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Search of human proteins with 66392146
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66392146 RNA U, small nuclear RNA export adaptor
(phosphorylation regulated) [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66392146 RNA U, small nuclear RNA export adaptor (phosphoryla... 785 0.0
gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens] 38 0.014
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 38 0.014
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 37 0.024
gi|239582751 sterile alpha motif domain containing 4 isoform 3 [... 37 0.031
gi|239582749 sterile alpha motif domain containing 4 isoform 2 [... 37 0.031
gi|239582747 sterile alpha motif domain containing 4 isoform 1 [... 37 0.031
gi|4505257 moesin [Homo sapiens] 35 0.12
gi|4557509 cylicin 2 [Homo sapiens] 34 0.20
gi|221219020 NYD-SP11 protein [Homo sapiens] 34 0.26
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 34 0.26
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 34 0.26
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 33 0.34
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 33 0.34
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 33 0.45
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 33 0.45
gi|169172682 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|169172911 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|169172807 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 32 0.76
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 32 0.76
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 32 0.76
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 32 0.76
gi|7705320 hepatoma-derived growth factor, related protein 3 [Ho... 32 1.00
gi|45439370 TAO kinase 1 [Homo sapiens] 32 1.00
gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens] 32 1.00
gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens] 32 1.00
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 32 1.3
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 32 1.3
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 32 1.3
>gi|66392146 RNA U, small nuclear RNA export adaptor
(phosphorylation regulated) [Homo sapiens]
Length = 394
Score = 785 bits (2026), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV 60
MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV
Sbjct: 1 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV 60
Query: 61 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA 120
ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA
Sbjct: 61 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA 120
Query: 121 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH 180
VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH
Sbjct: 121 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH 180
Query: 181 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE 240
GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE
Sbjct: 181 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE 240
Query: 241 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS 300
PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS
Sbjct: 241 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS 300
Query: 301 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE 360
EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE
Sbjct: 301 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE 360
Query: 361 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF 394
ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF
Sbjct: 361 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF 394
>gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens]
Length = 231
Score = 38.1 bits (87), Expect = 0.014
