPGPIPG 229
+P P +P P P+ P+S + G PGP+ G + P+ G + G PG
Sbjct: 779 SVKMYGSAVPPAAPTNLPTP---PVTQPVSLLGTQGVAPGPVIG-LQAPSTG-LLGARPG 833
Query: 230 PISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILS 289
I P +P P P + P P+P + GP P P +P P ++GP P
Sbjct: 834 LIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGP--PPGPGGFAMPPPHGMKGPFP--P 889
Query: 290 PGRMRSPGSLPGLAPILGPGSGPGS----------GSVPAPIPGPGSLPAPAPLWPQSPD 339
G PG +PGL GPG GPG P P P + P Q P
Sbjct: 890 HGPFVRPGGMPGLG---GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPP 946
Query: 340 ASDFLPDTQLFP 351
S P TQ P
Sbjct: 947 PSQQPPPTQQQP 958
Score = 46.6 bits (109), Expect = 4e-05
Identities = 58/206 (28%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 30 PQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL--PAAEP-TICSLHQAWGGPGCRAQK 86
P V G RG A + V ++ P P+ + P +P ++ GP Q
Sbjct: 764 PNLVSGARGN-AESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQA 822
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPIS--GPVQ 144
L PG IP P PG P P + P P P+P + GP
Sbjct: 823 PSTGLLGARPGLIPLQRP---------PGMPP---PHLQRFPLMPPRPMPPHMMHRGPPP 870
Query: 145 IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIP 204
PG F P P + GP P GP P G PG + GP PGP P P
Sbjct: 871 GPGGFAMPPPHGMKGPFPPHGPFVRP--GGMPG-LGGPGPGPGGPEDRDGRQQPPQQPQQ 927
Query: 205 GPIPGPISGPISGPNPGPIPGPIPGP 230
P P P P P P P
Sbjct: 928 QPQPQAPQQPQQQQQQQPPPSQQPPP 953
Score = 29.6 bits (65), Expect = 5.2
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 89 PAALSPGPGPIPAPIPG-----PAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP--GPISG 141
PAA SP P P PG PA + G Q P P+P G + G
Sbjct: 308 PAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPG 367
Query: 142 PVQIPGPFRGPIPGPISGPAPIPGPISGPF 171
+P P P+ P+ P P P+ PF
Sbjct: 368 FGLLPTPPFPPMAQPVIPPTP---PVQQPF 394
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 97.4 bits (241), Expect = 2e-20
Identities = 91/286 (31%), Positives = 114/286 (39%), Gaps = 60/286 (20%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP-ISGPVQIPGPFR 150
+SP P P+P P+P IP P P ++P P P Q P+ + P + P+ IP P
Sbjct: 640 VSPIPKPLPVPVP---PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGF 696
Query: 151 GPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPG--PISVP------ 202
GP P P P P P P PG +P P PI P+S P P PIS+P
Sbjct: 697 GPGVPPPPPPPPFLRPGFNPMHLP-PGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAG 755
Query: 203 ----------IPGPIPGPISG------------------PISGPNPGPIPGPIPGPIS-- 232
I PIP +SG P + P P P P+ P+S
Sbjct: 756 INEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTP-PVTQPVSLL 814
Query: 233 ---GPNPGPIPG------PISGPNPGLIPGPIPGPISGPG----PIIGPIPSPAQIPGPG 279
G PGP+ G + G PGLIP P + P P++ P P P + G
Sbjct: 815 GTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRG 874
Query: 280 RLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPG 325
GPG P G P P + PG PG G P PGPG
Sbjct: 875 PPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLG---GPGPGPG 917
Score = 94.4 bits (233), Expect = 2e-19
Identities = 102/336 (30%), Positives = 126/336 (37%), Gaps = 85/336 (25%)
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPG----------------SIPGPIPGPAQIPS 129
K +P + P P P P +P P Q+P PG IP P GP P
Sbjct: 645 KPLPVPVPPIPVPAPITVP-PPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPP 703
Query: 130 PIPAPIPGPISGPVQIPGPFRGP-IPGPISGPAPIPGPISGPFSGPNPGPIPGPNP---- 184
P P P P P+ +P F P P PI+ P IP P + P S PN I G N
Sbjct: 704 PPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPN-STIAGINEDTTK 762
Query: 185 -----GPIPGPISG------------------PIPGPISVPIPGPIPGPISGPISGPNPG 221
PIP +SG P P ++P P P+ P+S + G G
Sbjct: 763 DLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTP-PVTQPVS--LLG-TQG 818
Query: 222 PIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPG----PIIGPIPSPAQI-- 275
PGP+ G + P+ G + G PGLIP P + P P++ P P P +
Sbjct: 819 VAPGPVIG-LQAPSTG-----LLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 872
Query: 276 ----PGPGRLQGP------GPILSPGRMRSPGSLPGLAPILGPGSGPGS----------G 315
PGPG P GP G PG +PGL GPG GPG
Sbjct: 873 RGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLG---GPGPGPGGPEDRDGRQQPP 929
Query: 316 SVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFP 351
P P P + P Q P S P TQ P
Sbjct: 930 QQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP 965
Score = 45.8 bits (107), Expect = 7e-05
Identities = 58/206 (28%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 30 PQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL--PAAEP-TICSLHQAWGGPGCRAQK 86
P V G RG A + V ++ P P+ + P +P ++ GP Q
Sbjct: 771 PTVVSGARGN-AESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQA 829
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPIS--GPVQ 144
L PG IP P PG P P + P P P+P + GP
Sbjct: 830 PSTGLLGARPGLIPLQRP---------PGMPP---PHLQRFPLMPPRPMPPHMMHRGPPP 877
Query: 145 IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIP 204
PG F P P + GP P GP P G PG + GP PGP P P
Sbjct: 878 GPGGFAMPPPHGMKGPFPPHGPFVRP--GGMPG-LGGPGPGPGGPEDRDGRQQPPQQPQQ 934
Query: 205 GPIPGPISGPISGPNPGPIPGPIPGP 230
P P P P P P P
Sbjct: 935 QPQPQAPQQPQQQQQQQPPPSQQPPP 960
Score = 29.6 bits (65), Expect = 5.2
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 89 PAALSPGPGPIPAPIPG-----PAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP--GPISG 141
PAA SP P P PG PA + G Q P P+P G + G
Sbjct: 293 PAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPG 352
Query: 142 PVQIPGPFRGPIPGPISGPAPIPGPISGPF 171
+P P P+ P+ P P P+ PF
Sbjct: 353 FGLLPTPPFPPMAQPVIPPTP---PVQQPF 379
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 97.4 bits (241), Expect = 2e-20
Identities = 91/286 (31%), Positives = 114/286 (39%), Gaps = 60/286 (20%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGP-ISGPVQIPGPFR 150
