Search of human proteins with 68299770

Search of human proteins with 68299770

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|68299770 hypothetical protein LOC25871 [Homo sapiens]
         (567 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68299770 hypothetical protein LOC25871 [Homo sapiens]             1126   0.0  
gi|4885583 Rho-associated, coiled-coil containing protein kinase...    35   0.14 
gi|38570058 hypothetical protein LOC80129 [Homo sapiens]               33   0.70 
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    32   2.0  
gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]                  32   2.0  
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         31   2.7  
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                31   2.7  
gi|111038137 glycine-N-acyltransferase isoform a [Homo sapiens]        31   3.5  
gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]          30   4.5  
gi|7706095 RAS-like, family 12 protein [Homo sapiens]                  30   4.5  
gi|110349719 titin isoform N2-A [Homo sapiens]                         30   5.9  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      30   5.9  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      30   5.9  
gi|110349715 titin isoform N2-B [Homo sapiens]                         30   5.9  
gi|22027648 lipin 1 [Homo sapiens]                                     30   5.9  
gi|155722985 SMC5 protein [Homo sapiens]                               30   5.9  
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa...    30   5.9  
gi|32813445 zinc finger and SCAN domain containing 22 [Homo sapi...    30   7.7  
gi|12597655 centromere protein H [Homo sapiens]                        30   7.7  

>gi|68299770 hypothetical protein LOC25871 [Homo sapiens]
          Length = 567

 Score = 1126 bits (2912), Expect = 0.0
 Identities = 567/567 (100%), Positives = 567/567 (100%)

Query: 1   MMAAVPPGLEPWNRVRIPKAGNRSAVTVQNPGAALDLCIAAVIKECHLVILSLKSQTLDA 60
           MMAAVPPGLEPWNRVRIPKAGNRSAVTVQNPGAALDLCIAAVIKECHLVILSLKSQTLDA
Sbjct: 1   MMAAVPPGLEPWNRVRIPKAGNRSAVTVQNPGAALDLCIAAVIKECHLVILSLKSQTLDA 60

Query: 61  ETDVLCAVLYSNHNRMGRHKPHLALKQVEQCLKRLKNMNLEGSIQDLFELFSSNENQPLT 120
           ETDVLCAVLYSNHNRMGRHKPHLALKQVEQCLKRLKNMNLEGSIQDLFELFSSNENQPLT
Sbjct: 61  ETDVLCAVLYSNHNRMGRHKPHLALKQVEQCLKRLKNMNLEGSIQDLFELFSSNENQPLT 120

Query: 121 TKVCVVPSQPVVELVLMKVLGACKLLLRLLDCCCKTFLLTVKHLGLQEFIILNLVMVGLV 180
           TKVCVVPSQPVVELVLMKVLGACKLLLRLLDCCCKTFLLTVKHLGLQEFIILNLVMVGLV
Sbjct: 121 TKVCVVPSQPVVELVLMKVLGACKLLLRLLDCCCKTFLLTVKHLGLQEFIILNLVMVGLV 180

Query: 181 SRLWVLYKGVLKRLILLYEPLFGLLQEVARIQPMPYFKDFTFPSDITEFLGQPYFEAFKK 240
           SRLWVLYKGVLKRLILLYEPLFGLLQEVARIQPMPYFKDFTFPSDITEFLGQPYFEAFKK
Sbjct: 181 SRLWVLYKGVLKRLILLYEPLFGLLQEVARIQPMPYFKDFTFPSDITEFLGQPYFEAFKK 240

Query: 241 KMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNK 300
           KMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNK
Sbjct: 241 KMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNK 300

Query: 301 RVFKEESSEFDVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQR 360
           RVFKEESSEFDVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQR
Sbjct: 301 RVFKEESSEFDVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQR 360

Query: 361 FREAESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECI 420
           FREAESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECI
Sbjct: 361 FREAESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECI 420

Query: 421 KTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRKSA 480
           KTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRKSA
Sbjct: 421 KTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRKSA 480

Query: 481 TDTSAKWRLSHCTVHRTDLYPNSKQLLNSGVSMPVIQTKEKMIHENLRGIHENETDSWTV 540
           TDTSAKWRLSHCTVHRTDLYPNSKQLLNSGVSMPVIQTKEKMIHENLRGIHENETDSWTV
Sbjct: 481 TDTSAKWRLSHCTVHRTDLYPNSKQLLNSGVSMPVIQTKEKMIHENLRGIHENETDSWTV 540