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 45/248 (18%)
Query: 128 DAVATELGILGM--EGTIDRSRQSETYNYLL---AKKLRKESQEHTKDL---DKELDEYM 179
DA+ ++ +L + E IDR+ Q+E K+L +E Q K L + E+++Y
Sbjct: 2 DAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKYS 61
Query: 180 HGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQ 239
K + E E G ++ + + EM K I AEDS K +
Sbjct: 62 ESEK--AADESERGMKVIENRAMKDEEKMELQEMQLKEAKHI-AEDSDRKYEE------- 111
Query: 240 EPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSI 299
+AR + I+ + +E E AEV + SR R L+
Sbjct: 112 ------VARKLVILEGE--LERSEERAEVAE---------SRARQ--------LEEELRT 146
Query: 300 SEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTN 359
++ +K + + +++EY K+ + ++L +K+K+A F E E D
Sbjct: 147 MDQALKSL--MASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLE 204
Query: 360 EALASLDE 367
E LAS E
Sbjct: 205 ETLASAKE 212
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 38.1 bits (87), Expect = 0.014
Identities = 56/290 (19%), Positives = 113/290 (38%), Gaps = 56/290 (19%)
Query: 145 RSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKE--------------- 189
R + E N +L + +K+ Q H +DL+++LDE +K+ ++
Sbjct: 930 RVEEEEERNQILQNE-KKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEIL 988
Query: 190 --EENGQGHLKRKRPVKDRL----GNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKK 243
E+ +K K+ ++DR+ E K + + QE + ++ RL++ +K
Sbjct: 989 LLEDQNSKFIKEKKLMEDRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEK 1048
Query: 244 -----------------DLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPG 286
DL ++ + ++L + E E G L G
Sbjct: 1049 TRQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKEEELQGAL--ARGDDETLHK 1106
Query: 287 GVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKR----RTQVLGKKMKQAIKSLN 342
L +++ + E +D E++K NK +KR + L +++ + +
Sbjct: 1107 NNALKVVRELQAQIAELQED---FESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTA 1163
Query: 343 FQEDDDTSRETFASDTNEAL--------ASLDESQEGHAEAKLEAEEAIE 384
Q++ T RE ++ +AL A + + ++ HA A E E +E
Sbjct: 1164 AQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLE 1213
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 37.4 bits (85), Expect = 0.024
Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 48/272 (17%)
Query: 128 DAVATELGILGM--EGTIDRSRQSETYNYLL---AKKLRKESQEHTKDL---DKELDEYM 179
DA+ ++ +L + E IDR+ Q+E K+L +E Q K L + E+++Y
Sbjct: 2 DAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKYS 61
Query: 180 HGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAED---SQEKVADEISF 236
K+ K E+ ++ D + +N R ++ E+ +QE++A +
Sbjct: 62 ESVKEAQEKLEQ-------AEKKATDAEADVASLNR--RIQLVEEELDRAQERLATALQ- 111
Query: 237 RLQEPKK--DLIARVVRIIGNKKAI-ELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLL 293
+L+E +K D R +++I N+ E ME E++ I S R+
Sbjct: 112 KLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKY--------- 162
Query: 294 KNTPSISEEQIKDIFYIENQKEYENKKA----ARKRRTQVLGKKMKQAIKSLNFQEDDDT 349
EE + + +E + E ++A +R R+ + + M QA+KSL E++ +
Sbjct: 163 -------EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYS 215
Query: 350 SRETFASDTNEALASLDESQEGHAEAKLEAEE 381
++E D E L E + AE + E E
Sbjct: 216 TKE----DKYEEEIKLLEEKLKEAETRAEFAE 243
>gi|239582751 sterile alpha motif domain containing 4 isoform 3
[Homo sapiens]
Length = 345
Score = 37.0 bits (84), Expect = 0.031
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 6 GDMEDGQLSDSDSDMTVAP---SDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVES 62
G ++ QLS D ++ VAP D P Q +V+G +S Y +
Sbjct: 60 GGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE--ENISSYLQLID 117
Query: 63 VDSSEESFSDSDDDSCL-WKRKRQKCFNPPPKPEPFQ-----------FGQSSQKP---P 107
E+F+++ L WK++ QK F P+ FGQS+ P
Sbjct: 118 KCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGS 177