+SP P P+P P+P IP P P ++P P P Q P+ + P + P+ IP P
Sbjct: 655 VSPIPKPLPVPVP---PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGF 711
Query: 151 GPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPG--PISVP------ 202
GP P P P P P P PG +P P PI P+S P P PIS+P
Sbjct: 712 GPGVPPPPPPPPFLRPGFNPMHLP-PGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAG 770
Query: 203 ----------IPGPIPGPISG------------------PISGPNPGPIPGPIPGPIS-- 232
I PIP +SG P + P P P P+ P+S
Sbjct: 771 INEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTP-PVTQPVSLL 829
Query: 233 ---GPNPGPIPG------PISGPNPGLIPGPIPGPISGPG----PIIGPIPSPAQIPGPG 279
G PGP+ G + G PGLIP P + P P++ P P P + G
Sbjct: 830 GTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRG 889
Query: 280 RLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPG 325
GPG P G P P + PG PG G P PGPG
Sbjct: 890 PPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLG---GPGPGPG 932
Score = 94.4 bits (233), Expect = 2e-19
Identities = 102/336 (30%), Positives = 126/336 (37%), Gaps = 85/336 (25%)
Query: 86 KGIPAALSPGPGPIPAPIPGPAQIPGPLPG----------------SIPGPIPGPAQIPS 129
K +P + P P P P +P P Q+P PG IP P GP P
Sbjct: 660 KPLPVPVPPIPVPAPITVP-PPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPP 718
Query: 130 PIPAPIPGPISGPVQIPGPFRGP-IPGPISGPAPIPGPISGPFSGPNPGPIPGPNP---- 184
P P P P P+ +P F P P PI+ P IP P + P S PN I G N
Sbjct: 719 PPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPN-STIAGINEDTTK 777
Query: 185 -----GPIPGPISG------------------PIPGPISVPIPGPIPGPISGPISGPNPG 221
PIP +SG P P ++P P P+ P+S + G G
Sbjct: 778 DLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTP-PVTQPVS--LLG-TQG 833
Query: 222 PIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPG----PIIGPIPSPAQI-- 275
PGP+ G + P+ G + G PGLIP P + P P++ P P P +
Sbjct: 834 VAPGPVIG-LQAPSTG-----LLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 887
Query: 276 ----PGPGRLQGP------GPILSPGRMRSPGSLPGLAPILGPGSGPGS----------G 315
PGPG P GP G PG +PGL GPG GPG
Sbjct: 888 RGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLG---GPGPGPGGPEDRDGRQQPP 944
Query: 316 SVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFP 351
P P P + P Q P S P TQ P
Sbjct: 945 QQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP 980
Score = 45.8 bits (107), Expect = 7e-05
Identities = 58/206 (28%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 30 PQRVPGQRGRGARAAPLVPAASASAPQRGPSGIL--PAAEP-TICSLHQAWGGPGCRAQK 86
P V G RG A + V ++ P P+ + P +P ++ GP Q
Sbjct: 786 PTVVSGARGN-AESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQA 844
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPIS--GPVQ 144
L PG IP P PG P P + P P P+P + GP
Sbjct: 845 PSTGLLGARPGLIPLQRP---------PGMPP---PHLQRFPLMPPRPMPPHMMHRGPPP 892
Query: 145 IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIP 204
PG F P P + GP P GP P G PG + GP PGP P P
Sbjct: 893 GPGGFAMPPPHGMKGPFPPHGPFVRP--GGMPG-LGGPGPGPGGPEDRDGRQQPPQQPQQ 949
Query: 205 GPIPGPISGPISGPNPGPIPGPIPGP 230
P P P P P P P
Sbjct: 950 QPQPQAPQQPQQQQQQQPPPSQQPPP 975
Score = 29.6 bits (65), Expect = 5.2
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 89 PAALSPGPGPIPAPIPG-----PAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP--GPISG 141
PAA SP P P PG PA + G Q P P+P G + G
Sbjct: 308 PAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPG 367
Query: 142 PVQIPGPFRGPIPGPISGPAPIPGPISGPF 171
+P P P+ P+ P P P+ PF
Sbjct: 368 FGLLPTPPFPPMAQPVIPPTP---PVQQPF 394
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 96.3 bits (238), Expect = 5e-20
Identities = 101/343 (29%), Positives = 120/343 (34%), Gaps = 86/343 (25%)
Query: 93 SPGPGPIPAPIPGPAQIPGPLPGS---IPGPIPGPAQIPSPIPAPIPG--PISGPVQIPG 147
SPGPGP P + GP+ PGP PGS + GP PGP PIP PG P Q+
Sbjct: 17 SPGPGPSPGAMLGPS--PGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHK 74
Query: 148 PFR-----------------------------GPIPGPI-----------------SGPA 161
P GP P P+ S P
Sbjct: 75 PMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV 134
Query: 162 PIPGPISGP--FSGPNPGPIPGPNPGPIPGPISGPIP------GPISVPIPG-------- 205
P GP SGP SGP P+ G +P + GP P + I
Sbjct: 135 PASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ 194
Query: 206 PIPGPISGPISGPNPGP-----IPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
P+P + + G P P +P P +S PGP PGP GP PG PGP P S
Sbjct: 195 PLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGP--GPGPG--PGPAPPNYS 250
Query: 261 GPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
P + GP P PGP + P PG P +A P S P P P
Sbjct: 251 RPHGMGGPNMPP---PGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQP 307
Query: 321 IPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPL 363
P P P P AS +P P P+ PL
Sbjct: 308 TGRPSPAPPAVP-----PAASPVMPPQTQSPGQPAQPAPMVPL 345
Score = 79.7 bits (195), Expect = 4e-15
Identities = 88/327 (26%), Positives = 118/327 (36%), Gaps = 75/327 (22%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGI----LPAAEPTICSLHQAWGGP- 80
L P PG +P P+A P +GP G + + S+H+
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDD 87
Query: 81 -------GCRAQKGIPAALSPGPGPI-------PAPIPGPAQIPGPLPGSIPGPIPGPAQ 126
G + G A + P P P+ P+P+ G P+P S GP GP
Sbjct: 88 PRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPAS--GPSSGPQM 145
Query: 127 IPSPIPAPIPGPISGPVQIPGPFRGPIPG------------------------------P 156
P AP+ G + P + RGP P
Sbjct: 146 SSGPGGAPLDG--ADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 157 ISGPAPIPG-----------PISGPFSGPNPGPIPGPNPGPIPGPISGP--IPGPISVPI 203
+ G P+PG +S GP PGP PGP PGP P S P + GP ++P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGP-NMPP 262
Query: 204 PGPIPGPISGPISGPNPGPIPGPIP-GPI-SGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
PGP P P G PG P P P GP+ + P P + P P P P P +
Sbjct: 263 PGPSGVPPGMP--GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVP- 319
