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Search of human proteins with 66346668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo
sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo sa... 525 e-149
gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo sa... 382 e-106
gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo sa... 315 2e-86
gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo sa... 315 2e-86
gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens] 298 3e-81
gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens] 298 3e-81
gi|156627565 Rh-associated glycoprotein [Homo sapiens] 89 4e-18
gi|7706683 Rh family, C glycoprotein [Homo sapiens] 86 3e-17
gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens] 84 1e-16
gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Hom... 31 0.99
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 31 0.99
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo... 31 0.99
gi|76563908 hypothetical protein LOC169436 [Homo sapiens] 29 3.8
gi|24497490 solute carrier family 22 member 4 [Homo sapiens] 29 3.8
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 29 4.9
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 29 4.9
gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo... 28 8.4
>gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo
sapiens]
Length = 267
Score = 525 bits (1353), Expect = e-149
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSC 180
MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSC
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSC 180
Query: 181 HLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 240
HLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV
Sbjct: 181 HLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 240
Query: 241 LLVLHTVWNGNGMFAPKSQNMESTSCG 267
LLVLHTVWNGNGMFAPKSQNMESTSCG
Sbjct: 241 LLVLHTVWNGNGMFAPKSQNMESTSCG 267
>gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo
sapiens]
Length = 266
Score = 382 bits (982), Expect = e-106
Identities = 207/253 (81%), Positives = 207/253 (81%), Gaps = 46/253 (18%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSC 180
MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN------------------ 162
Query: 181 HLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 240
VCCNRVLGIHHISVMHSIFSLLGLLGEITYIV
Sbjct: 163 ----------------------------VCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 194
Query: 241 LLVLHTVWNGNGM 253
LLVLHTVWNGNGM
Sbjct: 195 LLVLHTVWNGNGM 207
>gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo
sapiens]
Length = 354
Score = 315 bits (808), Expect = 2e-86
Identities = 164/166 (98%), Positives = 164/166 (98%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVH 166
MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT H
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYH 166
Score = 106 bits (265), Expect = 2e-23
Identities = 64/105 (60%), Positives = 67/105 (63%), Gaps = 18/105 (17%)
Query: 163 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISV 222
TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLP +
Sbjct: 268 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPDWLPGPPQHWGTQL 327
Query: 223 MHSIFSLLGLLGEITYIVLLVLHTVWNGNGMFAPKSQNMESTSCG 267
H S VW+ + FAPKSQNMESTSCG
Sbjct: 328 GHRDSS-----------------HVWSPD-RFAPKSQNMESTSCG 354
>gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo
sapiens]
Length = 417
Score = 315 bits (808), Expect = 2e-86
Identities = 164/166 (98%), Positives = 164/166 (98%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVH 166
MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT H
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYH 166
Score = 189 bits (479), Expect = 3e-48
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 163 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISV 222
TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISV
Sbjct: 268 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISV 327
Query: 223 MHSIFSLLGLLGEITYIVLLVLHTVWNGNGM 253
MHSIFSLLGLLGEITYIVLLVLHTVWNGNGM
Sbjct: 328 MHSIFSLLGLLGEITYIVLLVLHTVWNGNGM 358
>gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]
Length = 321
Score = 298 bits (763), Expect = 3e-81
Identities = 156/166 (93%), Positives = 159/166 (95%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1 MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVH 166
+SVLIS AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFNT H
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNTDYH 166
Score = 93.2 bits (230), Expect = 2e-19
Identities = 49/74 (66%), Positives = 54/74 (72%)
Query: 135 NLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL 194
N V + +V + +L I TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL
Sbjct: 240 NTYYAVAVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL 299
Query: 195 VAGLISIGGAKCLP 208
VAGLIS+GGAK LP
Sbjct: 300 VAGLISVGGAKYLP 313
>gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]
Length = 417
Score = 298 bits (763), Expect = 3e-81
Identities = 156/166 (93%), Positives = 159/166 (95%)
Query: 1 MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1 MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60
Query: 61 GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61 GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120
Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVH 166
+SVLIS AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFNT H
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNTDYH 166
Score = 153 bits (387), Expect = 1e-37
Identities = 83/119 (69%), Positives = 89/119 (74%)
Query: 135 NLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL 194
N V + +V + +L I TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL
Sbjct: 240 NTYYAVAVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGL 299
Query: 195 VAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLVLHTVWNGNGM 253
VAGLIS+GGAK LP CCNRVLGI H S+M FSLLGLLGEI YIVLLVL TV GNGM
Sbjct: 300 VAGLISVGGAKYLPGCCNRVLGIPHSSIMGYNFSLLGLLGEIIYIVLLVLDTVGAGNGM 358
>gi|156627565 Rh-associated glycoprotein [Homo sapiens]
Length = 409
Score = 89.0 bits (219), Expect = 4e-18
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 9 VRRCLPLCALTLEAALILLFYFFTHY--DASLEDQKGLVASYQVG---------QDLTVM 57
+R PL A+ LE A+I+LF F Y D ++ +Q + +G QD+ VM