Query: 108 VAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRK 162
V GG N Q +++ + LG+LG G + ++++ T + K+ R+
Sbjct: 178 VGGGMGRRN--PRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQ 230
>gi|239582749 sterile alpha motif domain containing 4 isoform 2
[Homo sapiens]
Length = 629
Score = 37.0 bits (84), Expect = 0.031
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 6 GDMEDGQLSDSDSDMTVAP---SDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVES 62
G ++ QLS D ++ VAP D P Q +V+G +S Y +
Sbjct: 380 GGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE--ENISSYLQLID 437
Query: 63 VDSSEESFSDSDDDSCL-WKRKRQKCFNPPPKPEPFQ-----------FGQSSQKP---P 107
E+F+++ L WK++ QK F P+ FGQS+ P
Sbjct: 438 KCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGS 497
Query: 108 VAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRK 162
V GG N Q +++ + LG+LG G + ++++ T + K+ R+
Sbjct: 498 VGGGMGRRN--PRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQ 550
>gi|239582747 sterile alpha motif domain containing 4 isoform 1
[Homo sapiens]
Length = 717
Score = 37.0 bits (84), Expect = 0.031
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 6 GDMEDGQLSDSDSDMTVAP---SDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVES 62
G ++ QLS D ++ VAP D P Q +V+G +S Y +
Sbjct: 468 GGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE--ENISSYLQLID 525
Query: 63 VDSSEESFSDSDDDSCL-WKRKRQKCFNPPPKPEPFQ-----------FGQSSQKP---P 107
E+F+++ L WK++ QK F P+ FGQS+ P
Sbjct: 526 KCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGS 585
Query: 108 VAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRK 162
V GG N Q +++ + LG+LG G + ++++ T + K+ R+
Sbjct: 586 VGGGMGRRN--PRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQ 638
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 35.0 bits (79), Expect = 0.12
Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 23/243 (9%)
Query: 145 RSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRPVK 204
R R+ +T K +E ++H K +++ + E ++M KE+E + + K +
Sbjct: 293 RRRKPDTIEVQQMKAQARE-EKHQKQMERAMLENEKKKREMAEKEKEKIE---REKEELM 348
Query: 205 DRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLME 264
+RL E K + E+ + Q + A E+ QE K+ +A +L E
Sbjct: 349 ERLKQIEEQTKKAQQEL---EEQTRRALELE---QERKR----------AQSEAEKLAKE 392
Query: 265 TAEVEQ-NGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAAR 323
E E+ L + +++T + L + + T IS+ ++ E++ K
Sbjct: 393 RQEAEEAKEALLQASRDQKKTQEQLALEMAELTARISQLEMARQKKESEAVEWQQKAQMV 452
Query: 324 KRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAKLEAEEAI 383
+ + ++K A+ + + E + ++ D N A AS D + A+ + E E
Sbjct: 453 QEDLEKTRAELKTAMSTPHVAEPAENEQD--EQDENGAEASADLRADAMAKDRSEEERTT 510
Query: 384 EVD 386
E +
Sbjct: 511 EAE 513
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 34.3 bits (77), Expect = 0.20
Identities = 59/272 (21%), Positives = 106/272 (38%), Gaps = 58/272 (21%)
Query: 128 DAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGK--KM 185
D+ A E+G G D++ Q +T + K K+ + KD++K +E + K K
Sbjct: 108 DSKAAEIGKKGE----DKTTQKDTTDSESELKQGKKDSKKGKDIEKGKEEKLDAKKDSKK 163
Query: 186 GSKEEENGQGHLKRKRPVK-----DRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE 240
G K+ E G+ K D ++ + N KG+ T + ++ ++ S + ++
Sbjct: 164 GKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSN-KGKDSATESEGEKGGTEKDSKKGKK 222
Query: 241 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS 300
K G AIEL A+ +++
Sbjct: 223 DSKK---------GKDSAIELQAVKADEKKD----------------------------- 244
Query: 301 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE 360
E+ KD K E+K A + + GKK K+ S + DD +E+ T +
Sbjct: 245 EDGKKDA-----NKGDESKDAKKDAKEIKKGKKDKKKPSSTDSDSKDDVKKESKKDATKD 299
Query: 361 A--LASLDESQEGHAEAKLEAEEAIEVDHSHD 390
A +A D +E A++K +A++ + D D