Query: 541 MQINKNSTSGTIKETDDIDDIFALMGV 567
           MQINKNSTSGTIKETDDIDDIFALMGV
Sbjct: 541 MQINKNSTSGTIKETDDIDDIFALMGV 567


>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
            [Homo sapiens]
          Length = 1354

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 16/193 (8%)

Query: 311  DVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQRFREAESF-TQ 369
            + +A   QL     +E  F+   +Q   K    + Q++    H    V R  EA S  T+
Sbjct: 896  ETKAESEQLARGLLEEQYFEL--TQESKKAASRNRQEITDKDHT---VSRLEEANSMLTK 950

Query: 370  LSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECIKTSICNHLL 429
              E ++        K  KA+  +   KL K   + +L+A           +KT   N L 
Sbjct: 951  DIEILRRENEELTEKMKKAEEEY---KLEKEEEISNLKAAFEKNINTERTLKTQAVNKLA 1007

Query: 430  RGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGT---RKSATDTSAK 486
                 K  K  + ++++  + LR++ K  RKLQ  L +E ++F+Q     +K   D  A 
Sbjct: 1008 EIMNRKDFK--IDRKKANTQDLRKKEKENRKLQLELNQEREKFNQMVVKHQKELNDMQA- 1064

Query: 487  WRLSHCTVHRTDL 499
             +L     HR +L
Sbjct: 1065 -QLVEECAHRNEL 1076


>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
          Length = 715

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 249 KGINKLLNKLFLINEQSPRASEETLLGIS--------KKAKQMKINVQNNVDLGQPVKNK 300
           KG   +L +   ++E   +AS ET++ ++        K A   +   + N DL   V+ K
Sbjct: 208 KGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAK 267

Query: 301 RVFKEESSEFDVRAFCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQR 360
              + E   F  R    Q    A+++     K S S L+ +  +SQ  + T  ++ F   
Sbjct: 268 EALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYF--S 325

Query: 361 FRE 363
           FRE
Sbjct: 326 FRE 328


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 35/235 (14%)

Query: 255  LNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSEFDVRA 314
            LNK  +  +Q    SE+  L +SK+ +Q    +Q+N D+     + +  K +  E  +  
Sbjct: 868  LNKQIVHFQQELSLSEKKNLTLSKEVQQ----IQSNYDIAIAELHVQKSKNQEQEEKIMK 923

Query: 315  FCNQLKHKATQETSFDFKCSQSRLKTTKYSSQKVIGTPHAKSFVQRFREAESFTQLSEEI 374
              N+++   T   S     SQ +L  TK    + + +    S +         +  SEE 
Sbjct: 924  LSNEIE---TATRSITNNVSQIKLMHTKIDELRTLDSVSQISNID-LLNLRDLSNGSEED 979

Query: 375  QMAVVWCRSKKLKAQAIFLGNKLLKSNRLKHLEAQ----GTSLPKKLECIKTSICNHLLR 430
             +            Q   LGN  L S ++K    Q      S    +E I    C  +++
Sbjct: 980  NLP---------NTQLDLLGNDYLVSKQVKEYRIQEPNRENSFHSSIEAIWEE-CKEIVK 1029

Query: 431  GSGIKTSKHHLRQRRSQNKFLR-----------RQRKPQRKLQSTLLREIQQFSQ 474
             S  K+  H + +   Q + L+           R ++ + K Q  LL+E +   Q
Sbjct: 1030 ASSKKS--HQIEELEQQIEKLQAEVKGYKDENNRLKEKEHKNQDDLLKEKETLIQ 1082


>gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]
          Length = 1261

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 396 KLLKSNRLKHLEAQGTSLPKKLECIKTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQR 455
           +L K  + K LEA+      KL C++        + S  +  + HL       K L +Q 
Sbjct: 309 ELWKQEQNKMLEAENALKKAKLLCMQRQDEYEKAKSSMFRAEEEHLSSSGGLAKNLNKQL 368

Query: 456 KPQRKLQSTLLREIQQFSQGTRKSATDTSAKWRLSHCTVHRTDLYPNSKQLL 507
           + +R+L+   L+++++ ++  +   T+   +         R DL    +++L
Sbjct: 369 EKKRRLEEEALQKVEEANELYKVCVTNVEER---------RNDLENTKREIL 411


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 438 KHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRK 478
           +HH  QR+ + +  R ++   R++ ST+ ++++QF     K
Sbjct: 171 RHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEK 211


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 47/237 (19%)

