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Search of human proteins with 68509930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68509930 myelin basic protein isoform 1 [Homo sapiens] 417 e-117
gi|4505123 myelin basic protein isoform 2 [Homo sapiens] 386 e-108
gi|68509940 Golli-mbp isoform 1 [Homo sapiens] 345 1e-95
gi|68509928 myelin basic protein isoform 3 [Homo sapiens] 345 1e-95
gi|68509932 myelin basic protein isoform 4 [Homo sapiens] 314 4e-86
gi|68509938 Golli-mbp isoform 2 [Homo sapiens] 127 6e-30
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 33 0.12
gi|169216272 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 33 0.12
gi|169216572 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.20
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.20
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.20
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens] 33 0.20
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens] 33 0.20
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 32 0.46
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 32 0.46
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 32 0.46
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 32 0.46
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|7662018 PHD finger protein 3 [Homo sapiens] 30 1.0
gi|60097902 filaggrin [Homo sapiens] 30 1.3
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ... 30 1.3
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ... 30 1.3
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|27262622 neuron navigator 1 [Homo sapiens] 30 1.7
gi|57864582 hornerin [Homo sapiens] 29 2.3
>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
Length = 197
Score = 417 bits (1072), Expect = e-117
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
Query: 181 FKLGGRDSRSGSPMARR 197
FKLGGRDSRSGSPMARR
Sbjct: 181 FKLGGRDSRSGSPMARR 197
>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
Length = 186
Score = 386 bits (991), Expect = e-108
Identities = 186/197 (94%), Positives = 186/197 (94%), Gaps = 11/197 (5%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
VTPRTPPPSQGK GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169
Query: 181 FKLGGRDSRSGSPMARR 197
FKLGGRDSRSGSPMARR
Sbjct: 170 FKLGGRDSRSGSPMARR 186
>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
Length = 304
Score = 345 bits (885), Expect = 1e-95
Identities = 171/197 (86%), Positives = 171/197 (86%), Gaps = 26/197 (13%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 192
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 193 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 227
Query: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 228 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 287
Query: 181 FKLGGRDSRSGSPMARR 197
FKLGGRDSRSGSPMARR
Sbjct: 288 FKLGGRDSRSGSPMARR 304
>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
Length = 171
Score = 345 bits (885), Expect = 1e-95
Identities = 171/197 (86%), Positives = 171/197 (86%), Gaps = 26/197 (13%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
Query: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 95 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 154
Query: 181 FKLGGRDSRSGSPMARR 197
FKLGGRDSRSGSPMARR
Sbjct: 155 FKLGGRDSRSGSPMARR 171
>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
Length = 160
Score = 314 bits (804), Expect = 4e-86
Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
Query: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
VTPRTPPPSQGKG AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 95 VTPRTPPPSQGKG-----------AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 143
Query: 181 FKLGGRDSRSGSPMARR 197
FKLGGRDSRSGSPMARR
Sbjct: 144 FKLGGRDSRSGSPMARR 160
>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
Length = 197
Score = 127 bits (319), Expect = 6e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 33.5 bits (75), Expect = 0.12
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 65 PGRSPLPSHARSQPGLCN----MYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PG SP+P+ R + G + HH A+ +Y L + +D V