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPIL 288
P P+ P Q PG+ P P++
Sbjct: 320 --PAASPV-MPPQTQSPGQPAQPAPMV 343
Score = 75.5 bits (184), Expect = 8e-14
Identities = 85/305 (27%), Positives = 105/305 (34%), Gaps = 86/305 (28%)
Query: 116 SIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPA-PIPGPISGPFSGP 174
S P P G P P P P P PG GP PGP G A + GP GP P
Sbjct: 2 STPDPPLGGTPRPGPSPGPGPS--------PGAMLGPSPGPSPGSAHSMMGPSPGP---P 50
Query: 175 NPG-PIPGPNPGPIPGPISGPIPGPI-SVPIPGPIPGPISGPISG--------PNPGPIP 224
+ G PIP PG P + P+ S+ G P + G GP P
Sbjct: 51 SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPP 110
Query: 225 GPI-------PGPISGPNPGPIPGPISGPN--PGLIPGPIPGPISGPGP-IIG------- 267
P+ P P+ G P P SGP+ P + GP P+ G P +G
Sbjct: 111 SPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPT 170
Query: 268 ------------------------PIPSPAQIPGPGRLQGPG-----PILSPGRMRSPGS 298
P+P Q+ G+ PG P L P + + G
Sbjct: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
Query: 299 LPGLAPILGPGSGP---------GSGSVPAPIPGPGSLP---------APAPLWPQSPDA 340
PG P GPG GP G G P PGP +P P WP+ P A
Sbjct: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
Query: 341 SDFLP 345
+ P
Sbjct: 291 NAAAP 295
Score = 52.0 bits (123), Expect = 1e-06
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL 302
+S P+P L P PGP GPG P PG + GP P SPG S
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPG------------PSPGAMLGPSPGPSPGSAHS------- 41
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLP 328
++GP GP S P P GPG P
Sbjct: 42 --MMGPSPGPPSAGHPIPTQGPGGYP 65
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 96.3 bits (238), Expect = 5e-20
Identities = 106/331 (32%), Positives = 130/331 (39%), Gaps = 68/331 (20%)
Query: 33 VPGQRGRGARAAPL------VPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
+PG G G + P +P + + GP G+ G PG + Q+
Sbjct: 588 LPGPPGDGIKGPPGDPGYPGIPGTKGTPGEMGPPGL---------------GLPGLKGQR 632
Query: 87 GIPA-ALSPGPGPIPAPIPGPAQIPGPLP--GSIPGPIPGPAQIPSPIPAPIPGPISGPV 143
G P A PGP P PGPA PG + + + G Q A PG I GP
Sbjct: 633 GFPGDAGLPGPPGFLGP-PGPAGTPGQIDCDTDVKRAVGGDRQ-----EAIQPGCIGGPK 686
Query: 144 QIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPN-----PGPIPGPISGPIPGP 198
+PG P P G IPG +G GP P +PG PGP PG I GP
Sbjct: 687 GLPGLPGPPGPTGAKGLRGIPG-FAGADGGPGPRGLPGDAGREGFPGP-PGFI-GPRGSK 743
Query: 199 ISVPIPGPIPGPISGPISGPNPGPIPGP--IPGPISGPNPGP-----IPGPISGPNPGLI 251
+V +PGP P GPI P P PG +PG + G PGP +PG PGL
Sbjct: 744 GAVGLPGPDGSP--GPIGLPGPDGPPGERGLPGEVLGAQPGPRGDAGVPG-----QPGL- 795
Query: 252 PGPIPGPISGPGPIIGPIPSPAQIPGPGRLQG----PGPILSPGRMRSPG-----SLPGL 302
+PG PG +PG L+G PGP PG PG PG
Sbjct: 796 -KGLPGDRGPPG-----FRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQ 849
Query: 303 APILGPGSGPGSGSVPAPIPGPGSLPAPAPL 333
LG PG +P PG AP P+
Sbjct: 850 EGPLGLPGIPGREGLPGDRGDPGDTGAPGPV 880
Score = 82.0 bits (201), Expect = 9e-16
Identities = 91/290 (31%), Positives = 113/290 (38%), Gaps = 44/290 (15%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPA-----PIPGPAQIPGPLPGSIPGPIPGPAQIPSPIP 132
G PG KG P + P +P PG A +PGP PG + GP PGPA P I
Sbjct: 604 GYPGIPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAGLPGP-PGFL-GP-PGPAGTPGQID 660
Query: 133 AP--IPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP 190
+ + G Q PG I GP +PG + GP PGP IPG
Sbjct: 661 CDTDVKRAVGGDRQ-----EAIQPGCIGGPKGLPG-LPGP-----PGPTGAKGLRGIPG- 708
Query: 191 ISGPIPGPISVPIPGP-----IPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISG 245
+G GP +PG PGP GP +PGP P P +PGP G
Sbjct: 709 FAGADGGPGPRGLPGDAGREGFPGPPG--FIGPRGSKGAVGLPGPDGSPGPIGLPGP-DG 765
Query: 246 PNPGLIPGPIPGPISGPGPIIGPIPSP---AQIPGPGRLQG-PGPILSPGRMRSPGSLPG 301
P PG PG ++G P P A +PG L+G PG PG S G +PG
Sbjct: 766 P---------PGERGLPGEVLGAQPGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQG-MPG 815
Query: 302 LAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFP 351
+ + G PG P PG P + P +P + P
Sbjct: 816 MPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPGREGLP 865
Score = 72.4 bits (176), Expect = 7e-13
Identities = 105/352 (29%), Positives = 126/352 (35%), Gaps = 67/352 (19%)
Query: 30 PQRVPGQRG--------RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPG 81
P +PG G +GA+ P S RGP G A C+ G
Sbjct: 436 PPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECRCT-------EG 488
Query: 82 CRAQKGIPAALSPGPGPIPAPIPGPAQIPG----PLPGSIPGPIPGPAQIPSPIPAPIPG 137
A KG+P PGP A I G G P +PG PG +P I AP
Sbjct: 489 DEAIKGLPGL--PGPKGF-AGINGEPGRKGDRGDPGQHGLPG-FPGLKGVPGNIGAP--- 541
Query: 138 PISGPVQIPGPFRGPIPGPISGPAPIPGP--ISGPFSGPNPGPIPGPNPGPIPGPISGPI 195
GP G R G +PG + G P + G PG +PGP I
Sbjct: 542 ---GPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGSPGRDGLDG-FPG-LPGPPGDGI 596
Query: 196 PGPISVP----IPGP--IPGPISGPISG----------PNPGPIPGPIPGPISGPNPGPI 239
GP P IPG PG + P G P +PGP PG + P P
Sbjct: 597 KGPPGDPGYPGIPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAGLPGP-PGFLGPPGPAGT 655
Query: 240 PGPI-----------SGPNPGLIPGPIPGPISGPGPIIGPIPSPAQ----IPG-PGRLQG 283
PG I + PG I GP PG P P+ A+ IPG G G
Sbjct: 656 PGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGG 715
Query: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWP 335
PGP PG G PG +GP G+ +P P PG + P P P
Sbjct: 716 PGPRGLPGDAGREG-FPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGP 766
Score = 55.5 bits (132), Expect = 9e-08
Identities = 91/361 (25%), Positives = 111/361 (30%), Gaps = 58/361 (16%)
Query: 33 VPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAA 91
+PG+ G +G R +P ++G G + P I + G PG + Q G P
Sbjct: 1099 LPGRPGLKGERGTTGIPGLKGFFGEKGTEGDI--GFPGITGVTGVQGPPGLKGQTGFPGL 1156
Query: 92 LSPGP-----GPIPAP-------IPGPAQIPG-----------------PLPGSIPGPIP 122
P G I P PG +PG PGS I
Sbjct: 1157 TGPPGSQGELGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIH 1216
