Search of human proteins with 6978649

Search of human proteins with 6978649

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6978649 choline kinase beta [Homo sapiens]
         (395 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6978649 choline kinase beta [Homo sapiens]                         808   0.0  
gi|47078278 choline kinase alpha isoform b [Homo sapiens]             451   e-127
gi|47078276 choline kinase alpha isoform a [Homo sapiens]             444   e-125
gi|186659525 ethanolamine kinase 2 [Homo sapiens]                     162   6e-40
gi|10092615 ethanolamine kinase 1 isoform A [Homo sapiens]            162   6e-40
gi|55926200 potassium channel tetramerisation domain containing ...    30   2.9  
gi|54792098 erbB-2 isoform b [Homo sapiens]                            30   5.0  
gi|54792096 erbB-2 isoform a [Homo sapiens]                            30   5.0  
gi|7657526 ribosomal protein S6 kinase polypeptide 6 [Homo sapiens]    30   5.0  
gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]         30   5.0  
gi|118572606 hemicentin 1 [Homo sapiens]                               29   6.5  
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    29   6.5  
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    29   6.5  
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    29   6.5  
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    29   6.5  
gi|22749539 hypothetical protein LOC257169 [Homo sapiens]              29   6.5  
gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo ...    29   8.5  
gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo ...    29   8.5  
gi|32698700 PHD finger protein 8 [Homo sapiens]                        29   8.5  
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo...    29   8.5  
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo...    29   8.5  
gi|109715862 gem (nuclear organelle) associated protein 8 [Homo ...    29   8.5  
gi|109715864 gem (nuclear organelle) associated protein 8 [Homo ...    29   8.5  
gi|8923481 gem (nuclear organelle) associated protein 8 [Homo sa...    29   8.5  

>gi|6978649 choline kinase beta [Homo sapiens]
          Length = 395

 Score =  808 bits (2087), Expect = 0.0
 Identities = 395/395 (100%), Positives = 395/395 (100%)

Query: 1   MAAEATAVAGSGAVGGCLAKDGLQQSKCPDTTPKRRRASSLSRDAERRAYQWCREYLGGA 60
           MAAEATAVAGSGAVGGCLAKDGLQQSKCPDTTPKRRRASSLSRDAERRAYQWCREYLGGA
Sbjct: 1   MAAEATAVAGSGAVGGCLAKDGLQQSKCPDTTPKRRRASSLSRDAERRAYQWCREYLGGA 60

Query: 61  WRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLES 120
           WRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLES
Sbjct: 61  WRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLES 120

Query: 121 VMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP 180
           VMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP
Sbjct: 121 VMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP 180

Query: 181 FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCH 240
           FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCH
Sbjct: 181 FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCH 240

Query: 241 NDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARP 300
           NDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARP
Sbjct: 241 NDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARP 300

Query: 301 TDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQ 360
           TDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQ
Sbjct: 301 TDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQ 360

Query: 361 ASMSTIEFGYLDYAQSRFQFYFQQKGQLTSVHSSS 395
           ASMSTIEFGYLDYAQSRFQFYFQQKGQLTSVHSSS
Sbjct: 361 ASMSTIEFGYLDYAQSRFQFYFQQKGQLTSVHSSS 395


>gi|47078278 choline kinase alpha isoform b [Homo sapiens]
          Length = 439

 Score =  451 bits (1159), Expect = e-127
 Identities = 221/349 (63%), Positives = 280/349 (80%), Gaps = 7/349 (2%)

Query: 47  RRAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLY 106
           RRAY WC+E+L GAWR ++ +E  +  + GGLSN+LF+CSLPD   ++G+EPR+VLLRLY
Sbjct: 89  RRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLY 148

Query: 107 GAILQ-GVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSA 165
           GAILQ G +++VLESVMFAILAERSLGP+LYG+FP+GRLEQ+IPSR L T+EL  P +SA
Sbjct: 149 GAILQMGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISA 208

Query: 166 AIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPT---GLPEMNLLEMYSLKDEM 222
            IA KMA FHGM+MPF KEP WLFGTME+YLK++  +  T    + +++ L  Y+L  E+
Sbjct: 209 EIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLEL 268

