Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 6912662
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912662 sirtuin 4 [Homo sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912662 sirtuin 4 [Homo sapiens] 652 0.0
gi|6912664 sirtuin 5 isoform 1 [Homo sapiens] 109 3e-24
gi|13787215 sirtuin 5 isoform 2 [Homo sapiens] 104 9e-23
gi|7706710 sirtuin 6 [Homo sapiens] 87 3e-17
gi|7706712 sirtuin 7 [Homo sapiens] 86 3e-17
gi|6912660 sirtuin 3 isoform a [Homo sapiens] 85 7e-17
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 80 2e-15
gi|63054862 sirtuin 3 isoform b [Homo sapiens] 80 2e-15
gi|13775600 sirtuin 2 isoform 1 [Homo sapiens] 73 3e-13
gi|13775602 sirtuin 2 isoform 2 [Homo sapiens] 73 3e-13
gi|215982798 sirtuin 1 isoform b [Homo sapiens] 57 2e-08
gi|190358526 hypothetical protein LOC54785 [Homo sapiens] 29 4.7
gi|196049380 3-hydroxy-3-methylglutaryl-Coenzyme A reductase iso... 29 6.2
gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo... 29 6.2
gi|163965366 nascent polypeptide-associated complex alpha subuni... 29 6.2
gi|110349719 titin isoform N2-A [Homo sapiens] 28 8.1
gi|164663805 methyltransferase like 7B [Homo sapiens] 28 8.1
>gi|6912662 sirtuin 4 [Homo sapiens]
Length = 314
Score = 652 bits (1681), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MKMSFALTFRSAKGRWIANPSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVM 60
MKMSFALTFRSAKGRWIANPSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVM
Sbjct: 1 MKMSFALTFRSAKGRWIANPSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVM 60
Query: 61 TGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQ 120
TGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQ
Sbjct: 61 TGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQ 120
Query: 121 PNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGV 180
PNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGV
Sbjct: 121 PNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGV 180
Query: 181 LQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFGDTVNP 240
LQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFGDTVNP
Sbjct: 181 LQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFGDTVNP 240
Query: 241 DKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKL 300
DKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKL
Sbjct: 241 DKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKL 300
Query: 301 NSRCGELLPLIDPC 314
NSRCGELLPLIDPC
Sbjct: 301 NSRCGELLPLIDPC 314
>gi|6912664 sirtuin 5 isoform 1 [Homo sapiens]
Length = 310
Score = 109 bits (273), Expect = 3e-24
Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 27/304 (8%)
Query: 20 PSQPCSKASIGLFVPASP--------PLDPEKVKELQRFITLSKRLLVMTGAGISTESGI 71
PS+ S+ GL PAS + + ++F +K +++++GAG+S ESG+
Sbjct: 8 PSRLISQLYCGLKPPASTRNQICLKMARPSSSMADFRKFFAKAKHIVIISGAGVSAESGV 67
Query: 72 PDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTW 131
P +R G + + + + P R W S +PN H A++
Sbjct: 68 PTFRGAG-GYWRKWQAQDLATPLAFAHNP--SRVWEFYHYRREVMGSKEPNAGHRAIAEC 124
Query: 132 E----KLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGVLQERFQV 187
E K G+ ++TQN+D LH KAG++ L E+HG + + C CG V+ E ++
Sbjct: 125 ETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG------VVAENYK- 177
Query: 188 LNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQ--CGGHLKPDVVFFGDTVNPDKVDF 245
+P A + AP+ + + ++P C + CGG L+P VV+FG+ ++P ++
Sbjct: 178 -SPICPALSGKGAPEPGT--QDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEE 234
Query: 246 VHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKLNSRCG 305
V + + D LVVG+S VY F + +P+A N T + + CG
Sbjct: 235 VDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCG 294
Query: 306 ELLP 309
LP
Sbjct: 295 TTLP 298
>gi|13787215 sirtuin 5 isoform 2 [Homo sapiens]
Length = 299
