Guide to the Human Genome
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Name: VNN3 Sequence: fasta or formatted (274aa) NCBI GI: 66932888
Description:

vanin 3 isoform 1 precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [147aa] vanin 3 isoform 2 precursor
alt prot [117aa] vanin 3 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         20           2
 C cysteine            2.9          8           1
 D aspartate           6.6         18           1
 E glutamate           4.4         12           2
 F phenylalanine       6.6         18           1
 G glycine             4.7         13           1
 H histidine           2.6          7           1
 I isoleucine          7.3         20           2
 K lysine              4.7         13           2
 L leucine             7.7         21           3
 M methionine          0.7          2           1
 N asparagine          3.6         10           1
 P proline             8.8         24           2
 Q glutamine           4.0         11           2
 R arginine            3.6         10           1
 S serine              5.8         16           2
 T threonine           6.2         17           2
 V valine              7.3         20           4
 W tryptophan          1.5          4           1
 Y tyrosine            3.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vanin 3 isoform 1 precursor 
VNN2                  0.588   vanin 2 isoform 1 precursor 
VNN1                  0.569   vanin 1 precursor 
VNN2                  0.456   vanin 2 isoform 2 
VNN3                  0.391   vanin 3 isoform 2 precursor 
VNN3                  0.389   vanin 3 isoform 3 precursor 
BTD                   0.356   biotinidase precursor 
NIT2                  0.046   nitrilase family, member 2 
GBA2                  0.018   bile acid beta-glucosidase 
NIT1                  0.015   nitrilase 1 
TRIM71                0.009   tripartite motif-containing 71 
SLAMF9                0.009   SLAM family member 9 isoform 1 
ENTPD1                0.007   ectonucleoside triphosphate diphosphohydrolase 1 is...
ENTPD1                0.007   ectonucleoside triphosphate diphosphohydrolase 1 iso...
MLL                   0.005   myeloid/lymphoid or mixed-lineage leukemia protein [...
KDM5B                 0.005   jumonji, AT rich interactive domain 1B 
LOC100133760          0.005   PREDICTED: similar to Jumonji, AT rich interactive ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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