Query: 123 GPAQIPSPIPAPIPGPISGPVQ---IPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPI 179
G P P PG P + +PGP P G GP P PG
Sbjct: 1217 GDPGFPGP-----PGERGDPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGIT 1271
Query: 180 PGPNPGPIPGPISGP-------IPGPISVPIPGPIPGPISGPISGPNPGPIPGPI----- 227
P N PG P GP P +PG G P PG
Sbjct: 1272 PPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGS-KGDTGNPGAPGTPGTKGWAGD 1330
Query: 228 PGPISGPNPGPIPGPISGPN--PGLIPGPIP-GPISGPGPIIGPIPSPAQIPGPGRLQGP 284
GP P +PG GP G + P G + GP GP P PG + P
Sbjct: 1331 SGPQGRPGVFGLPGE-KGPRGEQGFMGNTGPTGAVGDRGPK-GPKGDPGFPGAPGTVGAP 1388
Query: 285 GPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFL 344
G P ++ G GP PG P PG AP PQ +
Sbjct: 1389 GIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQGRGGVSAV 1448
Query: 345 P 345
P
Sbjct: 1449 P 1449
Score = 45.1 bits (105), Expect = 1e-04
Identities = 97/323 (30%), Positives = 112/323 (34%), Gaps = 68/323 (21%)
Query: 31 QRVPGQRGR----GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGP------ 80
Q PG +GR G R AP V RG SG P A+ H GGP
Sbjct: 78 QGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGF-PGADGI--PGHPGQGGPRGRPGY 134
Query: 81 -GCRAQKGIPAALSPGP-GPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSP--IPAPIP 136
GC +G GP GP PG GP PGP Q P +P
Sbjct: 135 DGCNGTQG-----DSGPQGP-----PGSEGFTGP-----PGPQGPKGQKGEPYALPKEER 179
Query: 137 GPISGPVQIPG--PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGP 194
G PG F+GP P G GP+ P PGP PGP PGP
Sbjct: 180 DRYRGEPGEPGLVGFQGPPGRP--GHVGQMGPVGAP---GRPGP-----PGP-PGPKGQQ 228
Query: 195 IPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGP-----NPGPIPGPISGPNPG 249
G + G + G G + P P IP PI P +P G
Sbjct: 229 --GNRGLGFYG-VKGE-KGDVGQPGPNGIPSDTLHPIIAPTGVTFHPDQYKGEKGSEGE- 283
Query: 250 LIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPG 309
PG + G I+G P PG +G SPG+ S G L GP
Sbjct: 284 --PGIRGISLKGEEGIMG-FPGLRGYPGLSGEKG-----SPGQKGSRG----LDGYQGP- 330
Query: 310 SGPGSGSVPAPIPGPGSLPAPAP 332
GP A PGP LPA +P
Sbjct: 331 DGPRGPKGEAGDPGPPGLPAYSP 353
Score = 44.3 bits (103), Expect = 2e-04
Identities = 94/349 (26%), Positives = 119/349 (34%), Gaps = 75/349 (21%)
Query: 30 PQRVPGQRG-RGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGI 88
P + G G +G + P +P S G G + + I G PG G
Sbjct: 998 PMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDI-------GVPGIPGLPGF 1050
Query: 89 PAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP-GPISGPVQIPG 147
P P PG PG + PG A + I A G I + +PG
Sbjct: 1051 PGVAGP---------PGITGFPGFIGSRGDKGAPGRAGLYGEIGATGDFGDIGDTINLPG 1101
Query: 148 PFRGPIPGPISGPAPIPGPISGPFSGPNP-GPIPGPNPGPIPGPISGP--IPGPISVP-I 203
R + G G IPG + G F G I P + G + GP + G P +
Sbjct: 1102 --RPGLKGE-RGTTGIPG-LKGFFGEKGTEGDIGFPGITGVTG-VQGPPGLKGQTGFPGL 1156
Query: 204 PGP-----------IPGPISGPISGPNPGPIPGPIPG----------PISGPNPGPIPGP 242
GP +PG G P +PG PG P + PG
Sbjct: 1157 TGPPGSQGELGRIGLPGG-KGDDGWPGAPGLPG-FPGLRGIRGLHGLPGTKGFPGSPGSD 1214
Query: 243 ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGP----GPILSPGRMRSPGS 298
I G +PG PGP PG PG +P P +PG QG GP SPG PG
Sbjct: 1215 IHG-DPGF-PGP-PGERGDPGEA-NTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGI 1270
Query: 299 LP-----------------GLAPILGPGSGPGSGSVPAPIPGPGSLPAP 330
P GL GP PGS ++P G+ AP
Sbjct: 1271 TPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAP 1319
Score = 43.9 bits (102), Expect = 3e-04
Identities = 94/332 (28%), Positives = 104/332 (31%), Gaps = 73/332 (21%)
Query: 30 PQRVPGQRGRGARAAPLVPAASASAPQ----------RGPSGILPAAEPTICSLHQAWGG 79
PQ PG G P P P RG G EP + G
Sbjct: 146 PQGPPGSEGFTGPPGPQGPKGQKGEPYALPKEERDRYRGEPG-----EPGLVGFQGPPGR 200
Query: 80 PGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPI--------PGPAQIPSPI 131
PG Q G P PGP P P PGP G G PGP IPS
Sbjct: 201 PGHVGQMG-PVGAPGRPGP-PGP-PGPKGQQGNRGLGFYGVKGEKGDVGQPGPNGIPSDT 257
Query: 132 PAPIPGPISGPVQIPGPFRGPI-----PG----PISGPAPIPG--------PISGPFSGP 174
PI P +G P ++G PG + G I G +SG P
Sbjct: 258 LHPIIAP-TGVTFHPDQYKGEKGSEGEPGIRGISLKGEEGIMGFPGLRGYPGLSGEKGSP 316
Query: 175 NPGPIPGPNPGPIPGPISGPI-----PGPISVPIPGPIPGPISGPISGPNPGPIPGPIPG 229
G + P GP PGP +P P P G P PG
Sbjct: 317 GQKGSRGLDGYQGPDGPRGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPG---FPGAQGE 373
Query: 230 PISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGP-GPIL 288
P S PG +PGL PGP PG IG +PG GP G I
Sbjct: 374 PGSQGEPG---------DPGL-----PGP---PGLSIGDGDQRRGLPGE---MGPKGFIG 413
Query: 289 SPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
PG G PG GP PG P P
Sbjct: 414 DPGIPALYGGPPGPDGKRGPPGPPGLPGPPGP 445
Score = 42.7 bits (99), Expect = 6e-04
Identities = 94/330 (28%), Positives = 120/330 (36%), Gaps = 66/330 (20%)
Query: 31 QRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPA 90
Q +PG +GR P P + A G G+ A G PG + +G P
Sbjct: 931 QGMPGLKGR-----PGFPGSKGEAGFFGIPGLKGLA-----------GEPGFKGSRGDPG 974
Query: 91 ALSPGPGPIPAPIPGPAQIPGP--------LPG--------SIPGPIPGPAQIPS--PIP 132
PGP P +PG I G L G +PG IPG + IP P
Sbjct: 975 P----PGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPG-IPGLSGIPGLPGRP 1029
Query: 133 APIPGPISGPVQIPG-PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPI 191
I G + G + +PG P PG ++GP PG P + G P + G I
Sbjct: 1030 GHIKG-VKGDIGVPGIPGLPGFPG-VAGP---PGITGFPGFIGSRGDKGAPGRAGLYGEI 1084
Query: 192 S-----GPIPGPISVPIPGPIPGPISGPISGPNPGPIPGP--IPGPISGPNPGPIPGPIS 244
G I I++P + G G P G G I P + G +
Sbjct: 1085 GATGDFGDIGDTINLPGRPGLKGE-RGTTGIPGLKGFFGEKGTEGDIGFPGITGVTG-VQ 1142
Query: 245 GPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAP 304
GP PGL G PG + GP S ++ G G G PG PG PGL
Sbjct: 1143 GP-PGL-----KGQTGFPG-LTGPPGSQGELGRIGLPGGKGDDGWPGAPGLPG-FPGLRG 1194
Query: 305 ILG----PGSGPGSGSVPAPIPGPGSLPAP 330
I G PG+ GS + I G P P
Sbjct: 1195 IRGLHGLPGTKGFPGSPGSDIHGDPGFPGP 1224
Score = 30.8 bits (68), Expect = 2.3
