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Search of human proteins with 66932890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66932890 vanin 3 isoform 3 precursor [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66932890 vanin 3 isoform 3 precursor [Homo sapiens] 243 2e-65
gi|66932888 vanin 3 isoform 1 precursor [Homo sapiens] 238 1e-63
gi|17865819 vanin 3 isoform 2 precursor [Homo sapiens] 238 1e-63
gi|17865814 vanin 2 isoform 1 precursor [Homo sapiens] 179 4e-46
gi|223633991 vanin 1 precursor [Homo sapiens] 149 5e-37
gi|17865816 vanin 2 isoform 2 [Homo sapiens] 107 2e-24
gi|4557373 biotinidase precursor [Homo sapiens] 92 9e-20
gi|147905700 ectonucleoside triphosphate diphosphohydrolase 1 is... 29 0.91
gi|45580700 ectonucleoside triphosphate diphosphohydrolase 1 iso... 29 0.91
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 28 2.0
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 28 2.0
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 28 2.0
gi|166197702 ectonucleoside triphosphate diphosphohydrolase 3 [H... 28 2.0
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 28 2.0
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 28 2.0
gi|4504993 leukemia inhibitory factor receptor precursor [Homo s... 27 4.5
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 27 4.5
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 27 4.5
gi|189083786 leukemia inhibitory factor receptor precursor [Homo... 27 4.5
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 27 4.5
gi|197927448 WD repeat domain 6 protein [Homo sapiens] 27 4.5
gi|4502551 calumenin isoform a precursor [Homo sapiens] 26 5.9
gi|4507779 ubiquitin-conjugating enzyme E2E 1 isoform 1 [Homo sa... 26 7.7
gi|73695475 protein BAP28 [Homo sapiens] 26 7.7
>gi|66932890 vanin 3 isoform 3 precursor [Homo sapiens]
Length = 117
Score = 243 bits (620), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV
Sbjct: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
Query: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWRNH 117
LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWRNH
Sbjct: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWRNH 117
>gi|66932888 vanin 3 isoform 1 precursor [Homo sapiens]
Length = 274
Score = 238 bits (606), Expect = 1e-63
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV
Sbjct: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
Query: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR 115
LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR
Sbjct: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR 115
>gi|17865819 vanin 3 isoform 2 precursor [Homo sapiens]
Length = 147
Score = 238 bits (606), Expect = 1e-63
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV
Sbjct: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
Query: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR 115
LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR
Sbjct: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR 115
>gi|17865814 vanin 2 isoform 1 precursor [Homo sapiens]
Length = 520
Score = 179 bits (454), Expect = 4e-46
Identities = 84/115 (73%), Positives = 99/115 (86%)
Query: 1 MIISHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDV 60
M+ S FP VAVFAL+ L VG D+FIAAVYEHAVILPN+TETPVS+E+AL LMN+NID+
Sbjct: 1 MVTSSFPISVAVFALITLQVGTQDSFIAAVYEHAVILPNKTETPVSQEDALNLMNENIDI 60
Query: 61 LEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDPWR 115
LE A+K AA+QGA IIVTPED +YGW FTRE+++PYLEDIPDP VNWIPC+DP R
Sbjct: 61 LETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDPHR 115
>gi|223633991 vanin 1 precursor [Homo sapiens]
Length = 513
Score = 149 bits (376), Expect = 5e-37
Identities = 70/109 (64%), Positives = 80/109 (73%)
Query: 4 SHFPKCVAVFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDVLEK 63
+ P VA+ DTF AAVYEHA ILPN T TPVS+EEAL LMN+N+D+LE
Sbjct: 3 TQLPAYVAILLFYVSRASCQDTFTAAVYEHAAILPNATLTPVSREEALALMNRNLDILEG 62
Query: 64 AVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRD 112
A+ AA QGAHIIVTPED IYGW F R+S+YPYLEDIPDP VNWIPC +
Sbjct: 63 AITSAADQGAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNN 111
>gi|17865816 vanin 2 isoform 2 [Homo sapiens]
Length = 467
Score = 107 bits (268), Expect = 2e-24
Identities = 46/62 (74%), Positives = 55/62 (88%)
Query: 54 MNKNIDVLEKAVKLAAKQGAHIIVTPEDGIYGWIFTRESIYPYLEDIPDPGVNWIPCRDP 113
MN+NID+LE A+K AA+QGA IIVTPED +YGW FTRE+++PYLEDIPDP VNWIPC+DP
Sbjct: 1 MNENIDILETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDP 60
Query: 114 WR 115
R
Sbjct: 61 HR 62
>gi|4557373 biotinidase precursor [Homo sapiens]
Length = 543
Score = 92.0 bits (227), Expect = 9e-20