Query: 223 GNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD--SLMLVDFEYSSYNYRGFDIGNH 280
            NLR LLESTPSPVVFCHND QEGNILLL   EN++   LML+DFEYSSYNYRGFDIGNH
Sbjct: 269 ENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGNH 328

Query: 281 FCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL-AEAKKGETLSQEEQRKLEEDLL 339
           FCEW+YDY++E++PF++A    YPT++QQLHFI  YL A     E LS EE+  ++E++L
Sbjct: 329 FCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEML 388

Query: 340 VEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQL 388
           +EV+R+ALASHF WGLWSI+QA +S+IEFGY+DYAQ+RF  YF QK +L
Sbjct: 389 LEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL 437


>gi|47078276 choline kinase alpha isoform a [Homo sapiens]
          Length = 457

 Score =  444 bits (1141), Expect = e-125
 Identities = 221/367 (60%), Positives = 280/367 (76%), Gaps = 25/367 (6%)

Query: 47  RRAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLY 106
           RRAY WC+E+L GAWR ++ +E  +  + GGLSN+LF+CSLPD   ++G+EPR+VLLRLY
Sbjct: 89  RRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLY 148

Query: 107 GAILQ-------------------GVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQY 147
           GAILQ                   G +++VLESVMFAILAERSLGP+LYG+FP+GRLEQ+
Sbjct: 149 GAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQF 208

Query: 148 IPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPT-- 205
           IPSR L T+EL  P +SA IA KMA FHGM+MPF KEP WLFGTME+YLK++  +  T  
Sbjct: 209 IPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEE 268

Query: 206 -GLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD--SLML 262
             + +++ L  Y+L  E+ NLR LLESTPSPVVFCHND QEGNILLL   EN++   LML
Sbjct: 269 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLML 328

Query: 263 VDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL-AEAK 321
           +DFEYSSYNYRGFDIGNHFCEW+YDY++E++PF++A    YPT++QQLHFI  YL A   
Sbjct: 329 IDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQN 388

Query: 322 KGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFY 381
             E LS EE+  ++E++L+EV+R+ALASHF WGLWSI+QA +S+IEFGY+DYAQ+RF  Y
Sbjct: 389 DFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAY 448

Query: 382 FQQKGQL 388
           F QK +L
Sbjct: 449 FHQKRKL 455


>gi|186659525 ethanolamine kinase 2 [Homo sapiens]
          Length = 386

 Score =  162 bits (409), Expect = 6e-40
 Identities = 112/349 (32%), Positives = 183/349 (52%), Gaps = 40/349 (11%)

Query: 55  EYLGGAWRRVQ-------PEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYG 107
           + L GA R +Q       PE++R    + G++N L  C + + +         VL+R+YG
Sbjct: 62  DILPGALRLIQELRPHWKPEQVRTKRFTDGITNKLVACYVEEDMQDC------VLVRVYG 115

Query: 108 AILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAI 167
              + +     E   F +L   S  P+LY  F  G   +Y+    L+ + +REP L   I
Sbjct: 116 ERTELLVDRENEVRNFQLLRAHSCAPKLYCTFQNGLCYEYMQGVALEPEHIREPRLFRLI 175

Query: 168 ATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQ-DLPPTGLPEMNLLEMYSLKDEMGNLR 226
           A +MA+ H +    +     L+  M  Y   ++ ++ P+   ++  +E+  L+ E+  L+
Sbjct: 176 ALEMAKIHTIHANGSLPKPILWHKMHNYFTLVKNEINPSLSADVPKVEV--LERELAWLK 233

Query: 227 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCEWV- 285
           + L    SPVVFCHND+   NI+  S   +   +  +D+EY+ YNY+ FDIGNHF E+  
Sbjct: 234 EHLSQLESPVVFCHNDLLCKNIIYDSIKGH---VRFIDYEYAGYNYQAFDIGNHFNEFAG 290

Query: 286 ---YDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVEV 342
               DY              YP +E QL ++ +YL +A+KG  ++  E ++L     V+V
Sbjct: 291 VNEVDYCL------------YPARETQLQWLHYYL-QAQKGMAVTPREVQRL----YVQV 333

