Guide to the Human Genome
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Name: PFN3 Sequence: fasta or formatted (137aa) NCBI GI: 71274140
Description:

profilin 3

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         14           2
 C cysteine            2.9          4           2
 D aspartate           7.3         10           2
 E glutamate           2.2          3           1
 F phenylalanine       0.7          1           1
 G glycine            13.9         19           2
 H histidine           3.6          5           1
 I isoleucine          5.1          7           1
 K lysine              2.2          3           1
 L leucine            11.7         16           2
 M methionine          2.2          3           1
 N asparagine          1.5          2           1
 P proline             2.9          4           1
 Q glutamine           2.9          4           1
 R arginine           10.9         15           2
 S serine              3.6          5           1
 T threonine           2.9          4           1
 V valine             10.9         15           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   profilin 3 
PFN1                  0.362   profilin 1 
PFN2                  0.358   profilin 2 isoform b 
PFN2                  0.343   profilin 2 isoform a 
LOC100132184          0.067   PREDICTED: similar to PDE4DIP protein 
NTN5                  0.039   netrin 5 
GGT2                  0.020   PREDICTED: gamma-glutamyltransferase 2 isoform 1 [H...
GGT1                  0.016   gamma-glutamyltransferase 1 precursor 
GGT1                  0.016   gamma-glutamyltransferase 1 precursor 
GGT1                  0.016   gamma-glutamyltransferase 1 precursor 
GGT1                  0.016   gamma-glutamyltransferase 1 precursor 
GGT2                  0.016   PREDICTED: gamma-glutamyltransferase 2 isoform 3 [H...
LOC100131773          0.012   PREDICTED: similar to mCG116201 
TBX21                 0.012   T-box 21 
TNK2                  0.012   tyrosine kinase, non-receptor, 2 isoform 2 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
LOC100133405          0.004   PREDICTED: hypothetical protein 
PCDH8                 0.004   protocadherin 8 isoform 2 precursor 
PCDH8                 0.004   protocadherin 8 isoform 1 precursor 
NIPBL                 0.004   delangin isoform B 
NIPBL                 0.004   delangin isoform A 
TMEM132A              0.004   transmembrane protein 132A isoform a 
TMEM132A              0.004   transmembrane protein 132A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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