Sbjct: 300 AKKVAKKDTEKES-ADSKKDAKKNAKKDAKKD 330
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 33.9 bits (76), Expect = 0.26
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 139 MEGTIDRSRQSETYNYLLAKKLRKESQ---EHTKDLDKELDEYMHGGKKMGSKEEENGQG 195
ME +D + E+ + ++ +E + E ++ ++E E G +K KEEE +
Sbjct: 2230 MESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKK 2289
Query: 196 HLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGN 255
K K+ K+ + + E+ ++ + EI +E+ E ++DE ++ + R I+
Sbjct: 2290 KKKEKK--KEEVQEKEEV-FEEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEILKK 2346
Query: 256 KKAIELLMETAEVEQNGG---LFIMNGSRRRTPGGVFLNLLKN------TPSISEEQIKD 306
+K + L E G L I+ G + L +LK+ + ++ ++
Sbjct: 2347 EKQFK-LQEQRRKSLRGRERVLSILRGVPHGKGRAIRLGVLKSPLKKLMSTALEMKEKTP 2405
Query: 307 IFYIENQKEYENKKA 321
+ E Q +E+KKA
Sbjct: 2406 VPVPEKQISWEDKKA 2420
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 33.9 bits (76), Expect = 0.26
Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 29/271 (10%)
Query: 144 DRSRQSETYNYLLAKKLRKESQEH-TKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRP 202
D ++ N + K L +E + + + D D D+ GKK K+ E G + K
Sbjct: 1222 DDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQ 1281
Query: 203 VKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPK----KDLIARVVRIIGNKKA 258
V + E + K RY + V+D S ++ K K++ R R + ++ +
Sbjct: 1282 VNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDS 1341
Query: 259 IELLMETAEVEQNGGLFIMNGS----RRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQK 314
E ++ +++G ++ S R RT L +N S +++ + ++
Sbjct: 1342 -----EDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDS 1396
Query: 315 EYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSR---------------ETFASDTN 359
ENK + + + ++ ++ + ++++D S+ + ++T
Sbjct: 1397 SSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQ 1456
Query: 360 EALASLDESQEGHAEAKLEAEEAIEVDHSHD 390
AL +E ++ AE + E E+ EV D
Sbjct: 1457 NALKEEEERRKRIAEREREREKLREVIEIED 1487
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 33.9 bits (76), Expect = 0.26
Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 29/271 (10%)
Query: 144 DRSRQSETYNYLLAKKLRKESQEH-TKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRP 202
D ++ N + K L +E + + + D D D+ GKK K+ E G + K
Sbjct: 1260 DDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQ 1319
Query: 203 VKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPK----KDLIARVVRIIGNKKA 258
V + E + K RY + V+D S ++ K K++ R R + ++ +
Sbjct: 1320 VNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDS 1379
Query: 259 IELLMETAEVEQNGGLFIMNGS----RRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQK 314
E ++ +++G ++ S R RT L +N S +++ + ++
Sbjct: 1380 -----EDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDS 1434
Query: 315 EYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSR---------------ETFASDTN 359
ENK + + + ++ ++ + ++++D S+ + ++T
Sbjct: 1435 SSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQ 1494
Query: 360 EALASLDESQEGHAEAKLEAEEAIEVDHSHD 390
AL +E ++ AE + E E+ EV D
Sbjct: 1495 NALKEEEERRKRIAEREREREKLREVIEIED 1525
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 33.5 bits (75), Expect = 0.34
Identities = 62/313 (19%), Positives = 131/313 (41%), Gaps = 46/313 (14%)
Query: 104 QKPPVAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTID----RSRQSETYNYLLAKK 159
Q+ V ++I N+ + + ++ ++E I + GT++ R+ + + + ++
Sbjct: 363 QEQIVQKNQEIKNMKLELTNSKQKERQSSE-EIKQLMGTVEELQKRNHKDSQFETDIVQR 421
Query: 160 LRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRY 219
+ +E+Q + L ELDE M+G + + K+E Q H+ + +K R E +
Sbjct: 422 MEQETQRKLEQLRAELDE-MYGQQIVQMKQELIRQ-HMAQMEEMKTRHKGEMENALRSYS 479
Query: 220 EITAEDSQEKV----ADEISFRLQE---PKKDLIARVVRIIGNKKAIELLMETAEVEQNG 272