Identities = 49/171 (28%), Positives = 57/171 (33%), Gaps = 26/171 (15%)
Query: 184 PGPI-PGPISGPIPGPISVP----------------IPGPIPGPISGPISG-PNPGPIPG 225
PGP+ P +GP PG P + GP + +SG P IPG
Sbjct: 63 PGPVGPQGYNGP-PGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGFPGADGIPG 121
Query: 226 PIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPG 285
PG GP P +G P PG GP GP Q P L
Sbjct: 122 H-PGQ-GGPRGRPGYDGCNGTQGDSGPQGPPGSEGFTGPP-GPQGPKGQKGEPYAL---- 174
Query: 286 PILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQ 336
P R R PGL GP PG P+ PG P P P+
Sbjct: 175 PKEERDRYRGEPGEPGLVGFQGPPGRPGHVGQMGPVGAPGRPGPPGPPGPK 225
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 95.5 bits (236), Expect = 8e-20
Identities = 87/237 (36%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 79 GPGCRAQKGIPAALSPGPG------PIPAPIPG------PAQIPGPL--PGSIPGPIPGP 124
G G +G + PGPG PIP P P P Q P P P P P P P
Sbjct: 37 GMGLNQNRG---PMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQP 93
Query: 125 AQIPSPIPAPIPGPISGPVQIPGPFRGPIPG-----PISGPAPIPGPISGPFSGPNPGPI 179
Q P P P S PV GP GP PG P S AP P + P SG PG
Sbjct: 94 HQQQQPPPPPQDS--SKPVVAQGP--GPAPGVGSAPPASSSAP---PATPPTSGAPPGSG 146
Query: 180 PGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPI 239
PGP P P P S P P P P G + P P P P +PGP GP GP
Sbjct: 147 PGPTPTPPPAVTSAPPGAPPPTP---PSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Query: 240 PGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSP 296
PG GP G +PG P P GPG + +P P P G P GR P
Sbjct: 204 PG---GPKGGKMPGG-PKPGGGPG-----LSTPGGHPKPPHRGGGEP--RGGRQHHP 249
Score = 90.5 bits (223), Expect = 2e-18
Identities = 87/244 (35%), Positives = 94/244 (38%), Gaps = 34/244 (13%)
Query: 74 HQAWGGPGCRAQKGIPAALSPGPG----PIPAPI-PGPAQIPGPLPGSIPGPIPGPAQIP 128
H+ GG G + G+ SP PG P+ PGP Q GP P P P P P Q
Sbjct: 17 HRRGGGGG---RGGLHDFRSPPPGMGLNQNRGPMGPGPGQ-SGPKP---PIPPPPPHQQQ 69
Query: 129 SPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIP 188
P P P P P P P P P P P S P PGP PG P
Sbjct: 70 QQPPPQQPPPQQPPPHQPPPH--PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAP-- 125
Query: 189 GPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNP 248
P S P P P SG G PGP P P P S P P P P S P
Sbjct: 126 -------PASSSAP---PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175
Query: 249 GLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGP 308
P GP P + GP P P Q PGPG GP PG + PG PGL+ P
Sbjct: 176 -TTPPQAGGPPPPPAAVPGPGPGPKQGPGPG---GPKGGKMPGGPK-PGGGPGLST---P 227
Query: 309 GSGP 312
G P
Sbjct: 228 GGHP 231
Score = 70.1 bits (170), Expect = 3e-12
Identities = 67/201 (33%), Positives = 72/201 (35%), Gaps = 26/201 (12%)
Query: 136 PGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPI 195
P P G Q GP GP PG SGP P P P P P P P P P
Sbjct: 34 PPPGMGLNQNRGPM-GPGPGQ-SGPKP-PIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPH 90
Query: 196 PGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPI 255
P P P P P S P+ PGP PG P + + P P SG PG
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG------ 144
Query: 256 PGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSG 315
SGPGP P P PA P P P S +P P G GP
Sbjct: 145 ----SGPGPT--PTPPPAVTSAPPGAPPPTPPSS--------GVPTTPPQAG---GPPPP 187
Query: 316 SVPAPIPGPGSLPAPAPLWPQ 336
P PGPG P P P+
Sbjct: 188 PAAVPGPGPGPKQGPGPGGPK 208
Score = 63.2 bits (152), Expect = 4e-10
Identities = 55/163 (33%), Positives = 62/163 (38%), Gaps = 35/163 (21%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
QQQP P + A PA + S PA PT
Sbjct: 96 QQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT----------------S 139
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIP 146
G P PG GP P P P PA P PG+ P P P + +P+ P GP P +P
Sbjct: 140 GAP----PGSGPGPTPTPPPAVTSAP-PGA-PPPTPPSSGVPT-TPPQAGGPPPPPAAVP 192
Query: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPG 189
GP PGP GP P GP G PG GP PG PG
Sbjct: 193 GPG----PGPKQGPGP-----GGPKGGKMPG---GPKPGGGPG 223
Score = 55.5 bits (132), Expect = 9e-08
Identities = 64/190 (33%), Positives = 67/190 (35%), Gaps = 40/190 (21%)
Query: 171 FSGPNPGPIPGPNPGPI-PGP-ISGPIPGPISVPIPGPI---PGPISGPISGPNPGPIPG 225
F P PG N GP+ PGP SGP P PI P P P P P P P P
Sbjct: 31 FRSPPPGMGLNQNRGPMGPGPGQSGPKP-PIPPPPPHQQQQQPPPQQPPPQQPPPHQ-PP 88
Query: 226 PIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPG 285
P P P P P P S P PGP PG S P PA P
Sbjct: 89 PHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAP---------PASSSAP------- 132
Query: 286 PILSPGRMRSPGSLPG----------LAPILGPGSGPGSGSVP-------APIPGPGSLP 328
P P PGS PG AP P P S VP P P P ++P
Sbjct: 133 PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVP 192
Query: 329 APAPLWPQSP 338
P P Q P
Sbjct: 193 GPGPGPKQGP 202
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/126 (30%), Positives = 40/126 (31%), Gaps = 17/126 (13%)
Query: 226 PIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPG 285
P PG N GP+ GP PG SGP P I P P Q P Q P
Sbjct: 34 PPPGMGLNQNRGPM-----GPGPGQ---------SGPKPPIPPPPPHQQQQQPPPQQPP- 78
Query: 286 PILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLP 345
P P P P P P S P GPG P P S A P
Sbjct: 79 PQQPPPHQPPPHPQPHQQQ--QPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATP 136
Query: 346 DTQLFP 351
T P
Sbjct: 137 PTSGAP 142
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 95.5 bits (236), Expect = 8e-20
Identities = 79/181 (43%), Positives = 86/181 (47%), Gaps = 30/181 (16%)
Query: 166 PISGPFSGPNPGPIPGPNP-GPIPGPISGPIPGPISVPIPGPIPG--PISGPISGPN-PG 221
P S P S P+PGP P GP P P P PGP + PGP PG P P P G
Sbjct: 394 PQSVPPSQIQAPPMPGPPPLGPPPAPPLRP-PGPPTGLPPGPPPGAPPFLRPPGMPGLRG 452
Query: 222 PIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRL 281
P+P +P GP PG PGP GP PGL PGP P GP P + P P+P IP P
Sbjct: 453 PLPRLLP---PGPPPGRPPGPPPGPPPGLPPGPPP---RGPPPRLPP-PAPPGIPPP--- 502