Sbjct: 1 MRFTFPLMAIVLEIAMIVLFGLFVEYETDQTVLEQLNITKPTDMGIFFELYPLFQDVHVM 60
Query: 58 AALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLAT 117
+G GFL + +++ +SSV NL + ALG+QW ++ G L Q K I + ++ A
Sbjct: 61 IFVGFGFLMTFLKKYGFSSVGINLLVAALGLQWGTIVQGIL-QSQGQKFNIGIKNMINAD 119
Query: 118 MSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIF 161
SA +VLIS GAVLGK + Q+++M ++E+ ++S IF
Sbjct: 120 FSAATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSEIF 163
Score = 55.1 bits (131), Expect = 6e-08
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 164 YVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVM 223
++ +A LAGGVAVGT + P+ +M++G +AG++S+ G K L L IH +
Sbjct: 271 HIQNATLAGGVAVGTCADMAIHPFGSMIIGSIAGMVSVLGYKFLTPLFTTKLRIHDTCGV 330
Query: 224 HSIFSLLGLLGEITYIVLLVL 244
H++ L G++G + IV + +
Sbjct: 331 HNLHGLPGVVGGLAGIVAVAM 351
>gi|7706683 Rh family, C glycoprotein [Homo sapiens]
Length = 479
Score = 85.9 bits (211), Expect = 3e-17
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 8 SVRRCLPLCALTLEAALILLFYFFTHYD-------------ASLEDQKG-LVASYQVGQD 53
++R LPL L L+ +++LF F YD +L D + Y QD
Sbjct: 6 NLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQD 65
Query: 54 LTVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSI 113
+ VM +G GFL + +R+ +S+V FN + A G+QWA+L+ G+ +V+ + ++
Sbjct: 66 VHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENL 125
Query: 114 RLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNI 160
A SV ++ GAVLGKV+ QL++M +VT ++ N+
Sbjct: 126 INADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNL 172
Score = 45.1 bits (105), Expect = 7e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 164 YVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVM 223
++ +A LAGGVAVGT+ ++ P+ A+++G V G+IS G L L I +
Sbjct: 281 HIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGI 340
Query: 224 HSIFSLLGLLGEI 236
+++ + G++G I
Sbjct: 341 NNLHGIPGIIGGI 353
>gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]
Length = 458
Score = 84.3 bits (207), Expect = 1e-16
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 13 LPLCALTLEAALILLFYFFTHY----DASLEDQKG-------LVASYQVGQDLTVMAALG 61
LPL L L+ A +LF F Y DA+L + Y QD+ M +G
Sbjct: 15 LPLLCLFLQGATAVLFAVFVRYNHKTDAALWHRSNHSNADNEFYFRYPSFQDVHAMVFVG 74
Query: 62 LGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAM 121
GFL +R+ +SSV F + A +QW+ L+ GFL F G + + + S+ A A
Sbjct: 75 FGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAG 134
Query: 122 SVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNI 160
+VLIS GAVLGK QL++M L+EV G V+ ++
Sbjct: 135 AVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHL 173
Score = 45.4 bits (106), Expect = 5e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 164 YVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVM 223
++ +A LAGGV VGTS ++ +P+ A+ G +AG +S G K + +
Sbjct: 282 HIQNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESKFKVQDTCGV 341
Query: 224 HSIFSLLGLLGEITYIVLLVLHT 246
H++ + G+LG + +++ L T
Sbjct: 342 HNLHGMPGVLGALLGVLVAGLAT 364
>gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Homo
sapiens]
Length = 172
Score = 31.2 bits (69), Expect = 0.99
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 4 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55
Query: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
S+ R SW S L +LA VQ
Sbjct: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 31.2 bits (69), Expect = 0.99
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 83 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 134
Query: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
S+ R SW S L +LA VQ
Sbjct: 135 SSRTRSELPHLVSWHSWVGALTLLATAVQ 163
>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 31.2 bits (69), Expect = 0.99
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 61 LAFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 112
Query: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
S+ R SW S L +LA VQ
Sbjct: 113 SSRTRSELPHLVSWHSWVGALTLLATAVQ 141
>gi|76563908 hypothetical protein LOC169436 [Homo sapiens]
Length = 680
Score = 29.3 bits (64), Expect = 3.8
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 86 LGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAG-------AVLGKV---N 135
LG+ WA+LLDG + P + V L S LAT A + A ++LG +
Sbjct: 482 LGLLWALLLDGIIVNKAPLEKVPDLISQVLATYPADGEMAEASCGVFWLLSLLGCIKEQQ 541
Query: 136 LAQLVVMVLVEVTALGTLRMVISNIF 161
Q+V ++L + ++++N +
Sbjct: 542 FEQVVALLLQSIRLCQDRALLVNNAY 567
>gi|24497490 solute carrier family 22 member 4 [Homo sapiens]
Length = 551
Score = 29.3 bits (64), Expect = 3.8
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 89 QWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVT 148
Q A +LD F ++ +++L L ++ ++ + A + G L + L+E+
Sbjct: 325 QKAFILDLFRTRNIAIMTIMSLLLWMLTSVGYFALSLDAPNLHGDAYL-NCFLSALIEIP 383
Query: 149 ALGTLRMVISNIFNTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 195
A T +++ + Y+ +AVL G V L+P + + +GLV
Sbjct: 384 AYITAWLLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVDYYFLSIGLV 430
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 28.9 bits (63), Expect = 4.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 92 ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
ILL G LSQ PPG+V L I L T + +S +++AG G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 28.9 bits (63), Expect = 4.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 92 ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
ILL G LSQ PPG+V L I L T + +S +++AG G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717
>gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo
sapiens]
Length = 311
Score = 28.1 bits (61), Expect = 8.4
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 18 LTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAALGLGFLTSNFRRHSWSSV 77
L + A+I +F F A + VA Y V + V+ L L RR W+ +
Sbjct: 110 LLITVAIIAIFTFVEPVSAFVRRN---VAVYYVSYAVFVVTYLILACCQGPRRRFPWNII 166
Query: 78 AFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSV 123
LF A+G + G +S K VI I ++++
Sbjct: 167 LLTLFTFAMG-----FMTGTISSMYQTKAVIIAMIITAVVSISVTI 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,782,005
Number of Sequences: 37866
Number of extensions: 333957
Number of successful extensions: 1000
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 26
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.