Sbjct: 1309 PGGSPIPADPRKKTGFAEDDRKAFASKHHVAKCQNY--LAESKPSGREDPGSGVR----- 1361
Query: 121 VTPRTPPPSQGK-------GRGLSLSRFSWG 144
V+P++PP Q K GRG S WG
Sbjct: 1362 VSPKSPPTDQKKGTPRKSTGRGEEDSVAQWG 1392
>gi|169216272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 33.5 bits (75), Expect = 0.12
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 44 RFFGGDRGAPKRGSGKVP---WLKP---GRSPLPSHARSQP-----GLCNMY----KDSH 88
R F G R + + +VP W+ G +PL H+ SQ G N Y
Sbjct: 54 RTFRGQRTSETPSTMRVPSPSWIPSTSWGPTPLTGHSNSQVCSSSHGWNNSYDCCTSQGQ 113
Query: 89 HPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQG 131
R +P S G E P + + ++ T TP PSQG
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 33.5 bits (75), Expect = 0.12
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 65 PGRSPLPSHARSQPGLCN----MYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PG SP+P+ R + G + HH A+ +Y L + +D V
Sbjct: 1309 PGGSPIPADPRKKTGFAEDDRKAFASKHHVAKCQNY--LAESKPSGREDPGSGVR----- 1361
Query: 121 VTPRTPPPSQGK-------GRGLSLSRFSWG 144
V+P++PP Q K GRG S WG
Sbjct: 1362 VSPKSPPTDQKKGTPRKSTGRGEEDSVAQWG 1392
>gi|169216572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 33.5 bits (75), Expect = 0.12
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 44 RFFGGDRGAPKRGSGKVP---WLKP---GRSPLPSHARSQP-----GLCNMY----KDSH 88
R F G R + + +VP W+ G +PL H+ SQ G N Y
Sbjct: 54 RTFRGQRTSETPSTMRVPSPSWIPSTSWGPTPLTGHSNSQVCSSSHGWNNSYDCCTSQGQ 113
Query: 89 HPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQG 131
R +P S G E P + + ++ T TP PSQG
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.7 bits (73), Expect = 0.20
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 121 VTPRT----PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGV 171
+TPR P + G GR G + R G EG R G+ G R S KG +G
Sbjct: 90 LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA 149
Query: 172 DAQGTLSKIFKLGGRDSRSGSPMAR 196
D +G + GG + +P+ R
Sbjct: 150 DPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.7 bits (73), Expect = 0.20
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 121 VTPRT----PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGV 171
+TPR P + G GR G + R G EG R G+ G R S KG +G
Sbjct: 90 LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA 149
Query: 172 DAQGTLSKIFKLGGRDSRSGSPMAR 196
D +G + GG + +P+ R
Sbjct: 150 DPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 32.7 bits (73), Expect = 0.20
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 121 VTPRT----PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGV 171
+TPR P + G GR G + R G EG R G+ G R S KG +G
Sbjct: 90 LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA 149
Query: 172 DAQGTLSKIFKLGGRDSRSGSPMAR 196
D +G + GG + +P+ R
Sbjct: 150 DPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
Length = 720
Score = 32.7 bits (73), Expect = 0.20
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 65 PGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLP--QKSHGRTQDENPVVHFFKNIVT 122
P + L SH+R + GL HH G P Q++ Q N +VHF N T
Sbjct: 47 PVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHFQANEDT 106
Query: 123 PRTPP 127
P++ P
Sbjct: 107 PKSVP 111
>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
Length = 718
Score = 32.7 bits (73), Expect = 0.20
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 65 PGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLP--QKSHGRTQDENPVVHFFKNIVT 122
P + L SH+R + GL HH G P Q++ Q N +VHF N T
Sbjct: 47 PVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHFQANEDT 106
Query: 123 PRTPP 127
P++ P
Sbjct: 107 PKSVP 111
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 31.6 bits (70), Expect = 0.46
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 123 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 172
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 342 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 380
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 31.6 bits (70), Expect = 0.46
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 123 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 172
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 443 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 481
