Search of human proteins with 66346666

Search of human proteins with 66346666

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo
sapiens]
         (266 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo sa...   521   e-148
gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo sa...   382   e-106
gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo sa...   314   6e-86
gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo sa...   314   6e-86
gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]        297   7e-81
gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]         297   7e-81
gi|156627565 Rh-associated glycoprotein [Homo sapiens]                 89   4e-18
gi|7706683 Rh family, C glycoprotein [Homo sapiens]                    87   1e-17
gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]         86   3e-17
gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo...    33   0.26 
gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Hom...    31   0.98 
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom...    31   0.98 
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo...    31   0.98 
gi|238859647 G protein-coupled receptor 128 [Homo sapiens]             30   1.7  
gi|51702206 solute carrier family 41 member 1 [Homo sapiens]           30   1.7  
gi|76563908 hypothetical protein LOC169436 [Homo sapiens]              29   3.7  
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]         29   4.9  
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]          29   4.9  

>gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo
           sapiens]
          Length = 266

 Score =  521 bits (1341), Expect = e-148
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180

Query: 181 FSLLGLLGEITYIVLLVLHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLK 240
           FSLLGLLGEITYIVLLVLHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLK
Sbjct: 181 FSLLGLLGEITYIVLLVLHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLK 240

Query: 241 IWKAPHVAKYFDDQVFWKFPHLAVGF 266
           IWKAPHVAKYFDDQVFWKFPHLAVGF
Sbjct: 241 IWKAPHVAKYFDDQVFWKFPHLAVGF 266


>gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo
           sapiens]
          Length = 267

 Score =  382 bits (982), Expect = e-106
 Identities = 207/253 (81%), Positives = 207/253 (81%), Gaps = 46/253 (18%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN------------------ 162
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN                  
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVHSAVLAGGVAVGTSC 180

Query: 163 ----------------------------VCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 194
                                       VCCNRVLGIHHISVMHSIFSLLGLLGEITYIV
Sbjct: 181 HLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 240

Query: 195 LLVLHTVWNGNGM 207
           LLVLHTVWNGNGM
Sbjct: 241 LLVLHTVWNGNGM 253


>gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo
           sapiens]
          Length = 354

 Score =  314 bits (804), Expect = 6e-86
 Identities = 166/183 (90%), Positives = 170/183 (92%), Gaps = 2/183 (1%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN   +  + + H  V  + 
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT--DYHMNLRHFYVFAAY 178

Query: 181 FSL 183
           F L
Sbjct: 179 FGL 181


>gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo
           sapiens]
          Length = 417

 Score =  314 bits (804), Expect = 6e-86
 Identities = 166/183 (90%), Positives = 170/183 (92%), Gaps = 2/183 (1%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN   +  + + H  V  + 
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT--DYHMNLRHFYVFAAY 178

Query: 181 FSL 183
           F L
Sbjct: 179 FGL 181



 Score =  214 bits (545), Expect = 6e-56
 Identities = 119/189 (62%), Positives = 133/189 (70%), Gaps = 11/189 (5%)

Query: 79  FNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLG-KVNLA 137
           FN +  AL V     + G     P  K+ +T            S +++ G  +G   +L 
Sbjct: 239 FNTYY-ALAVSVVTAISGSSLAHPQRKISMTYVH---------SAVLAGGVAVGTSCHLI 288

Query: 138 QLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLV 197
               + +V     G + +  +    VCCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLV
Sbjct: 289 PSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLV 348

Query: 198 LHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFW 257
           LHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFW
Sbjct: 349 LHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFW 408

Query: 258 KFPHLAVGF 266
           KFPHLAVGF
Sbjct: 409 KFPHLAVGF 417


>gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]
          Length = 321

 Score =  297 bits (760), Expect = 7e-81
 Identities = 159/183 (86%), Positives = 166/183 (90%), Gaps = 2/183 (1%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1   MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180
           +SVLIS  AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFN   +  + + HI V  + 
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNT--DYHMNMMHIYVFAAY 178

Query: 181 FSL 183
           F L
Sbjct: 179 FGL 181


>gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]
          Length = 417

 Score =  297 bits (760), Expect = 7e-81
 Identities = 159/183 (86%), Positives = 166/183 (90%), Gaps = 2/183 (1%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1   MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180
           +SVLIS  AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFN   +  + + HI V  + 
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNT--DYHMNMMHIYVFAAY 178

Query: 181 FSL 183
           F L
Sbjct: 179 FGL 181



 Score =  181 bits (458), Expect = 8e-46
 Identities = 107/192 (55%), Positives = 123/192 (64%), Gaps = 11/192 (5%)

Query: 76  SVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLG-KV 134
           +  FN +  A+ V     + G     P GK+  T            S +++ G  +G   
Sbjct: 236 NAVFNTYY-AVAVSVVTAISGSSLAHPQGKISKTYVH---------SAVLAGGVAVGTSC 285

Query: 135 NLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSIFSLLGLLGEITYIV 194
           +L     + +V     G + +  +     CCNRVLGI H S+M   FSLLGLLGEI YIV
Sbjct: 286 HLIPSPWLAMVLGLVAGLISVGGAKYLPGCCNRVLGIPHSSIMGYNFSLLGLLGEIIYIV 345

Query: 195 LLVLHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQ 254
           LLVL TV  GNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPH AKYFDDQ
Sbjct: 346 LLVLDTVGAGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHEAKYFDDQ 405