Query: 282 QGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDAS 341
PG MR P L P LGP P PAP+P PG L AP P Q P A
Sbjct: 503 -------RPGMMRPP-----LVPPLGP--APPGLFPPAPLPNPGVLSAP-PNLIQRPKAD 547
Query: 342 D 342
D
Sbjct: 548 D 548
Score = 89.0 bits (219), Expect = 7e-18
Identities = 68/171 (39%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 114 PGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSG 173
P S+P P+QI +P P+PGP P GP P P P PGP +G G
Sbjct: 394 PQSVP-----PSQIQAP---PMPGP---------PPLGPPPAP---PLRPPGPPTGLPPG 433
Query: 174 PNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISG 233
P PG P P +PG + GP+P + PGP PG GP GP PG PGP P
Sbjct: 434 PPPGAPPFLRPPGMPG-LRGPLPRLLP---PGPPPGRPPGPPPGPPPGLPPGPPPRGPPP 489
Query: 234 PNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGP 284
P P P I P PG++ P+ P+ GP P G P PA +P PG L P
Sbjct: 490 RLPPPAPPGIPPPRPGMMRPPLVPPL-GPAP-PGLFP-PAPLPNPGVLSAP 537
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/167 (40%), Positives = 77/167 (46%), Gaps = 24/167 (14%)
Query: 88 IPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPG 147
I A PGP P+ P P + PGP G PGP PG AP P P +PG
Sbjct: 402 IQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPG---------AP---PFLRPPGMPG 449
Query: 148 PFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPI 207
RGP+P + PGP G GP PGP PG PGP P GP P + P P I
Sbjct: 450 -LRGPLPRLLP-----PGPPPGRPPGPPPGPPPGLPPGPPP---RGP-PPRLPPPAPPGI 499
Query: 208 PGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGP 254
P P G + P P+ GP P + P P P PG +S P P LI P
Sbjct: 500 PPPRPGMMRPPLVPPL-GPAPPGLFPPAPLPNPGVLSAP-PNLIQRP 544
Score = 67.0 bits (162), Expect = 3e-11
Identities = 55/156 (35%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q PQ VP + + AP +P P P + P PT G P
Sbjct: 391 QAPPQSVPPSQIQ----APPMPGPPPLGPPPAPP-LRPPGPPTGLPPGPPPGAPPFLRPP 445
Query: 87 GIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIP 146
G+P P P +P P P P + PGP PG PG PGP P P P P P P
Sbjct: 446 GMPGLRGPLPRLLP-PGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRP 504
Query: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGP 182
G R P+ P+ GPAP PG + P PNPG + P
Sbjct: 505 GMMRPPLVPPL-GPAP-PG-LFPPAPLPNPGVLSAP 537
Score = 51.2 bits (121), Expect = 2e-06
Identities = 49/138 (35%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 228 PGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPI 287
P I P P+PGP P L P P P P+ PGP G P P PG P +
Sbjct: 399 PSQIQAP---PMPGP-----PPLGPPPAP-PLRPPGPPTGLPPGPP----PG---APPFL 442
Query: 288 LSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQ---SPDASDFL 344
PG G LP L P PG PG P P P PG P P P P P A +
Sbjct: 443 RPPGMPGLRGPLPRLLP---PGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGI 499
Query: 345 PDTQLFPHFTELLLPLDP 362
P + L+ PL P
Sbjct: 500 PPPRPGMMRPPLVPPLGP 517
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 95.1 bits (235), Expect = 1e-19
Identities = 69/244 (28%), Positives = 95/244 (38%), Gaps = 14/244 (5%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q P R PG+ + VPA Q G +L A P ++ A P A +
Sbjct: 56 QDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAV--AVSPPLEPAAE 113
Query: 87 GIPAALSPGPGPIPA-PIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQI 145
+ L P +P+ P+P PA P P+P P P P PA + +P+ AP+ + P
Sbjct: 114 SLDG-LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPA 172
Query: 146 PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISG-----PIPGPIS 200
P P P P P++ PAP P P P P P P P G G P+ +
Sbjct: 173 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLH 232
Query: 201 VPIPG-PIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPI 259
I G P G + +G + GP+ P SG +P P P P
Sbjct: 233 SGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGD----VPAPCPSPS 288
Query: 260 SGPG 263
+ PG
Sbjct: 289 AAPG 292
Score = 90.1 bits (222), Expect = 3e-18
Identities = 63/210 (30%), Positives = 83/210 (39%), Gaps = 24/210 (11%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-PIPAPIPGPISGPVQIPGPFR 150
L+P P + + P + P S+ G P Q+PS P+PAP P PV P P
Sbjct: 93 LAPRPVAVAVAVSPPLE---PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAP-- 147
Query: 151 GPIPGPISGP--APIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208
P P P++ P AP+ + P P P P P P P P P P P P P P P
Sbjct: 148 APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDA 207
Query: 209 GPISGPISGPNPG-----PIPGPIPGPISG-PNPGPIPGPISGPNPGLIPGPI------- 255
P G N G P+ + ISG P G +G + GP+
Sbjct: 208 APQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAK 267
Query: 256 ---PGPISGPGPIIGPIPSPAQIPGPGRLQ 282
P G + P PSP+ PG G ++
Sbjct: 268 RKRSAPEKSSGDVPAPCPSPSAAPGVGSVE 297
Score = 75.1 bits (183), Expect = 1e-13
Identities = 58/198 (29%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 160 PAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPN 219
P + +S P P + G P P S P+P P S P P P+ P P P
Sbjct: 97 PVAVAVAVSPPLE-PAAESLDGLEEAPEQLP-SVPVPAPASTPPPVPVLAPAPAPAPAPV 154
Query: 220 PGPIPGPI------PGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPA 273
P+ P+ P P P P P P P++ P P P P P P P P P S
Sbjct: 155 AAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Query: 274 QIPGPGRLQGPGPI---LSPGRMRSPGSLPGLAPILGPG----SGP-------------- 312
Q G+ +G P+ L G P + A G SGP
Sbjct: 215 QGANQGQ-RGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAP 273
Query: 313 --GSGSVPAPIPGPGSLP 328
SG VPAP P P + P
Sbjct: 274 EKSSGDVPAPCPSPSAAP 291
Score = 60.5 bits (145), Expect = 3e-09
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 194 PIPGPISVPIPGPIPGPISGPISGPNPGP--IPG-PIPGPISGPNPGPIPGPISGPNPGL 250
P P ++V + P+ P + + G P +P P+P P S P P P+ P P P
Sbjct: 95 PRPVAVAVAVSPPLE-PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 153
Query: 251 IPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGS 310