Score = 104 bits (260), Expect = 9e-23
Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 27/285 (9%)
Query: 20 PSQPCSKASIGLFVPASP--------PLDPEKVKELQRFITLSKRLLVMTGAGISTESGI 71
PS+ S+ GL PAS + + ++F +K +++++GAG+S ESG+
Sbjct: 8 PSRLISQLYCGLKPPASTRNQICLKMARPSSSMADFRKFFAKAKHIVIISGAGVSAESGV 67
Query: 72 PDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTW 131
P +R G + + + + P R W S +PN H A++
Sbjct: 68 PTFRGAG-GYWRKWQAQDLATPLAFAHNP--SRVWEFYHYRREVMGSKEPNAGHRAIAEC 124
Query: 132 E----KLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGVLQERFQV 187
E K G+ ++TQN+D LH KAG++ L E+HG + + C C GV+ E ++
Sbjct: 125 ETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSC------GVVAENYK- 177
Query: 188 LNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQ--CGGHLKPDVVFFGDTVNPDKVDF 245
+P A + AP+ + + ++P C + CGG L+P VV+FG+ ++P ++
Sbjct: 178 -SPICPALSGKGAPEPGT--QDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEE 234
Query: 246 VHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPT 290
V + + D LVVG+S VY F + +P+A N T
Sbjct: 235 VDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETT 279
>gi|7706710 sirtuin 6 [Homo sapiens]
Length = 355
Score = 86.7 bits (213), Expect = 3e-17
Identities = 84/296 (28%), Positives = 128/296 (43%), Gaps = 41/296 (13%)
Query: 16 WIANPSQPCSKASIGLFVPASPPLDPE-KVKELQRFITLSKRLLVMTGAGISTESGIPDY 74
+ A S K GL PP + E KV EL R + S ++ TGAGIST SGIPD+
Sbjct: 5 YAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDF 64
Query: 75 RSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTWEKL 134
R HG + + +R A F F S +P H AL E++
Sbjct: 65 RGP--------------HGVWT----MEERGLAPKFD--TTFESARPTQTHMALVQLERV 104
Query: 135 GKLYWLVTQNVDALHTKAGSRR--LTELHGCMDRVLCLDCGEQTPRGVLQERFQVLNPTW 192
G L +LV+QNVD LH ++G R L ELHG M C C Q R +
Sbjct: 105 GLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTV----------- 153
Query: 193 SAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFGDTVNPDKVDFVHKRVKE 252
GL G + + + R + C G L+ ++ + D++ + + +
Sbjct: 154 -VGTMGLKATGRL-CTVAKARGLRA-----CRGELRDTILDWEDSLPDRDLALADEASRN 206
Query: 253 ADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKLNSRCGELL 308
AD + +G+SLQ+ L + + I+N+ PT+ D A L+++ E++
Sbjct: 207 ADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVM 262
>gi|7706712 sirtuin 7 [Homo sapiens]
Length = 400
Score = 86.3 bits (212), Expect = 3e-17
Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 54/284 (19%)
Query: 40 DPE----KVKELQRFITLSKRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDF 95
DPE KV+EL + +K L+V TGAGIST + IPDYR G++ +Q G
Sbjct: 81 DPEELRGKVRELASAVRNAKYLVVYTGAGISTAASIPDYRGPN-GVWTL-----LQKGRS 134
Query: 96 VRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSR 155
V +A + S +P H +++ + + +V+QN D LH ++G
Sbjct: 135 VSAADL---------------SEAEPTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLP 179
Query: 156 R--LTELHGCMDRVLCLDCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVR 213
R ++ELHG M +C C +E +V + T H R
Sbjct: 180 RTAISELHGNMYIEVCTSCVPN------REYVRVFDVTERTALH---------------R 218
Query: 214 SFQVPTCVQCGGHLKPDVVFFGD---TVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGY- 269
TC +CG L+ +V FG+ P + + AD++L +GSSL+V Y
Sbjct: 219 HQTGRTCHKCGTQLRDTIVHFGERGTLGQPLNWEAATEAASRADTILCLGSSLKVLKKYP 278
Query: 270 -RFILTAWEKKLP-IAILNIGPTRSDDLACLKLNSRCGELLPLI 311
+ +T + P + I+N+ T DD A LKL+ +C +++ L+
Sbjct: 279 RLWCMTKPPSRRPKLYIVNLQWTPKDDWAALKLHGKCDDVMRLL 322
>gi|6912660 sirtuin 3 isoform a [Homo sapiens]
Length = 399
Score = 85.1 bits (209), Expect = 7e-17
Identities = 76/255 (29%), Positives = 114/255 (44%), Gaps = 40/255 (15%)
Query: 55 KRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWP 114
+R++VM GAGIST SGIPD+RS GLY+ + + + + + P F
Sbjct: 138 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 197