IT + Q K+ +E++ +LQ+ K+ L + I+ K A++ +E E +
Sbjct: 480 NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSF 539
Query: 273 GLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQK-EYENKKAARKRRTQVLG 331
+ +R+ + S E K + +E+ K E + +RK
Sbjct: 540 SREQIQRARQ---------TIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKE------ 584
Query: 332 KKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDESQE------------GHAEAKLEA 379
++K + N++ E + N L + ESQE H E +
Sbjct: 585 LELKHEAEVTNYK----IKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 640
Query: 380 EEAIEVDHSHDLD 392
+E +E++H +++
Sbjct: 641 KEDLEIEHRINIE 653
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 33.5 bits (75), Expect = 0.34
Identities = 62/313 (19%), Positives = 131/313 (41%), Gaps = 46/313 (14%)
Query: 104 QKPPVAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTID----RSRQSETYNYLLAKK 159
Q+ V ++I N+ + + ++ ++E I + GT++ R+ + + + ++
Sbjct: 363 QEQIVQKNQEIKNMKLELTNSKQKERQSSE-EIKQLMGTVEELQKRNHKDSQFETDIVQR 421
Query: 160 LRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRY 219
+ +E+Q + L ELDE M+G + + K+E Q H+ + +K R E +
Sbjct: 422 MEQETQRKLEQLRAELDE-MYGQQIVQMKQELIRQ-HMAQMEEMKTRHKGEMENALRSYS 479
Query: 220 EITAEDSQEKV----ADEISFRLQE---PKKDLIARVVRIIGNKKAIELLMETAEVEQNG 272
IT + Q K+ +E++ +LQ+ K+ L + I+ K A++ +E E +
Sbjct: 480 NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSF 539
Query: 273 GLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQK-EYENKKAARKRRTQVLG 331
+ +R+ + S E K + +E+ K E + +RK
Sbjct: 540 SREQIQRARQ---------TIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKE------ 584
Query: 332 KKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDESQE------------GHAEAKLEA 379
++K + N++ E + N L + ESQE H E +
Sbjct: 585 LELKHEAEVTNYK----IKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 640
Query: 380 EEAIEVDHSHDLD 392
+E +E++H +++
Sbjct: 641 KEDLEIEHRINIE 653
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 33.1 bits (74), Expect = 0.45
Identities = 62/302 (20%), Positives = 119/302 (39%), Gaps = 39/302 (12%)
Query: 112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKK------LRKESQ 165
KKI N+ + ++ Q + E T + T LA+K L+++
Sbjct: 578 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRD 637
Query: 166 EHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRP----VKDRLGNRPEMNYKGRYEI 221
++ +E+D Y K + K QG L K +K+ + K
Sbjct: 638 RDEREKQEEIDNYKKDLKDLKEKVSLL-QGDLSEKEASLLDLKEHASSLASSGLK----- 691
Query: 222 TAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETA----------EVEQN 271
+DS+ K + L++ K++ + ++ KKA E +E +E+
Sbjct: 692 --KDSRLKT---LEIALEQKKEECLKMESQL---KKAHEAALEARASPEMSDRIQHLERE 743
Query: 272 GGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAAR-KRRTQVL 330
+ S+ + L +LK + ++ K I +E Q + +NKK A K + QV
Sbjct: 744 ITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 803
Query: 331 GKKMKQAIKSLNFQED--DDTSRETFAS--DTNEALASLDESQEGHAEAKLEAEEAIEVD 386
KK Q ++ +ED +D+S++ S ++ + L+E+ + E E + +
Sbjct: 804 KKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQE 863
Query: 387 HS 388
S
Sbjct: 864 ES 865
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 33.1 bits (74), Expect = 0.45
Identities = 62/302 (20%), Positives = 119/302 (39%), Gaps = 39/302 (12%)
Query: 112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKK------LRKESQ 165
KKI N+ + ++ Q + E T + T LA+K L+++
Sbjct: 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRD 609
Query: 166 EHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRP----VKDRLGNRPEMNYKGRYEI 221
++ +E+D Y K + K QG L K +K+ + K
Sbjct: 610 RDEREKQEEIDNYKKDLKDLKEKVSLL-QGDLSEKEASLLDLKEHASSLASSGLK----- 663
Query: 222 TAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETA----------EVEQN 271
+DS+ K + L++ K++ + ++ KKA E +E +E+