Query: 343 SRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSV 391
           +++ALASHFFW LW+++Q   STI+F +L YA  RF  YF+ K Q +++
Sbjct: 334 NKFALASHFFWALWALIQNQYSTIDFDFLRYAVIRFNQYFKVKPQASAL 382


>gi|10092615 ethanolamine kinase 1 isoform A [Homo sapiens]
          Length = 452

 Score =  162 bits (409), Expect = 6e-40
 Identities = 108/341 (31%), Positives = 171/341 (50%), Gaps = 42/341 (12%)

Query: 66  PEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAI 125
           P+E+ +   + G++N L  C + + +  V      VL+R+YG   + +     E   F +
Sbjct: 135 PQEVTLQLFTDGITNKLIGCYVGNTMEDV------VLVRIYGNKTELLVDRDEEVKSFRV 188

Query: 126 LAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP---FT 182
           L      PQLY  F  G   ++I    L  + +  P +   IA ++A+ H +        
Sbjct: 189 LQAHGCAPQLYCTFNNGLCYEFIQGEALDPKHVCNPAIFRLIARQLAKIHAIHAHNGWIP 248

Query: 183 KEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYS--------LKDEMGNLRKLLESTPS 234
           K   WL   M +Y   I    PTG  + ++ + +         L++EM  ++++L +  S
Sbjct: 249 KSNLWL--KMGKYFSLI----PTGFADEDINKRFLSDIPSSQILQEEMTWMKEILSNLGS 302

Query: 235 PVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRGFDIGNHFCEWV----YDYTH 290
           PVV CHND+   NI+     E    +  +D+EYS YNY  +DIGNHF E+      DY+ 
Sbjct: 303 PVVLCHNDLLCKNIIY---NEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSL 359

Query: 291 EEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVEVSRYALASH 350
                       YP +E Q  ++R YL   K+ +    E   K  E L ++V+++ALASH
Sbjct: 360 ------------YPDRELQSQWLRAYLEAYKEFKGFGTEVTEKEVEILFIQVNQFALASH 407

Query: 351 FFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSV 391
           FFWGLW+++QA  STIEF +L YA  RF  YF+ K ++T++
Sbjct: 408 FFWGLWALIQAKYSTIEFDFLGYAIVRFNQYFKMKPEVTAL 448


>gi|55926200 potassium channel tetramerisation domain containing 16
           [Homo sapiens]
          Length = 428

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 181 FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLL---ESTPSPVV 237
           F     +LF  +  YL+  Q + P   PE   L+  +   ++ +L KLL   E   SP  
Sbjct: 74  FIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTPDEIKQSPDE 133

Query: 238 FCHNDIQEGN 247
           FCH+D ++ +
Sbjct: 134 FCHSDFEDAS 143


>gi|54792098 erbB-2 isoform b [Homo sapiens]
          Length = 1225

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 64  VQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVM 122
           +QPE+L+V+     ++  L+  + PD LP +       ++R  G IL  G  SL L+ + 
Sbjct: 362 LQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIR--GRILHNGAYSLTLQGLG 419

Query: 123 FAILAERSL 131
            + L  RSL
Sbjct: 420 ISWLGLRSL 428


>gi|54792096 erbB-2 isoform a [Homo sapiens]
          Length = 1255

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 64  VQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVM 122
           +QPE+L+V+     ++  L+  + PD LP +       ++R  G IL  G  SL L+ + 
Sbjct: 392 LQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIR--GRILHNGAYSLTLQGLG 449

Query: 123 FAILAERSL 131
            + L  RSL
Sbjct: 450 ISWLGLRSL 458


>gi|7657526 ribosomal protein S6 kinase polypeptide 6 [Homo sapiens]
          Length = 745

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 240 HNDIQEGNILLLSEPENADSLMLVDFEYS 268
           H D++  NIL + E  +ADS+ + DF ++
Sbjct: 541 HRDLKPSNILYMDESASADSIRICDFGFA 569


>gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]
          Length = 2286

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 3/35 (8%)