Query: 115 QF--SSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAG--SRRLTELHGCMDRVLCL 170
+ +++PN H+ L G L L TQN+D L +G + +L E HG C
Sbjct: 198 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 257
Query: 171 DCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPD 230
C Q F P D+ V + +VP C C G +KPD
Sbjct: 258 VC---------QRPF---------------PGEDI---RADVMADRVPRCPVCTGVVKPD 290
Query: 231 VVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILN---I 287
+VFFG+ + P + AD LL++G+SL+V + + A +P ++N +
Sbjct: 291 IVFFGEPL-PQRFLLHVVDFPMADLLLILGTSLEV-EPFASLTEAVRSSVPRLLINRDLV 348
Query: 288 GP----TRSDDLACL 298
GP RS D+A L
Sbjct: 349 GPLAWHPRSRDVAQL 363
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 80.5 bits (197), Expect = 2e-15
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 40 DPEKVKELQRFITLSKRLLVMTGAGISTESGIPDYRSEKVGLYART--------DRRPIQ 91
D +++ + + K+++V+TGAG+S GIPD+RS G+YAR D + +
Sbjct: 239 DINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRD-GIYARLAVDFPDLPDPQAMF 297
Query: 92 HGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTK 151
++ R P +A+ +P QP+ H ++ +K GKL TQN+D L
Sbjct: 298 DIEYFRKDPRPFFKFAKEI--YP--GQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQV 353
Query: 152 AGSRRLTELHGCMDRVLCLDCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQ 211
AG +R+ + HG CL C +++V E A GD+F Q
Sbjct: 354 AGIQRIIQCHGSFATASCLIC-----------KYKV-----DCE----AVRGDIF---NQ 390
Query: 212 VRSFQVPTCVQCGGH-----LKPDVVFFGDTVNPDKVDFVHKRVK-EADSLLVVGSSLQV 265
V VP C +C +KP++VFFG+ + P++ K K E D L+V+GSSL+V
Sbjct: 391 V----VPRCPRCPADEPLAIMKPEIVFFGENL-PEQFHRAMKYDKDEVDLLIVIGSSLKV 445
>gi|63054862 sirtuin 3 isoform b [Homo sapiens]
Length = 257
Score = 80.5 bits (197), Expect = 2e-15
Identities = 74/250 (29%), Positives = 109/250 (43%), Gaps = 40/250 (16%)
Query: 60 MTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQF--S 117
M GAGIST SGIPD+RS GLY+ + + + + + P F +
Sbjct: 1 MVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPG 60
Query: 118 SHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAG--SRRLTELHGCMDRVLCLDCGEQ 175
+++PN H+ L G L L TQN+D L +G + +L E HG C C
Sbjct: 61 NYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC--- 117
Query: 176 TPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFG 235
Q F P D+ V + +VP C C G +KPD+VFFG
Sbjct: 118 ------QRPF---------------PGEDI---RADVMADRVPRCPVCTGVVKPDIVFFG 153
Query: 236 DTVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILN---IGP--- 289
+ + P + AD LL++G+SL+V + + A +P ++N +GP
Sbjct: 154 EPL-PQRFLLHVVDFPMADLLLILGTSLEV-EPFASLTEAVRSSVPRLLINRDLVGPLAW 211
Query: 290 -TRSDDLACL 298
RS D+A L
Sbjct: 212 HPRSRDVAQL 221
>gi|13775600 sirtuin 2 isoform 1 [Homo sapiens]
Length = 389
Score = 73.2 bits (178), Expect = 3e-13
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 55 KRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWP 114
+R++ + GAGIST +GIPD+RS GLY ++ + + + + +++ F
Sbjct: 77 RRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAK 136
Query: 115 QF--SSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRR--LTELHGCMDRVLCL 170
+ +P H+ + + G L TQN+D L AG + L E HG C+
Sbjct: 137 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 196
Query: 171 --DCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLK 228
C + P +W +E++ S P C C +K
Sbjct: 197 SASCRHEYPL------------SW---------------MKEKIFSEVTPKCEDCQSLVK 229
Query: 229 PDVVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQV 265
PD+VFFG+++ + + D LLV+G+SLQV
Sbjct: 230 PDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV 266
>gi|13775602 sirtuin 2 isoform 2 [Homo sapiens]
Length = 352
Score = 73.2 bits (178), Expect = 3e-13
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 55 KRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWP 114