Query: 225 DITEFLGQPYFEAFKKKMPIAFAAKGINKLLNKLFLIN---EQSPRASEETLLGISK--- 278
           +  EFLG+   +  ++  P   AA  I+K L          +   R  +  L+ +S    
Sbjct: 23  ETAEFLGEDLLQVEQRLEPAKRAAHNIHKRLQACLQGQSGADMDKRVKKLPLMALSTTMA 82

Query: 279 -------------KAKQMKINVQNNV-------------DLGQPVKNKRVFKEESSEFDV 312
                        KA +M   +QN +             D+ QP+   R+ +EE      
Sbjct: 83  ESFKELDPDSSMGKALEMSCAIQNQLARILAEFEMTLERDVLQPLS--RLSEEELPAI-- 138

Query: 313 RAFCNQLKHKAT-QETSFDFKCSQSRL-KTTKYS--SQKVIGTPHAKSFVQRFREAESFT 368
                 LKHK + Q+   D+   +SRL + TK S  SQ + G+P + S      + E+  
Sbjct: 139 ------LKHKKSLQKLVSDWNTLKSRLSQATKNSGSSQGLGGSPGSHSHTTMANKVETLK 192

Query: 369 QLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSNR-LKHLEAQGTSLPKKLECIKTSI 424
           +  EE++  V  CR + L     F+  +   +N  ++ LE Q     + L  + T++
Sbjct: 193 EEEEELKRKVEQCRDEYLADLYHFVTKEDSYANYFIRLLEIQADYHRRSLSSLDTAL 249


>gi|111038137 glycine-N-acyltransferase isoform a [Homo sapiens]
          Length = 296

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 216 YFKDFTFPSDITEFLGQPYFEAFKKKMPIAFAAKGINKLLNKLFLINEQSPRASEETLLG 275
           Y KD   P +  EFLG P    +K+ + I  +   +N+ +  L  I     + ++  L  
Sbjct: 79  YSKD---PQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAIKSFKVKQTQRILYM 135

Query: 276 ISKKAKQM-------KINVQNNVDLGQP-VKNKRVFKEESSEFDVRAFCNQLKHKATQET 327
            ++ AK++       KI   N    G+P   N+ +FK  S +       N+  H    E 
Sbjct: 136 AAETAKELTPFLLKSKILSPNG---GKPKAINQEMFKLSSMDVTHAHLVNKFWHFGGNER 192

Query: 328 SFDF--KCSQS 336
           S  F  +C Q+
Sbjct: 193 SQRFIERCIQT 203


>gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]
          Length = 661

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 231 GQPYFEAFKKKMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKINVQNN 290
           G P  E  K+K+      KG + L N    I+E  PR  +    G   K  + ++  +  
Sbjct: 24  GVPVEETKKQKLSECSLTKGQDGLQNDFLSISEDVPRPPDTVSTGKGGKNSEAQLEDEEE 83

Query: 291 VDLGQPVKNKRVFKEESSEFDVRAFCNQLKHKATQ 325
                  + +    EE  E +  +F + +KH  T+
Sbjct: 84  -------EEEDGLSEECEEEESESFADMMKHGLTE 111


>gi|7706095 RAS-like, family 12 protein [Homo sapiens]
          Length = 266

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 341 TKYSSQKVIGTPHAKSFVQRFREAESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKS 400
           T  + ++ +   HA   V      +SF   S  +++  +  +  +    A+ LGNKL  +
Sbjct: 80  TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 139

Query: 401 NRLKHLEAQGTSLPKKLECI 420
              +  +A+G +L  +  C+
Sbjct: 140 QYRQVTKAEGVALAGRFGCL 159


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 272   TLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSE---FDVRAFCNQLKHKAT 324
             T+  ++K++  +  +V  N D G PVKN  + K E+S+     V   CN+L +K T
Sbjct: 26285 TVQDVTKESAVLSWDVPEN-DGGAPVKNYHIEKREASKKAWVSVTNNCNRLSYKVT 26339


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 272   TLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSE---FDVRAFCNQLKHKAT 324
             T+  ++K++  +  +V  N D G PVKN  + K E+S+     V   CN+L +K T
Sbjct: 19980 TVQDVTKESAVLSWDVPEN-DGGAPVKNYHIEKREASKKAWVSVTNNCNRLSYKVT 20034


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 272   TLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSE---FDVRAFCNQLKHKAT 324
             T+  ++K++  +  +V  N D G PVKN  + K E+S+     V   CN+L +K T
Sbjct: 19913 TVQDVTKESAVLSWDVPEN-DGGAPVKNYHIEKREASKKAWVSVTNNCNRLSYKVT 19967


