Guide to the Human Genome
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Name: VNN2 Sequence: fasta or formatted (467aa) NCBI GI: 17865816
Description:

vanin 2 isoform 2

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [520aa] vanin 2 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         25           2
 C cysteine            2.6         12           2
 D aspartate           3.6         17           1
 E glutamate           5.6         26           2
 F phenylalanine       6.2         29           2
 G glycine             6.4         30           1
 H histidine           2.8         13           2
 I isoleucine          4.9         23           2
 K lysine              4.7         22           2
 L leucine            10.3         48           3
 M methionine          2.4         11           1
 N asparagine          6.2         29           1
 P proline             5.6         26           2
 Q glutamine           2.6         12           1
 R arginine            3.9         18           4
 S serine              5.6         26           2
 T threonine           8.4         39           2
 V valine              6.9         32           2
 W tryptophan          1.5          7           1
 Y tyrosine            4.7         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vanin 2 isoform 2 
VNN2                  1.000   vanin 2 isoform 1 precursor 
VNN1                  0.622   vanin 1 precursor 
BTD                   0.330   biotinidase precursor 
VNN3                  0.264   vanin 3 isoform 1 precursor 
VNN3                  0.087   vanin 3 isoform 3 precursor 
VNN3                  0.087   vanin 3 isoform 2 precursor 
NIT2                  0.027   nitrilase family, member 2 
NIT1                  0.010   nitrilase 1 
GDPD1                 0.006   glycerophosphodiester phosphodiesterase domain conta...
UPB1                  0.005   beta-ureidopropionase 
MAP4                  0.004   microtubule-associated protein 4 isoform 4 
MAP4                  0.004   microtubule-associated protein 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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