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 31.6 bits (70), Expect = 0.46
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 123 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 172
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 339 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 377
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 31.6 bits (70), Expect = 0.46
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 123 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 172
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 440 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 478
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 30.4 bits (67), Expect = 1.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 64 KPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVV 114
KP L + + PG K+ HHPA+T H QK + Q + P +
Sbjct: 590 KPLTHSLSDKSHAHPGCL---KEPHHPAQTGHVSHSSQKQCHKPQQQAPAM 637
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 33/184 (17%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVPW 62
++ P +RHGS++ +A + H+ G R + + DS R G + G +
Sbjct: 1349 ARSSPGERHGSRHQQSADSSRHS--GIGHRQASSAVRDSGHRGSSGSQVTNSEGHSE--- 1403
Query: 63 LKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVV--HFFKNI 120
+ +H ++ P ++ SH + G +S GR++ V H
Sbjct: 1404 -DSDTQSVSAHGQAGP-----HQQSHKESARGQSG----ESSGRSRSFLYQVSSHEQSES 1453
Query: 121 VTPRTPPPSQGK-----GRGLSLSRFSWGAEGQ-----RPGFGYGGRASDY------KSA 164
+T P + G+ + + SR S +GQ PG GGR Y +S
Sbjct: 1454 THGQTAPSTGGRQGSRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQGSYHEQSVDRSG 1513
Query: 165 HKGF 168
H G+
Sbjct: 1514 HSGY 1517
Score = 29.6 bits (65), Expect = 1.7
Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 31/212 (14%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRF-FGGDRGAPKRGSGKVP 61
++ P +RHGS++ +A D +RH +PR + + + G + G + + G +
Sbjct: 1025 ARSSPGERHGSRHQQSA---DSSRHSGIPRRQASSAVRDSGHWGSSGSQASDSEGHSE-- 1079
Query: 62 WLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHG-----RTQDENPVVHF 116
+ + H + P ++ SH + G +S T +++ H
Sbjct: 1080 --ESDTQSVSGHGQDGP-----HQQSHQESARDWSGGRSGRSGSFIYQVSTHEQSESAHG 1132
Query: 117 FKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQ-----RPGFGYGGRASDY------KSAH 165
T R + R SR S EGQ PG GGR + +S H
Sbjct: 1133 RTRTSTGRRQGSHHEQAR--DSSRHSASQEGQDTIRAHPGSRRGGRQGSHHEQSVDRSGH 1190
Query: 166 KGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 197
G G SRS S R+
Sbjct: 1191 SGSHHSHTTSQGRSDASHGQSGSRSASRQTRK 1222
>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 124 RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 175
R P Q +GR R + G G PGF GGR + K G GV G
Sbjct: 15 RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73
Query: 176 TLSKIFKLGGRDSRSGS-PMAR 196
S+ G RD G+ P AR
Sbjct: 74 AASRTRLAGSRDGEGGTDPSAR 95
>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
Length = 95
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 124 RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 175
R P Q +GR R + G G PGF GGR + K G GV G
Sbjct: 15 RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73
Query: 176 TLSKIFKLGGRDSRSGS-PMAR 196
S+ G RD G+ P AR
Sbjct: 74 AASRTRLAGSRDGEGGTDPSAR 95
>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
Length = 95
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 124 RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 175
R P Q +GR R + G G PGF GGR + K G GV G
Sbjct: 15 RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73
Query: 176 TLSKIFKLGGRDSRSGS-PMAR 196
S+ G RD G+ P AR
Sbjct: 74 AASRTRLAGSRDGEGGTDPSAR 95
>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 124 RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 175
R P Q +GR R + G G PGF GGR + K G GV G
Sbjct: 15 RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73
Query: 176 TLSKIFKLGGRDSRSGS-PMAR 196
S+ G RD G+ P AR
Sbjct: 74 AASRTRLAGSRDGEGGTDPSAR 95
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 29.6 bits (65), Expect = 1.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 47 GGDRGAPK-RGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHG 105