Identities = 46/91 (50%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 26 FIAAVYEHAVILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAAKQGAHIIVTPEDGIYG 85
++AAVYEH IL +S++EAL LMN+N+D+ E+ V AA++ IIV PEDGI+G
Sbjct: 58 YVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHG 117
Query: 86 WIFTRESIYPYLEDIPDPG-VNWIPCRDPWR 115
+ FTR SIYP+L+ +P P V W PC +P R
Sbjct: 118 FNFTRTSIYPFLDFMPSPQVVRWNPCLEPHR 148
>gi|147905700 ectonucleoside triphosphate diphosphohydrolase 1
isoform 2 [Homo sapiens]
Length = 517
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 53 LMNKNIDVLEKAVKLAAK--QGAHIIVTPEDGIYGWI 87
L ++ +DV+E+++ QGA II E+G YGWI
Sbjct: 151 LADRVLDVVERSLSNYPFDFQGARIITGQEEGAYGWI 187
>gi|45580700 ectonucleoside triphosphate diphosphohydrolase 1
isoform 1 [Homo sapiens]
Length = 510
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 53 LMNKNIDVLEKAVKLAAK--QGAHIIVTPEDGIYGWI 87
L ++ +DV+E+++ QGA II E+G YGWI
Sbjct: 144 LADRVLDVVERSLSNYPFDFQGARIITGQEEGAYGWI 180
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L T + + + H V I+PN T+TP + E L+L + + + +++
Sbjct: 651 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 710
Query: 70 K 70
K
Sbjct: 711 K 711
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L T + + + H V I+PN T+TP + E L+L + + + +++
Sbjct: 653 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 712
Query: 70 K 70
K
Sbjct: 713 K 713
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L T + + + H V I+PN T+TP + E L+L + + + +++
Sbjct: 653 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 712
Query: 70 K 70
K
Sbjct: 713 K 713
>gi|166197702 ectonucleoside triphosphate diphosphohydrolase 3 [Homo
sapiens]
Length = 529
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 71 QGAHIIVTPEDGIYGWIFTRESIYPYLE 98
+GA II E+G+YGWI + +LE
Sbjct: 172 RGAQIISGQEEGVYGWITANYLMGNFLE 199
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal
[Homo sapiens]
Length = 1937
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L T + + + H V I+PN T+TP + E L+L + + + +++
Sbjct: 650 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 709
Query: 70 K 70
K
Sbjct: 710 K 710
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L T + + + H V I+PN T+TP + E L+L + + + +++
Sbjct: 651 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 710
Query: 70 K 70
K
Sbjct: 711 K 711
>gi|4504993 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 53 LMNKNIDVLEKAVKLAAKQGAHIIVTPEDGIYGWI 87
L +N+ + + + ++A G +++ T ED I+G +
Sbjct: 292 LDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTV 326
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 12 VFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEAL 51
V A+ LSVGA AA EH+ P E P+ +E AL
Sbjct: 1087 VSAMALLSVGAEQAQAAAAREHS---PRPAEEPMEQEPAL 1123
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 12 VFALLALSVGALDTFIAAVYEHAVILPNRTETPVSKEEAL 51
V A+ LSVGA AA EH+ P E P+ +E AL
Sbjct: 1086 VSAMALLSVGAEQAQAAAAREHS---PRPAEEPMEQEPAL 1122
>gi|189083786 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 53 LMNKNIDVLEKAVKLAAKQGAHIIVTPEDGIYGWI 87
L +N+ + + + ++A G +++ T ED I+G +
Sbjct: 292 LDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTV 326
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 VFALLALSVGALDTFIAAVYEHAV--ILPNRTETPVSKEEALLLMNKNIDVLEKAVKLAA 69
V AL ++ L + + + H V I+PN T+TP + E +L+L + + + +++
Sbjct: 648 VSALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRCNGVLEGIRICR 707
Query: 70 K 70
K
Sbjct: 708 K 708
>gi|197927448 WD repeat domain 6 protein [Homo sapiens]
Length = 1151
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 72 GAHIIVTPEDGIYGWIFTRE-SIYPYLEDIPDPGVNWI 108
G ++ T DG Y +F R+ + P L G+NW+
Sbjct: 609 GGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCRGMNWL 646
>gi|4502551 calumenin isoform a precursor [Homo sapiens]
Length = 315
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 80 EDGIYGWIFTRESIYPYLEDIPDP 103
EDG+ W + + Y Y+ D PDP
Sbjct: 120 EDGLVSWEEYKNATYGYVLDDPDP 143
>gi|4507779 ubiquitin-conjugating enzyme E2E 1 isoform 1 [Homo
sapiens]
Length = 193
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 41 TETPVSKEEALLLMNKNIDVLEKAVKLAAKQGAHIIVTPE---------DGIYGW 86
T TP K+E+ + M+KN +L + K K+ A I + P D IY W
Sbjct: 26 TNTP-KKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW 79
>gi|73695475 protein BAP28 [Homo sapiens]
Length = 2144
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 4 SHFPKCVAVFALLALSVGALDTFIAAV 30
+HFP + VF+LL + L++ I AV
Sbjct: 721 THFPFAIRVFSLLQKKIKKLESVITAV 747
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,504,751
Number of Sequences: 37866
Number of extensions: 164897
Number of successful extensions: 346
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 24
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.