Sbjct: 664 --KDSRLKT---LEIALEQKKEECLKMESQL---KKAHEAALEARASPEMSDRIQHLERE 715
Query: 272 GGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAAR-KRRTQVL 330
+ S+ + L +LK + ++ K I +E Q + +NKK A K + QV
Sbjct: 716 ITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 775
Query: 331 GKKMKQAIKSLNFQED--DDTSRETFAS--DTNEALASLDESQEGHAEAKLEAEEAIEVD 386
KK Q ++ +ED +D+S++ S ++ + L+E+ + E E + +
Sbjct: 776 KKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQE 835
Query: 387 HS 388
S
Sbjct: 836 ES 837
>gi|169172682 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.45
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 57 YRAVESV-DSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSS--QKPPVAGGKK 113
YR + S DS E +D++ ++ L + PPK + G S+ +KP ++G
Sbjct: 4 YRRLRSPRDSQTEPQNDNEGETSLATTQMN-----PPKRRQVEQGPSTGAKKPSISGAPH 58
Query: 114 INNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHT 168
+N+ L + QD+ EL I+ +GT R E L + + + + E+T
Sbjct: 59 LNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENT 113
>gi|169172911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.45
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 57 YRAVESV-DSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSS--QKPPVAGGKK 113
YR + S DS E +D++ ++ L + PPK + G S+ +KP ++G
Sbjct: 4 YRRLRSPRDSQTEPQNDNEGETSLATTQMN-----PPKRRQVEQGPSTGAKKPSISGAPH 58
Query: 114 INNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHT 168
+N+ L + QD+ EL I+ +GT R E L + + + + E+T
Sbjct: 59 LNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENT 113
>gi|169172807 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.1 bits (74), Expect = 0.45
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 57 YRAVESV-DSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSS--QKPPVAGGKK 113
YR + S DS E +D++ ++ L + PPK + G S+ +KP ++G
Sbjct: 4 YRRLRSPRDSQTEPQNDNEGETSLATTQMN-----PPKRRQVEQGPSTGAKKPSISGAPH 58
Query: 114 INNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHT 168
+N+ L + QD+ EL I+ +GT R E L + + + + E+T
Sbjct: 59 LNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENT 113
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 32.3 bits (72), Expect = 0.76
Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 38/280 (13%)
Query: 115 NNIWGAVLQEQNQDAVATELGILGMEGTI-----------DRSRQSETYNYLLAKKLRKE 163
N +W + Q+Q + E I E I ++ R+ E + +K+R++
Sbjct: 276 NELWNRLNQQQEEKMWRQEEKIQEREEKIQEQEEKIREQEEKMRRQEEMMWEKEEKMRRQ 335
Query: 164 SQEHTKDLDK--ELDEYMHGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEI 221
+ + +K EL+E MH +K+ +EE+ + + ++++ + + R E
Sbjct: 336 EEMMWEKEEKIRELEEKMHEQEKIREQEEKR-----QEEEKIREQEKRQEQEAKMWRQEE 390
Query: 222 TAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSR 281
+ +EK+ ++ ++ +K +G ++ E EQ + R
Sbjct: 391 KIREQEEKIREQEEMMQEQEEK---------MGEQEEKMWEQEEEMQEQEEKM------R 435
Query: 282 RRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSL 341
R+ + + I E++ K E +E E K ++ + KM++ + +
Sbjct: 436 RQEE-----KIREQEKKIREQEEKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEKM 490
Query: 342 NFQEDDDTSRETFASDTNEALASLDESQEGHAEAKLEAEE 381
QE+ +E + E + +E + E E EE
Sbjct: 491 RRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEE 530
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 32.3 bits (72), Expect = 0.76
Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)
Query: 12 QLSDSDS-DMTVAPSDRPLQL----PKVLGGDSAMRAFQNTATACAPVSH-YRAVESVDS 65
+L D+D+ D++ D L+L P+ + RA + A A + YR +E +
Sbjct: 46 RLRDTDTLDLSGPARDFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEE 105
Query: 66 SEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGAVLQEQ 125
S E S KRK++K + E + K G K+ + +
Sbjct: 106 SSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTGGSKQQTE------KPE 159
Query: 126 NQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKM 185