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 272   TLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSE---FDVRAFCNQLKHKAT 324
             T+  ++K++  +  +V  N D G PVKN  + K E+S+     V   CN+L +K T
Sbjct: 19788 TVQDVTKESAVLSWDVPEN-DGGAPVKNYHIEKREASKKAWVSVTNNCNRLSYKVT 19842


>gi|22027648 lipin 1 [Homo sapiens]
          Length = 890

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 184 WVLYKG-VLKRLILLYEP--LFGLLQ--------EVARIQPMPYFKDFTFPSDITEFLGQ 232
           WV  +G VL +  LL  P  LF  L         E  ++Q +   K+  FP+       +
Sbjct: 739 WVNERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNT------E 792

Query: 233 PYFEAFKKKMPIAFAAKGINKLLNKLFLINEQSPRASEETLLGISKKAKQMKI 285
           P++ AF  +    ++ K +   LN++F +N +     E     IS   +  ++
Sbjct: 793 PFYAAFGNRPADVYSYKQVGVSLNRIFTVNPKGELVQEHAKTNISSYVRLCEV 845


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 31/185 (16%), Positives = 73/185 (39%), Gaps = 19/185 (10%)

Query: 365 ESFTQLSEEIQMAVVWCRSKKLKAQAIFLGNKLLKSN----------------RLKHLEA 408
           E   ++ +E ++  ++   +K   +  F  NK++ SN                + +HLE 
Sbjct: 598 ERIERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEE 657

Query: 409 QGTSLPKKLECIKTSICNHLLRGSGIKTSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLRE 468
           Q   + +KL+ + + +         ++   + LRQ++ +    + +++   +  S+ L  
Sbjct: 658 QLKEIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGS 717

Query: 469 IQQFSQGT-RKSATDTSAKWRLSHCTVHRTDLYPNSKQLLNSGVSMPVIQTKEKMIHENL 527
           ++   Q T      +  A  ++    V +  L      L+    S+ +   K  +I +N 
Sbjct: 718 LKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHI--QKVDLILQNT 775

Query: 528 RGIHE 532
             I E
Sbjct: 776 TVISE 780


>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
           sapiens]
          Length = 685

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 26/155 (16%)

Query: 383 SKKLKAQAIFLGNKLLKSNRLKHLEAQGTSLPKKLECIKTSICN--HL-------LRGSG 433
           SKK  +Q   +G KL K +  +H  ++G  LP   +  + S+ N  HL       + G  
Sbjct: 228 SKKAPSQKESVGTKLSKGSGDRHPSSKGMPLPHAEKKSRPSMANEKHLALSSSKSMPGER 287

Query: 434 IK-----TSKHHLRQRRSQNKFLRRQRKPQRKLQSTLLREIQQFSQGTRKSATDTSAKWR 488
           IK     +S+  LR+   +  F     KP     S  + +    +  T+KSA +  AK  
Sbjct: 288 IKAGSGNSSQPSLREGHDKPVF-NGAGKPHSSTSSPSVPKTS--ASRTQKSAVEHKAKKS 344

Query: 489 LSH---------CTVHRTDLYPNSKQLLNSGVSMP 514
           LSH          T H     P  +Q  +S  S P
Sbjct: 345 LSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAP 379


>gi|32813445 zinc finger and SCAN domain containing 22 [Homo
           sapiens]
          Length = 491

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 2   MAAVPPGLEPWNRVRIPKAGNRSAVTVQNPGAALD 36
           + A+PP ++ W   + PK+G  +AV V++    LD
Sbjct: 98  LGALPPEIQAWVGAQSPKSGEEAAVLVEDLTQVLD 132


>gi|12597655 centromere protein H [Homo sapiens]
          Length = 247

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 255 LNKLFLINEQSPRASEETLLGISKKAKQMKINVQNNVDLGQPVKNKRVFKEESSE 309
           LNKL + ++Q     EE LL I KK  Q+K   ++ +   Q  KNK+    +S E
Sbjct: 136 LNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSME 190


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,728,776
Number of Sequences: 37866
Number of extensions: 822912
Number of successful extensions: 2411
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2397
Number of HSP's gapped (non-prelim): 34
length of query: 567
length of database: 18,247,518
effective HSP length: 108
effective length of query: 459
effective length of database: 14,157,990
effective search space: 6498517410
effective search space used: 6498517410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.