+R++ + GAGIST +GIPD+RS GLY ++ + + + + +++ F
Sbjct: 40 RRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAK 99
Query: 115 QF--SSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRR--LTELHGCMDRVLCL 170
+ +P H+ + + G L TQN+D L AG + L E HG C+
Sbjct: 100 ELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 159
Query: 171 --DCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLK 228
C + P +W +E++ S P C C +K
Sbjct: 160 SASCRHEYPL------------SW---------------MKEKIFSEVTPKCEDCQSLVK 192
Query: 229 PDVVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQV 265
PD+VFFG+++ + + D LLV+G+SLQV
Sbjct: 193 PDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV 229
>gi|215982798 sirtuin 1 isoform b [Homo sapiens]
Length = 452
Score = 57.0 bits (136), Expect = 2e-08
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 34/152 (22%)
Query: 120 QPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRG 179
QP+ H ++ +K GKL TQN+D L AG +R+ + HG CL C
Sbjct: 27 QPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLIC------- 79
Query: 180 VLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGH-----LKPDVVFF 234
+++V E A GD+F QV VP C +C +KP++VFF
Sbjct: 80 ----KYKV-----DCE----AVRGDIF---NQV----VPRCPRCPADEPLAIMKPEIVFF 119
Query: 235 GDTVNPDKVDFVHKRVK-EADSLLVVGSSLQV 265
G+ + P++ K K E D L+V+GSSL+V
Sbjct: 120 GENL-PEQFHRAMKYDKDEVDLLIVIGSSLKV 150
>gi|190358526 hypothetical protein LOC54785 [Homo sapiens]
Length = 357
Score = 29.3 bits (64), Expect = 4.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 20 PSQPCSKASIGLFVPASPPLDPEKVKELQR 49
P++PC A PA PP+DPE +++L+R
Sbjct: 238 PARPCP-APAPTPTPAIPPIDPEVLRDLER 266
>gi|196049380 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
isoform 2 [Homo sapiens]
Length = 835
Score = 28.9 bits (63), Expect = 6.2
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 1 MKMSFALTFRSAKGRWIANPS-----QPCSKASIGLFVPASPPLDPEK-----------V 44
M MS L A RWIA+PS SK S+GL S ++P
Sbjct: 258 MIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKRIEPSVSLWQFYLSKMIS 317
Query: 45 KELQRFITLSKRLLV 59
++++ ITLS LL+
Sbjct: 318 MDIEQVITLSLALLL 332
>gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isoform
1 [Homo sapiens]
Length = 888
Score = 28.9 bits (63), Expect = 6.2
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 1 MKMSFALTFRSAKGRWIANPS-----QPCSKASIGLFVPASPPLDPEK-----------V 44
M MS L A RWIA+PS SK S+GL S ++P
Sbjct: 258 MIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKRIEPSVSLWQFYLSKMIS 317
Query: 45 KELQRFITLSKRLLV 59
++++ ITLS LL+
Sbjct: 318 MDIEQVITLSLALLL 332
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 28.9 bits (63), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 20 PSQPCSKASIGLFVPASPPL-DPEKVKEL 47
P +P ++ + L +P SPPL DPE +K L
Sbjct: 490 PKEPSTQVATTLRIPVSPPLPDPEDLKNL 518
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.5 bits (62), Expect = 8.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 20 PSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVMTGAGISTESGIPDYRSEKV 79
P +P + I + V P KV E+Q+ + +++ ++T S +P+ +KV
Sbjct: 9348 PKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTEEKITIVTQREESPPPAVPEIPKKKV 9407
Query: 80 GLYARTDRRPI 90
+R+P+
Sbjct: 9408 ----PEERKPV 9414
>gi|164663805 methyltransferase like 7B [Homo sapiens]
Length = 244
Score = 28.5 bits (62), Expect = 8.1
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 162 GCMDRVLC--LDCGEQTPRGVLQERFQVLNP 190
G MD V+C + C Q+PR VLQE +VL P
Sbjct: 136 GSMDVVVCTLVLCSVQSPRKVLQEVRRVLRP 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,004,983
Number of Sequences: 37866
Number of extensions: 590204
Number of successful extensions: 1175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 23
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.