Guide to the Human Genome
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Name: VNN3 Sequence: fasta or formatted (117aa) NCBI GI: 66932890
Description:

vanin 3 isoform 3 precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [147aa] vanin 3 isoform 2 precursor
alt prot [274aa] vanin 3 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         12           2
 C cysteine            1.7          2           1
 D aspartate           5.1          6           1
 E glutamate           6.8          8           2
 F phenylalanine       3.4          4           1
 G glycine             4.3          5           1
 H histidine           3.4          4           1
 I isoleucine         10.3         12           2
 K lysine              5.1          6           1
 L leucine             9.4         11           3
 M methionine          1.7          2           1
 N asparagine          4.3          5           1
 P proline             7.7          9           1
 Q glutamine           0.9          1           1
 R arginine            3.4          4           1
 S serine              3.4          4           1
 T threonine           4.3          5           1
 V valine              8.5         10           1
 W tryptophan          2.6          3           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vanin 3 isoform 3 precursor 
VNN3                  0.977   vanin 3 isoform 1 precursor 
VNN3                  0.977   vanin 3 isoform 2 precursor 
VNN2                  0.706   vanin 2 isoform 1 precursor 
VNN1                  0.569   vanin 1 precursor 
VNN2                  0.376   vanin 2 isoform 2 
BTD                   0.307   biotinidase precursor 
ENTPD1                0.018   ectonucleoside triphosphate diphosphohydrolase 1 is...
ENTPD1                0.018   ectonucleoside triphosphate diphosphohydrolase 1 iso...
MYH1                  0.014   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.014   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.014   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ENTPD3                0.014   ectonucleoside triphosphate diphosphohydrolase 3 [H...
MYH8                  0.014   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.014   myosin, heavy polypeptide 4, skeletal muscle 
LIFR                  0.009   leukemia inhibitory factor receptor precursor 
HDAC5                 0.009   histone deacetylase 5 isoform 3 
HDAC5                 0.009   histone deacetylase 5 isoform 1 
LIFR                  0.009   leukemia inhibitory factor receptor precursor [Homo...
MYH3                  0.009   myosin, heavy chain 3, skeletal muscle, embryonic [H...
WDR6                  0.009   WD repeat domain 6 protein 
CALU                  0.005   calumenin isoform a precursor 
UBE2E1                0.005   ubiquitin-conjugating enzyme E2E 1 isoform 1 
HEATR1                0.005   protein BAP28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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