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Search of human proteins with 7019471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019471 NTF2-like export factor 1 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019471 NTF2-like export factor 1 [Homo sapiens] 286 4e-78
gi|21361724 nuclear transport factor 2-like export factor 2 [Hom... 229 6e-61
gi|5031985 nuclear transport factor 2 [Homo sapiens] 49 1e-06
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 46 1e-05
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 46 1e-05
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 46 1e-05
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 41 3e-04
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 41 3e-04
gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Ho... 39 0.001
gi|169160905 PREDICTED: similar to nuclear transport factor 2 [H... 38 0.002
gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Ho... 38 0.002
gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens] 26 9.3
gi|226442779 jumonji domain containing 1A [Homo sapiens] 26 9.3
gi|20357522 jumonji domain containing 1A [Homo sapiens] 26 9.3
>gi|7019471 NTF2-like export factor 1 [Homo sapiens]
Length = 140
Score = 286 bits (732), Expect = 4e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE 60
MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
Sbjct: 1 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE 60
Query: 61 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS 120
FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
Sbjct: 61 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS 120
Query: 121 PSNTVWKIASDCFRFQDWAS 140
PSNTVWKIASDCFRFQDWAS
Sbjct: 121 PSNTVWKIASDCFRFQDWAS 140
>gi|21361724 nuclear transport factor 2-like export factor 2 [Homo
sapiens]
Length = 197
Score = 229 bits (584), Expect = 6e-61
Identities = 104/138 (75%), Positives = 126/138 (91%)
Query: 3 SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFF 62
S+DFKTYVDQACRAAEEFVN+YY TMDKRRR L+RLY+ ATL+WNGNAVSG ++L+ FF
Sbjct: 59 SLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFF 118
Query: 63 EMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPS 122
+ LPSSEFQ++++DCQPVH++AT SQTTVLVV G+VKF+GNKQ FNQNF+LTAQ++P+
Sbjct: 119 DTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPN 178
Query: 123 NTVWKIASDCFRFQDWAS 140
NTVWKIASDCFRFQDW+S
Sbjct: 179 NTVWKIASDCFRFQDWSS 196
>gi|5031985 nuclear transport factor 2 [Homo sapiens]
Length = 127
Score = 48.9 bits (115), Expect = 1e-06
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 20 FVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVV--DC 77
F+ YY D R L +Y+ + L W G G+ ++ E LP + Q S+ D
Sbjct: 14 FIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDH 73
Query: 78 QPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFR 134
QP D + ++ ++ G +K + + F+Q F+L N W +D FR
Sbjct: 74 QPTPD------SCIISMVVGQLKADEDPIMGFHQMFLL----KNINDAWVCTNDMFR 120
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 45.8 bits (107), Expect = 1e-05
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 19 EFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSG--QESL---SEFFEMLPSSEFQIS 73
EFV YYT ++K L R Y ++ V G SG QE++ ++ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 74 VVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCF 133
+ V AT S V+V + G + G +R F Q F+L + S N + + +D F
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY-VHNDMF 131
Query: 134 RFQD 137
R++D
Sbjct: 132 RYED 135
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 45.8 bits (107), Expect = 1e-05
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 19 EFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSG--QESL---SEFFEMLPSSEFQIS 73
EFV YYT ++K L R Y ++ V G SG QE++ ++ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 74 VVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCF 133
+ V AT S V+V + G + G +R F Q F+L + S N + + +D F
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY-VHNDMF 131
Query: 134 RFQD 137
R++D
Sbjct: 132 RYED 135
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 45.8 bits (107), Expect = 1e-05
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 19 EFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSG--QESL---SEFFEMLPSSEFQIS 73
EFV YYT ++K L R Y ++ V G SG QE++ ++ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 74 VVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCF 133
+ V AT S V+V + G + G +R F Q F+L + S N + + +D F
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY-VHNDMF 131
Query: 134 RFQD 137
R++D
Sbjct: 132 RYED 135
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 41.2 bits (95), Expect = 3e-04
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 19 EFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLPSSEF 70
EFV YYT +++ +L R Y ++ V G +AV GQ+ E + S F
Sbjct: 14 EFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK---EIHRKVMSQNF 70
Query: 71 QISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIAS 130
+ V AT + V+V + G + R F Q F+L + S +N + + +
Sbjct: 71 TNCHTKIRHVDAHATLND-GVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY-VHN 128
Query: 131 DCFRFQD 137
D FR+QD
Sbjct: 129 DIFRYQD 135
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 41.2 bits (95), Expect = 3e-04
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 19 EFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLPSSEF 70
EFV YYT +++ +L R Y ++ V G +AV GQ+ E + S F
Sbjct: 14 EFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK---EIHRKVMSQNF 70
Query: 71 QISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIAS 130
+ V AT + V+V + G + R F Q F+L + S +N + + +
Sbjct: 71 TNCHTKIRHVDAHATLND-GVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY-VHN 128
Query: 131 DCFRFQD 137
D FR+QD
Sbjct: 129 DIFRYQD 135
>gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 24 YYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVV--DCQPVH 81
YY D R L +Y+ + L W G+ + E LP + Q S+ D QP
Sbjct: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLTAQDHQPTP 77
Query: 82 DEATPSQTTVLVVICGSVKFEGNKQRDFNQNFIL 115
D + ++ V+ G +K + + + F+Q F+L
Sbjct: 78 D------SCIIGVVVGQLKADEDPIKGFHQMFLL 105
>gi|169160905 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 340
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 24 YYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISV--VDCQPVH 81
YY D R L +Y+ + L W G+ + E LP + Q S+ D QP
Sbjct: 232 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLRAQDHQPTP 291
Query: 82 DEATPSQTTVLVVICGSVKFEGNKQRDFNQNFIL 115
D + ++ V+ G +K + + + F+Q F+L
Sbjct: 292 D------SCIIGVVVGQLKADEDPIKGFHQMFLL 319
>gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 24 YYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISV--VDCQPVH 81
YY D R L +Y+ + L W G+ + E LP + Q S+ D QP
Sbjct: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLRAQDHQPTP 77
Query: 82 DEATPSQTTVLVVICGSVKFEGNKQRDFNQNFIL 115
D + ++ V+ G +K + + + F+Q F+L
Sbjct: 78 D------SCIIGVVVGQLKADEDPIKGFHQMFLL 105
>gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens]
Length = 569
Score = 26.2 bits (56), Expect = 9.3
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 18 EEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDC 77
E+ V V + K RRL+ L T+ W G S +E ++ + L ++ +++
Sbjct: 434 EDIVEVINENVKKSRRLIIILVRETSGFSWLGG--SSEEQIA-MYNALVQDGIKVVLLEL 490
Query: 78 QPVHD-EATPSQTTVLVVICGSVKFEGNKQRDFNQ 111
+ + D E P + G++++ G DF Q
Sbjct: 491 EKIQDYEKMPESIKFIKQKHGAIRWSG----DFTQ 521
>gi|226442779 jumonji domain containing 1A [Homo sapiens]
Length = 1321
Score = 26.2 bits (56), Expect = 9.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 46 VWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEA 84
+W+ A E + EF + + + Q + D P+HD++
Sbjct: 1173 LWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQS 1211
>gi|20357522 jumonji domain containing 1A [Homo sapiens]
Length = 1321
Score = 26.2 bits (56), Expect = 9.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 46 VWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEA 84
+W+ A E + EF + + + Q + D P+HD++
Sbjct: 1173 LWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQS 1211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,321
Number of Sequences: 37866
Number of extensions: 176774
Number of successful extensions: 364
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 14
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.