+ P+ P++ ++ P P+PA P P P P+ +P
Sbjct: 154 VAAPVAAPVAVA--VLAPAPAPAPAPAPA----PAPVAAPA------------------- 188
Query: 311 GPGSGSVPAPIPGPGSLPAPAPLWPQSPDAS 341
PAP P P PAPAP +PDA+
Sbjct: 189 -------PAPAPAPAPAPAPAP----APDAA 208
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 95.1 bits (235), Expect = 1e-19
Identities = 69/244 (28%), Positives = 95/244 (38%), Gaps = 14/244 (5%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q P R PG+ + VPA Q G +L A P ++ A P A +
Sbjct: 56 QDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAV--AVSPPLEPAAE 113
Query: 87 GIPAALSPGPGPIPA-PIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQI 145
+ L P +P+ P+P PA P P+P P P P PA + +P+ AP+ + P
Sbjct: 114 SLDG-LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPA 172
Query: 146 PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISG-----PIPGPIS 200
P P P P P++ PAP P P P P P P P G G P+ +
Sbjct: 173 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLH 232
Query: 201 VPIPG-PIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPI 259
I G P G + +G + GP+ P SG +P P P P
Sbjct: 233 SGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGD----VPAPCPSPS 288
Query: 260 SGPG 263
+ PG
Sbjct: 289 AAPG 292
Score = 90.1 bits (222), Expect = 3e-18
Identities = 63/210 (30%), Positives = 83/210 (39%), Gaps = 24/210 (11%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-PIPAPIPGPISGPVQIPGPFR 150
L+P P + + P + P S+ G P Q+PS P+PAP P PV P P
Sbjct: 93 LAPRPVAVAVAVSPPLE---PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAP-- 147
Query: 151 GPIPGPISGP--APIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208
P P P++ P AP+ + P P P P P P P P P P P P P P P
Sbjct: 148 APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDA 207
Query: 209 GPISGPISGPNPG-----PIPGPIPGPISG-PNPGPIPGPISGPNPGLIPGPI------- 255
P G N G P+ + ISG P G +G + GP+
Sbjct: 208 APQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAK 267
Query: 256 ---PGPISGPGPIIGPIPSPAQIPGPGRLQ 282
P G + P PSP+ PG G ++
Sbjct: 268 RKRSAPEKSSGDVPAPCPSPSAAPGVGSVE 297
Score = 75.1 bits (183), Expect = 1e-13
Identities = 58/198 (29%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 160 PAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPN 219
P + +S P P + G P P S P+P P S P P P+ P P P
Sbjct: 97 PVAVAVAVSPPLE-PAAESLDGLEEAPEQLP-SVPVPAPASTPPPVPVLAPAPAPAPAPV 154
Query: 220 PGPIPGPI------PGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPA 273
P+ P+ P P P P P P P++ P P P P P P P P P S
Sbjct: 155 AAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Query: 274 QIPGPGRLQGPGPI---LSPGRMRSPGSLPGLAPILGPG----SGP-------------- 312
Q G+ +G P+ L G P + A G SGP
Sbjct: 215 QGANQGQ-RGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAP 273
Query: 313 --GSGSVPAPIPGPGSLP 328
SG VPAP P P + P
Sbjct: 274 EKSSGDVPAPCPSPSAAP 291
Score = 60.5 bits (145), Expect = 3e-09
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 194 PIPGPISVPIPGPIPGPISGPISGPNPGP--IPG-PIPGPISGPNPGPIPGPISGPNPGL 250
P P ++V + P+ P + + G P +P P+P P S P P P+ P P P
Sbjct: 95 PRPVAVAVAVSPPLE-PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 153
Query: 251 IPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGS 310
+ P+ P++ ++ P P+PA P P P P+ +P
Sbjct: 154 VAAPVAAPVAVA--VLAPAPAPAPAPAPA----PAPVAAPA------------------- 188
Query: 311 GPGSGSVPAPIPGPGSLPAPAPLWPQSPDAS 341
PAP P P PAPAP +PDA+
Sbjct: 189 -------PAPAPAPAPAPAPAP----APDAA 208
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 95.1 bits (235), Expect = 1e-19
Identities = 69/244 (28%), Positives = 95/244 (38%), Gaps = 14/244 (5%)
Query: 27 QQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQK 86
Q P R PG+ + VPA Q G +L A P ++ A P A +
Sbjct: 67 QDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAV--AVSPPLEPAAE 124
Query: 87 GIPAALSPGPGPIPA-PIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQI 145
+ L P +P+ P+P PA P P+P P P P PA + +P+ AP+ + P
Sbjct: 125 SLDG-LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPA 183
Query: 146 PGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISG-----PIPGPIS 200
P P P P P++ PAP P P P P P P P G G P+ +
Sbjct: 184 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLH 243
Query: 201 VPIPG-PIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPI 259
I G P G + +G + GP+ P SG +P P P P
Sbjct: 244 SGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGD----VPAPCPSPS 299
Query: 260 SGPG 263
+ PG
Sbjct: 300 AAPG 303
Score = 90.1 bits (222), Expect = 3e-18
Identities = 63/210 (30%), Positives = 83/210 (39%), Gaps = 24/210 (11%)
Query: 92 LSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPS-PIPAPIPGPISGPVQIPGPFR 150
L+P P + + P + P S+ G P Q+PS P+PAP P PV P P
Sbjct: 104 LAPRPVAVAVAVSPPLE---PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAP-- 158
Query: 151 GPIPGPISGP--APIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208
P P P++ P AP+ + P P P P P P P P P P P P P P P
Sbjct: 159 APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDA 218
Query: 209 GPISGPISGPNPG-----PIPGPIPGPISG-PNPGPIPGPISGPNPGLIPGPI------- 255
P G N G P+ + ISG P G +G + GP+
Sbjct: 219 APQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAK 278
Query: 256 ---PGPISGPGPIIGPIPSPAQIPGPGRLQ 282
P G + P PSP+ PG G ++
Sbjct: 279 RKRSAPEKSSGDVPAPCPSPSAAPGVGSVE 308
Score = 75.1 bits (183), Expect = 1e-13
Identities = 58/198 (29%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 160 PAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPN 219
P + +S P P + G P P S P+P P S P P P+ P P P
Sbjct: 108 PVAVAVAVSPPLE-PAAESLDGLEEAPEQLP-SVPVPAPASTPPPVPVLAPAPAPAPAPV 165
Query: 220 PGPIPGPI------PGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPA 273
P+ P+ P P P P P P P++ P P P P P P P P P S
Sbjct: 166 AAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 225