Query: 13   AVGGCLAKDGLQQSKCPDTTPKRRR-ASSLSRDAE 46
            AV  C+ KDGL++S  P +TP RRR AS LS++AE
Sbjct: 2006 AVYHCM-KDGLRRS-APGSTPVRRRGASQLSQEAE 2038


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 190  GTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHND------- 242
            GT ER       +PP    +  +  +  L +++ NL   +E TPSP++  + D       
Sbjct: 1345 GTTERKYNLKVHVPPVIKDKEQVTNVSVLLNQLTNLFCEVEGTPSPIIMWYKDNVQVTES 1404

Query: 243  -----IQEGNILLL--SEPENAD--SLMLVDFEYSSYNYRGFDI 277
                 +  G IL L  + PE+A   S   ++   +S  Y   D+
Sbjct: 1405 STIQTVNNGKILKLFRATPEDAGRYSCKAINIAGTSQKYFNIDV 1448


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 28  CP--DTTPKRRRASSLSRDAERRAYQW-CREYLGGAWRRVQPEELRVYPVSGGLSNLLFR 84
           CP  D+ P+ +R SSL  D  R   QW CRE  G  W    P  L + P   G S     
Sbjct: 341 CPPLDSLPELQRESSLE-DPSRYKPQWECRENSGNLWAFESP-VLDLNPELSGTS----- 393

Query: 85  CSLPDHLPSVGEEP 98
              P+ +P   E P
Sbjct: 394 ---PECVPPASETP 404


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 28  CP--DTTPKRRRASSLSRDAERRAYQW-CREYLGGAWRRVQPEELRVYPVSGGLSNLLFR 84
           CP  D+ P+ +R SSL  D  R   QW CRE  G  W    P  L + P   G S     
Sbjct: 316 CPPLDSLPELQRESSLE-DPSRYKPQWECRENSGNLWAFESP-VLDLNPELSGTS----- 368

Query: 85  CSLPDHLPSVGEEP 98
              P+ +P   E P
Sbjct: 369 ---PECVPPASETP 379


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 28  CP--DTTPKRRRASSLSRDAERRAYQW-CREYLGGAWRRVQPEELRVYPVSGGLSNLLFR 84
           CP  D+ P+ +R SSL  D  R   QW CRE  G  W    P  L + P   G S     
Sbjct: 354 CPPLDSLPELQRESSLE-DPSRYKPQWECRENSGNLWAFESP-VLDLNPELSGTS----- 406

Query: 85  CSLPDHLPSVGEEP 98
              P+ +P   E P
Sbjct: 407 ---PECVPPASETP 417


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 28  CP--DTTPKRRRASSLSRDAERRAYQW-CREYLGGAWRRVQPEELRVYPVSGGLSNLLFR 84
           CP  D+ P+ +R SSL  D  R   QW CRE  G  W    P  L + P   G S     
Sbjct: 389 CPPLDSLPELQRESSLE-DPSRYKPQWECRENSGNLWAFESP-VLDLNPELSGTS----- 441

Query: 85  CSLPDHLPSVGEEP 98
              P+ +P   E P
Sbjct: 442 ---PECVPPASETP 452


>gi|22749539 hypothetical protein LOC257169 [Homo sapiens]
          Length = 461

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 152 PLKTQELREPVLSAA--IATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPE 209
           PL  ++ + PVL+    + +  A  H  E  FTK  H L     ++  +    PP GLP+
Sbjct: 46  PLDAED-KLPVLTVVDILDSGFAAHHLPECTFTKA-HSLLSQSSKFYSKFHGRPPKGLPD 103

Query: 210 MNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD 258
            +L+   +   +   L   L  T  P   C  D++  N+++L  PE  +
Sbjct: 104 KSLINCTNRLPKFPVLN--LNETQLP---CPEDVR--NMVVLWIPEETE 145


>gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo
           sapiens]
          Length = 1642

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/96 (22%), Positives = 38/96 (39%)

Query: 107 GAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAA 166
           G I  GV    LE V   +  E  +    Y VF +  LE+ + S+     E    +LS  
Sbjct: 770 GVISYGVSMTTLEDVFLKLEVEAEIDQADYSVFTQQPLEEEMDSKSFDEMEQSLLILSET 829

