Guide to the Human Genome
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Name: PFN1 Sequence: fasta or formatted (140aa) NCBI GI: 4826898
Description:

profilin 1

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         10           2
 C cysteine            2.1          3           1
 D aspartate           6.4          9           1
 E glutamate           2.9          4           1
 F phenylalanine       2.9          4           1
 G glycine            11.4         16           2
 H histidine           1.4          2           1
 I isoleucine          3.6          5           1
 K lysine              7.1         10           2
 L leucine             8.6         12           2
 M methionine          3.6          5           1
 N asparagine          4.3          6           1
 P proline             2.9          4           1
 Q glutamine           2.9          4           1
 R arginine            3.6          5           2
 S serine              7.1         10           2
 T threonine           7.9         11           1
 V valine              9.3         13           1
 W tryptophan          1.4          2           1
 Y tyrosine            3.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   profilin 1 
PFN2                  0.628   profilin 2 isoform b 
PFN2                  0.613   profilin 2 isoform a 
PFN3                  0.352   profilin 3 
LOC100132184          0.264   PREDICTED: similar to PDE4DIP protein 
PSG7                  0.019   pregnancy specific beta-1-glycoprotein 7 precursor ...
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC100294249          0.011   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.011   PREDICTED: hypothetical protein 
LOC100294204          0.011   PREDICTED: hypothetical protein 
LOC100294136          0.011   PREDICTED: hypothetical protein 
LOC100294091          0.011   PREDICTED: hypothetical protein 
LOC730401             0.011   PREDICTED: hypothetical protein 
LOC100294501          0.011   PREDICTED: hypothetical protein 
BNC2                  0.011   basonuclin 2 
GPR124                0.008   G protein-coupled receptor 124 
PSG4                  0.008   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG4                  0.008   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
WIPI1                 0.008   WD repeat domain, phosphoinositide interacting 1 [H...
PSG8                  0.008   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG8                  0.008   pregnancy specific beta-1-glycoprotein 8 isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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