Query: 274 QIPGPGRLQGPGPI---LSPGRMRSPGSLPGLAPILGPG----SGP-------------- 312
Q G+ +G P+ L G P + A G SGP
Sbjct: 226 QGANQGQ-RGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAP 284
Query: 313 --GSGSVPAPIPGPGSLP 328
SG VPAP P P + P
Sbjct: 285 EKSSGDVPAPCPSPSAAP 302
Score = 60.5 bits (145), Expect = 3e-09
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 194 PIPGPISVPIPGPIPGPISGPISGPNPGP--IPG-PIPGPISGPNPGPIPGPISGPNPGL 250
P P ++V + P+ P + + G P +P P+P P S P P P+ P P P
Sbjct: 106 PRPVAVAVAVSPPLE-PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 164
Query: 251 IPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGS 310
+ P+ P++ ++ P P+PA P P P P+ +P
Sbjct: 165 VAAPVAAPVAVA--VLAPAPAPAPAPAPA----PAPVAAPA------------------- 199
Query: 311 GPGSGSVPAPIPGPGSLPAPAPLWPQSPDAS 341
PAP P P PAPAP +PDA+
Sbjct: 200 -------PAPAPAPAPAPAPAP----APDAA 219
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 95.1 bits (235), Expect = 1e-19
Identities = 79/221 (35%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 78 GGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPL-PGSIPGPIPGPAQIPSPIPAPIP 136
G PG ++ P G G P +PG + PGP PG P P P P P P P
Sbjct: 187 GPPGGSSRAAFPQG-GRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGP-P 244
Query: 137 GPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPG-PISGPI 195
GP PGP P PG + +P P++GP PN G P P P PG P P
Sbjct: 245 GP-------PGPPGPPPPGQV-----LPPPLAGP---PNRGDRPPP-PVLFPGQPFGQPP 288
Query: 196 PGPISVPIPGPIPGPISGPISGPNPGPI-PGPIPGPISGPNPGPIPGPISGPNPGLIPGP 254
GP+ P P+PG GP GP P P P PGP PGP+ P++ P +PGP
Sbjct: 289 LGPLPPGPPPPVPG--YGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
Query: 255 IPG---PISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGR 292
PG P P P P+ + +P +GP P GR
Sbjct: 347 PPGAPPPAPHVNPAFFPPPTNSGMP-TSDSRGPPPTDPYGR 386
Score = 87.4 bits (215), Expect = 2e-17
Identities = 75/189 (39%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGP 206
G RG PG + G PGP +GP P P P P P GP GP PGP P PG
Sbjct: 201 GRGRGRFPGAVPGGDRFPGP-AGPGGPPPPFPAGQTPPRPPLGP-PGP-PGPPGPPPPGQ 257
Query: 207 I-PGPISGPISGPNPGPIPGP---IPG-PISGPNPGPIPGPISGPNPGLIPGPIPGPISG 261
+ P P++GP PN G P P PG P P GP+P P PG GP PGP
Sbjct: 258 VLPPPLAGP---PNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGY--GPPPGP--- 309
Query: 262 PGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPI 321
P P GP P P GP + PGP+ P + P LPG PG+ P PAP
Sbjct: 310 PPPQQGPPPPP----GPFPPRPPGPLGPPLTLAPPPHLPGPP----PGAPP-----PAPH 356
Query: 322 PGPGSLPAP 330
P P P
Sbjct: 357 VNPAFFPPP 365
Score = 67.4 bits (163), Expect = 2e-11
Identities = 64/171 (37%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 168 SGPFSGPNP-GPIPGPNPGPIP--GPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIP 224
SG SG GP G + P G G PG +VP PGP +GP P P P
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPG--AVPGGDRFPGP-AGPGGPPPPFPAG 233
Query: 225 GPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGP 284
P P GP PGP PGP P PG + +P P++GP P P PG Q P
Sbjct: 234 QTPPRPPLGP-PGP-PGPPGPPPPGQV---LPPPLAGPPNRGDRPPPPVLFPGQPFGQPP 288
Query: 285 GPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWP 335
L PG P +PG P GP P P P PGP P PL P
Sbjct: 289 LGPLPPG---PPPPVPGYGPPPGP---PPPQQGPPPPPGPFPPRPPGPLGP 333
Score = 62.0 bits (149), Expect = 9e-10
Identities = 70/233 (30%), Positives = 86/233 (36%), Gaps = 50/233 (21%)
Query: 26 LQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS-GILPAAEPTICSLHQAWGG---PG 81
+Q + GQ +A P ++ A+ PQ G G P A P GG PG
Sbjct: 169 MQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVP---------GGDRFPG 219
Query: 82 CRAQKGIPAALSPGPGPIPAPI--PGPAQIPGPLPGS--IPGPIPGPAQI---------- 127
G P G P P+ PGP PGP P +P P+ GP
Sbjct: 220 PAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLF 279
Query: 128 -----------PSPIPAPIPGPISGPVQ-IPGPFRGPIPGPISGPAPIPGPISGPFSGPN 175
P P P P P GP P P +GP P P P PGP+ P +
Sbjct: 280 PGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAP 339
Query: 176 PGPIPGPNPG-PIPGPISGP--IPGPISVPIP-----GPIPGPISGPISGPNP 220
P +PGP PG P P P P P P + +P GP P + P P P
Sbjct: 340 PPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGP---PPTDPYGRPPP 389
Score = 52.4 bits (124), Expect = 7e-07
Identities = 57/190 (30%), Positives = 68/190 (35%), Gaps = 31/190 (16%)
Query: 32 RVPGQRGRGARAAPLVPAASASAPQRGPSGIL--PAAEPTICSLHQAWGGPGCRAQKGIP 89
R PG G G P + P GP G P P L GP R + P
Sbjct: 216 RFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPP 275
Query: 90 AALSPG-------------------PGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSP 130
L PG PG P P P P P G P P P P + P P
Sbjct: 276 PVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP-----PPPQQGPPPPPGPFPPRPPGP 330
Query: 131 IPAPIPGPISGPVQIPGPFRG-PIPGPISGPAPIPGPI-SGPFSGPNPGPIPGPNPGPIP 188
+ P+ ++ P +PGP G P P P PA P P SG + + GP P +P P
Sbjct: 331 LGPPL--TLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGP-PPTDPYGRP 387
Query: 189 GPISGPIPGP 198
P GP
Sbjct: 388 PPYDRGDYGP 397
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 244 SGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRM--RSPGSLPG 301
+GP G P G G G +P + PGP GP P G+ R P PG
Sbjct: 186 AGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPG 245
Query: 302 LAPILGPGSGPGSGSVPAPIPGP---GSLPAPAPLWPQSP 338
P PG P +P P+ GP G P P L+P P
Sbjct: 246 --PPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP 283
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.144 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,643,984
Number of Sequences: 37866
Number of extensions: 3743125
Number of successful extensions: 73040
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 1658
Number of HSP's that attempted gapping in prelim test: 14898
Number of HSP's gapped (non-prelim): 20102
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.