Query: 167 IATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDL 202
            A  ++     +        + F T++R  K ++ +
Sbjct: 830 KAALVSTMSLWKQQMYTIAKFHFFTLKRESKSVRSV 865


>gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo
           sapiens]
          Length = 1642

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/96 (22%), Positives = 38/96 (39%)

Query: 107 GAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAA 166
           G I  GV    LE V   +  E  +    Y VF +  LE+ + S+     E    +LS  
Sbjct: 770 GVISYGVSMTTLEDVFLKLEVEAEIDQADYSVFTQQPLEEEMDSKSFDEMEQSLLILSET 829

Query: 167 IATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDL 202
            A  ++     +        + F T++R  K ++ +
Sbjct: 830 KAALVSTMSLWKQQMYTIAKFHFFTLKRESKSVRSV 865


>gi|32698700 PHD finger protein 8 [Homo sapiens]
          Length = 1024

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 72  YPVSGGLS-NLLFRC-----SLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAI 125
           Y V GG + NL FR      +LPDH   + E  R V L         +  L  E  +   
Sbjct: 392 YLVHGGKALNLAFRAWTRKEALPDHEDEIPETVRTVQL---------IKDLAREIRLVED 442

Query: 126 LAERSLGPQ-----LYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP 180
           + ++++G       L  +FP G +    P+        R  + S   + K          
Sbjct: 443 IFQQNVGKTSNIFGLQRIFPAGSIPLTRPAHSTSVSMSRLSLPSKNGSKKKGL------- 495

Query: 181 FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYS 217
              +P  LF   ER  K+   L P G    NL++ YS
Sbjct: 496 ---KPKELFKKAERKGKESSALGPAGQLSYNLMDTYS 529


>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
            sapiens]
          Length = 1272

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 188  LFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGN 247
            L  ++E  ++Q+QDL    L ++ L+     KD M     L E           + Q GN
Sbjct: 989  LCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGN 1048

Query: 248  ILLLSEPENAD 258
               ++EPE  +
Sbjct: 1049 ESEVNEPEEEE 1059


>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
            sapiens]
          Length = 1272

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 188  LFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGN 247
            L  ++E  ++Q+QDL    L ++ L+     KD M     L E           + Q GN
Sbjct: 989  LCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGN 1048

Query: 248  ILLLSEPENAD 258
               ++EPE  +
Sbjct: 1049 ESEVNEPEEEE 1059


>gi|109715862 gem (nuclear organelle) associated protein 8 [Homo
           sapiens]
          Length = 242

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 286 YDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVE 341
           YD+ H  W  Y    + +    Q   +     A  K+ + LS+EE+ + E D  VE
Sbjct: 77  YDH-HVAWQDYPCSSSHFRRSGQHPRYSSRIQASTKEDQALSKEEEMETESDAEVE 131


>gi|109715864 gem (nuclear organelle) associated protein 8 [Homo
           sapiens]
          Length = 242

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 286 YDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVE 341
           YD+ H  W  Y    + +    Q   +     A  K+ + LS+EE+ + E D  VE
Sbjct: 77  YDH-HVAWQDYPCSSSHFRRSGQHPRYSSRIQASTKEDQALSKEEEMETESDAEVE 131


>gi|8923481 gem (nuclear organelle) associated protein 8 [Homo
           sapiens]
          Length = 242

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 286 YDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEAKKGETLSQEEQRKLEEDLLVE 341
           YD+ H  W  Y    + +    Q   +     A  K+ + LS+EE+ + E D  VE
Sbjct: 77  YDH-HVAWQDYPCSSSHFRRSGQHPRYSSRIQASTKEDQALSKEEEMETESDAEVE 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,526,635
Number of Sequences: 37866
Number of extensions: 713016
Number of successful extensions: 2075
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 25
length of query: 395
length of database: 18,247,518
effective HSP length: 104
effective length of query: 291
effective length of database: 14,309,454
effective search space: 4164051114
effective search space used: 4164051114
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.