++D E T Q A+++R+ ++ T+++ + D+
Sbjct: 160 SEDE---------WERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDK-------- 202
Query: 186 GSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVAD 232
K E Q LK +DR PE+ K R E A+ +EK+ D
Sbjct: 203 --KAYEEAQKRLKMAE--EDRKAMIPELRKKSRREYLAKREREKLED 245
Score = 31.6 bits (70), Expect = 1.3
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 122 LQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHG 181
L E+N+ E E T+ R+ S K LRK+ +E ++ E + G
Sbjct: 90 LLEKNRSYRLLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEASEKGKKKTG 149
Query: 182 GKKMGSK--EEENGQGHLKRKR----PVKDRLGNRPEMNYKGRYEITAEDSQEKVADEIS 235
G K ++ E E+ +R+R +D R K R E S +K +E
Sbjct: 150 GSKQQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQ 209
Query: 236 FRLQEPKKDLIARV 249
RL+ ++D A +
Sbjct: 210 KRLKMAEEDRKAMI 223
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 32.3 bits (72), Expect = 0.76
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 241 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIM------NGSRRRTPGGVFLNLLK 294
PK I+ I N+KA +L TA V+ + N S R P F+ K
Sbjct: 58 PKSTYISSAADNIRNQKAT-ILAGTANVKVGSRTPVEASHPVENASVPR-PSSHFVRRKK 115
Query: 295 NTPSISEEQIKDIFYIENQKEYENKKAARKRR--TQVLGKKMKQAIKSLNFQEDDDTSRE 352
+ P ++++ F +QKE + RK + T V ++ S+N + E
Sbjct: 116 SEP---DDELLFDFLNSSQKEPTGRVEIRKEKGKTPVFQSSQTSSVSSVNPSVTTIKTIE 172
Query: 353 --TFASDTNEALASLDESQEGHAEAKLE 378
+F S T+EA ++ D S EG E+ E
Sbjct: 173 ENSFGSQTHEAASNSDSSHEGQEESSKE 200
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 32.3 bits (72), Expect = 0.76
Identities = 47/239 (19%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 159 KLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGR 218
KL++E+++H+ ++ E ++ +KEEE Q L + K R ++++
Sbjct: 283 KLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTED 342
Query: 219 YEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMN 278
+ E +E + ++I ++++ A + ++KA++ L+ ++ L +N
Sbjct: 343 QKAEVEQHKETLKNQI----VGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVN 398
Query: 279 GSRRRTP-----GGVFLNL---LKNTPSISEEQIKDIFYIE-------------NQKEYE 317
++++T NL ++N +++Q K IF++E QK
Sbjct: 399 ATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLM 458
Query: 318 NKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 376
N + + R TQ+ + K A + ++ + E SD N +L E+Q+ + K
Sbjct: 459 NMEDIKVRETQIFDYRKKIAESEIKLKQQQNL-YEAVRSDRNLYSKNLVEAQDEITDMK 516
>gi|7705320 hepatoma-derived growth factor, related protein 3 [Homo
sapiens]
Length = 203
Score = 32.0 bits (71), Expect = 1.00
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 295 NTPSISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKK-MKQAIKSLNFQEDDDTSRET 353
NT S E+ D + + + +N+KA KR+ KK KQ+ KS ++D D E
Sbjct: 116 NTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEE 175
Query: 354 FAS---------DTNEALASLDESQEG 371
S DT + L ++ EG
Sbjct: 176 NKSSSEGGDAGNDTRNTTSDLQKTSEG 202
>gi|45439370 TAO kinase 1 [Homo sapiens]
Length = 1001
Score = 32.0 bits (71), Expect = 1.00
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 122 LQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEY--- 178
+QE QD+ E M G RQ + L KL+ E EH LDK+L+
Sbjct: 451 MQEHEQDSELREQ----MSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDLETQRNN 506
Query: 179 ---------------MHGGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITA 223
M K+ S EE+ Q H++ ++ K L + E + K Y++
Sbjct: 507 FAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQ--KKELNSFLE-SQKREYKL-- 561
Query: 224 EDSQEKVADEISFRLQEPKKD 244
+E++ +E++ PKK+
Sbjct: 562 --RKEQLKEELNENQSTPKKE 580
>gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 1.00
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 298 SISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASD 357