GGD GA + RG+G+ GR LP A++ G M K S + GS+ + G
Sbjct: 19 GGDEGADEPRGAGRKAAAADGRGMLPKRAKAPGGGGGMAKASAAELKVFKSGSVDSRVPG 78
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/163 (26%), Positives = 57/163 (34%), Gaps = 23/163 (14%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVPW 62
S R S HG + + + H RHG H + G + RG + GSG+
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQT-- 345
Query: 63 LKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVT 122
S H S G + Y S H + + H S Q HG T + +
Sbjct: 346 -----SGFGQH-ESGSGQSSGY--SKHGSGSGHSSS--QGQHGSTSGQAS-----SSGQH 390
Query: 123 PRTPPPSQGKGRGLSLSRFSWG------AEGQRPGFGYGGRAS 159
+ S G+ S SR S G GQ PG G G S
Sbjct: 391 GSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSGS 433
Score = 28.9 bits (63), Expect = 3.0
Identities = 43/173 (24%), Positives = 55/173 (31%), Gaps = 48/173 (27%)
Query: 8 SQRHGSKYLATAS----TMDHARHGFLP--------RHRDTGILDSIGRFFGGDR---GA 52
S H S Y S + H +HG + G S G+ G R G
Sbjct: 471 SSEHSSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGH 530
Query: 53 PKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENP 112
+ GSG G+SP PS R + G + S+ P YGS S G
Sbjct: 531 SRHGSGS------GQSPSPSRGRHESG--SRQSSSYGPHG---YGSGRSSSRG------- 572
Query: 113 VVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAH 165
P G G L GQ G+G G +S + S H
Sbjct: 573 --------------PYESGSGHSSGLGHQE-SRSGQSSGYGQHGSSSGHSSTH 610
Score = 28.9 bits (63), Expect = 3.0
Identities = 43/160 (26%), Positives = 58/160 (36%), Gaps = 44/160 (27%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + RHG +G S G+ G R G + GSG
Sbjct: 1428 EQHGSR---SGQSSRGERHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 1473
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + + YGS S R E+ H
Sbjct: 1474 GQSPSPSRGRHGSG-------SGQSSSYSPYGSGSGWSSSRGPYESGSSH---------- 1516
Query: 126 PPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAH 165
S G G S S GQ G+G G +S + S H
Sbjct: 1517 ---SSGLGHRESRS-------GQSSGYGQHGSSSGHSSTH 1546
Score = 28.5 bits (62), Expect = 3.9
Identities = 43/160 (26%), Positives = 58/160 (36%), Gaps = 44/160 (27%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + RHG +G S G+ G R G + GSG
Sbjct: 2368 EQHGSR---SGQSSRGERHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 2413
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + + YGS S R E+ H
Sbjct: 2414 GQSPSPSRGRHGSG-------SGQSSSYSPYGSGSGWSSSRGPYESGSGH---------- 2456
Query: 126 PPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAH 165
S G G S S GQ G+G G +S + S H
Sbjct: 2457 ---SSGLGHRESRS-------GQSSGYGQHGSSSGHSSTH 2486
Score = 28.1 bits (61), Expect = 5.0
Identities = 38/169 (22%), Positives = 55/169 (32%), Gaps = 15/169 (8%)
Query: 8 SQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGR 67
S HG ++ + + R G +G S G G RG+ R S G
Sbjct: 2039 SSSHGQHGSGSSQSSGYGRQG-------SGSGQSPGH---GQRGSGSRQSPSYGRHGSGS 2088
Query: 68 SPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPP 127
S + PGL HH + + S Q G H ++ + R
Sbjct: 2089 GRSSSSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGER 2148
Query: 128 PSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGT 176
G S SR+ G R G+G + S S H +G G+
Sbjct: 2149 HGSSSG---SSSRYGQHGSGSRQSSGHGRQGSG--SGHSPSRGRHGSGS 2192
Score = 27.7 bits (60), Expect = 6.6
Identities = 50/187 (26%), Positives = 67/187 (35%), Gaps = 46/187 (24%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + +HG +G S G+ G R G + GSG
Sbjct: 1898 EQHGSR---SGQSSRGEQHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 1943
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + YGS S R E+ H
Sbjct: 1944 GQSPSPSRGRHGSG-------SGQSSSYGPYGSGSGWSSSRGPYESGSGH---------- 1986
Query: 126 PPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGG 185
S G G S S GQ G+G G +S + S H G G A G S + G
Sbjct: 1987 ---SSGLGHRESRS-------GQSSGYGQHGSSSGHSSTH-GQHG-SASGQSSSCGQHGA 2034
Query: 186 RDSRSGS 192
+S S
Sbjct: 2035 SSGQSSS 2041
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,658,681
Number of Sequences: 37866
Number of extensions: 546054
Number of successful extensions: 1563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 82
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.