S+SE+Q K EN +A+++R+T + +K + + + ++ E D E A
Sbjct: 379 SLSEQQEKVTRLTENLSALRRLQASKERQTALDNEKDRDSHEDGDYYEVDINGPEILACK 438
Query: 358 TNEALASLDESQEGHAEAKLEAEEAIEVDHSHD 390
+ A+A E +E +A EA E H+ +
Sbjct: 439 YHVAVAEAGELRE-QLKALRSTHEAREAQHAEE 470
>gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens]
Length = 824
Score = 32.0 bits (71), Expect = 1.00
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 298 SISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASD 357
S+SE+Q K EN +A+++R+T + +K + + + ++ E D E A
Sbjct: 379 SLSEQQEKVTRLTENLSALRRLQASKERQTALDNEKDRDSHEDGDYYEVDINGPEILACK 438
Query: 358 TNEALASLDESQEGHAEAKLEAEEAIEVDHSHD 390
+ A+A E +E +A EA E H+ +
Sbjct: 439 YHVAVAEAGELRE-QLKALRSTHEAREAQHAEE 470
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 31.6 bits (70), Expect = 1.3
Identities = 53/236 (22%), Positives = 85/236 (36%), Gaps = 35/236 (14%)
Query: 15 DSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVESVDSSEESFSDSD 74
D D D +A S++ LP ++ +NT T+ +P VE +
Sbjct: 712 DIDLDKPLADSEK---LP--------IQKHRNTETSKSPEKDVPMVEKKSKKPKKKEKKH 760
Query: 75 DDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGAVLQEQNQDAVATEL 134
+ +R ++K K E F S+ PP V + TE
Sbjct: 761 KEK---ERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAP-----APVPSTDECEDAKTEA 812
Query: 135 GILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQ 194
G E + Q + KK RKE +E TK K K+ EE G+
Sbjct: 813 Q--GEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKSK-------KQPPGSEEAAGE 863
Query: 195 GHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVV 250
PV++ ++ + Y + AE+S K+ +I LQE + +A V+
Sbjct: 864 -------PVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVL 912
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 36/229 (15%)
Query: 173 KELDEYMHGGKK-MGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVA 231
KE++E + K+ + SKE E + K+ ++++ M + YE + S E
Sbjct: 748 KEMEEKISNLKEHLASKEVEVAK---LEKQLLEEKAAMTDAMVPRSSYE-KLQSSLESEV 803
Query: 232 DEISFRLQEPKKD----------LIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSR 281
++ +L+E K+ + + V ++ K+ I+ L+++ E E N
Sbjct: 804 SVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKEQEVN---------- 853
Query: 282 RRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSL 341
LL+ EE + Y E+ + E K + K+K+A+ SL
Sbjct: 854 ---------ELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 904
Query: 342 NFQEDDDTSRETFASDTNEAL-ASLDESQEGHAEAKLEAEEAIEVDHSH 389
+ Q TS S EAL + + Q AE K + +E I V H
Sbjct: 905 S-QLSYSTSSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVISVYRMH 952
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 36/229 (15%)
Query: 173 KELDEYMHGGKK-MGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVA 231
KE++E + K+ + SKE E + K+ ++++ M + YE + S E
Sbjct: 737 KEMEEKISNLKEHLASKEVEVAK---LEKQLLEEKAAMTDAMVPRSSYE-KLQSSLESEV 792
Query: 232 DEISFRLQEPKKD----------LIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSR 281
++ +L+E K+ + + V ++ K+ I+ L+++ E E N
Sbjct: 793 SVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKEQEVN---------- 842
Query: 282 RRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSL 341
LL+ EE + Y E+ + E K + K+K+A+ SL
Sbjct: 843 ---------ELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 893
Query: 342 NFQEDDDTSRETFASDTNEAL-ASLDESQEGHAEAKLEAEEAIEVDHSH 389
+ Q TS S EAL + + Q AE K + +E I V H
Sbjct: 894 S-QLSYSTSSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVISVYRMH 941
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,455,211
Number of Sequences: 37866
Number of extensions: 741795
Number of successful extensions: 3026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2910
Number of HSP's gapped (non-prelim): 199
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.