Query: 255 VFWKFPHLAVGF 266
           VFWKFPHLAVGF
Sbjct: 406 VFWKFPHLAVGF 417


>gi|156627565 Rh-associated glycoprotein [Homo sapiens]
          Length = 409

 Score = 89.0 bits (219), Expect = 4e-18
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 9   VRRCLPLCALTLEAALILLFYFFTHY--DASLEDQKGLVASYQVG---------QDLTVM 57
           +R   PL A+ LE A+I+LF  F  Y  D ++ +Q  +     +G         QD+ VM
Sbjct: 1   MRFTFPLMAIVLEIAMIVLFGLFVEYETDQTVLEQLNITKPTDMGIFFELYPLFQDVHVM 60

Query: 58  AALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLAT 117
             +G GFL +  +++ +SSV  NL + ALG+QW  ++ G L Q    K  I + ++  A 
Sbjct: 61  IFVGFGFLMTFLKKYGFSSVGINLLVAALGLQWGTIVQGIL-QSQGQKFNIGIKNMINAD 119

Query: 118 MSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIF 161
            SA +VLIS GAVLGK +  Q+++M ++E+        ++S IF
Sbjct: 120 FSAATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSEIF 163



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 106 VVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLR---------MV 156
           +V T FS+    ++A +   S     GK+N+  +    L    A+GT           M+
Sbjct: 240 IVNTYFSLAACVLTAFA-FSSLVEHRGKLNMVHIQNATLAGGVAVGTCADMAIHPFGSMI 298

Query: 157 ISNIFNVCCNRVLG-------------IHHISVMHSIFSLLGLLGEITYIVLLVLHTVWN 203
           I +I  +    VLG             IH    +H++  L G++G +  IV + +     
Sbjct: 299 IGSIAGMVS--VLGYKFLTPLFTTKLRIHDTCGVHNLHGLPGVVGGLAGIVAVAM----- 351

Query: 204 GNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFWKFP 260
             G     + +    L  +I  A+  GL+TGL+L L +W  P     +DD V+WK P
Sbjct: 352 --GASNTSMAMQAAALGSSIGTAVVGGLMTGLILKLPLWGQPSDQNCYDDSVYWKVP 406


>gi|7706683 Rh family, C glycoprotein [Homo sapiens]
          Length = 479

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 8   SVRRCLPLCALTLEAALILLFYFFTHYD-------------ASLEDQKG-LVASYQVGQD 53
           ++R  LPL  L L+  +++LF  F  YD              +L D +      Y   QD
Sbjct: 6   NLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQD 65

Query: 54  LTVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSI 113
           + VM  +G GFL +  +R+ +S+V FN  + A G+QWA+L+ G+        +V+ + ++
Sbjct: 66  VHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENL 125

Query: 114 RLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNV 163
             A     SV ++ GAVLGKV+  QL++M   +VT       ++ N+  V
Sbjct: 126 INADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKV 175



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 202 WNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFWKFP 260
           +NG+     Q    I  L + + +AL  G++ GL+L L  W  P     F+D V+W+ P
Sbjct: 381 FNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMP 439


>gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]
          Length = 458

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 13  LPLCALTLEAALILLFYFFTHY----DASLEDQKG-------LVASYQVGQDLTVMAALG 61
           LPL  L L+ A  +LF  F  Y    DA+L  +             Y   QD+  M  +G
Sbjct: 15  LPLLCLFLQGATAVLFAVFVRYNHKTDAALWHRSNHSNADNEFYFRYPSFQDVHAMVFVG 74

Query: 62  LGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAM 121
            GFL    +R+ +SSV F   + A  +QW+ L+ GFL  F  G + + + S+  A   A 
Sbjct: 75  FGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAG 134

Query: 122 SVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNV 163
           +VLIS GAVLGK    QL++M L+EV   G    V+ ++  V
Sbjct: 135 AVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGV 176



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 17/163 (10%)

Query: 114 RLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTAL-GTLRMVISNIFNVCCNRVLGIH 172
           RL  +   +  ++ G V+G  +   L     +    L GT+  +    F         + 
Sbjct: 277 RLDMVHIQNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESKFKVQ 336

Query: 173 HISVMHSIFSLLGLLGEITYIVL--LVLHTVWNGNGMIGFQVLLSIGELS---------- 220
               +H++  + G+LG +  +++  L  H  + G+G+     L++ G+ S          
Sbjct: 337 DTCGVHNLHGMPGVLGALLGVLVAGLATHEAY-GDGLESVFPLIAEGQRSATSQAMHQLF 395

Query: 221 ---LAIVIALTSGLLTGLLLNLKIWKAPHVAKYFDDQVFWKFP 260
              + ++ A   G L GLLL L    +P  +++++DQV W+ P
Sbjct: 396 GLFVTLMFASVGGGLGGLLLKLPFLDSPPDSQHYEDQVHWQVP 438


>gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo
           sapiens]
          Length = 311

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 18  LTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAALGLGFLTSNFRRHSWSSV 77
           L +  A+I +F F     A +      VA Y V   + V+  L L       RR  W+ +
Sbjct: 110 LLITVAIIAIFTFVEPVSAFVRRN---VAVYYVSYAVFVVTYLILACCQGPRRRFPWNII 166

Query: 78  AFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLA 137
              LF  A+G      + G +S     K VI    I +   + +S+ ++      KV+  
Sbjct: 167 LLTLFTFAMG-----FMTGTISSMYQTKAVI----IAMIITAVVSISVTIFCFQTKVDFT 217

Query: 138 QLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSIFSLLGLL 187
               +  V    LG + +V   + ++    VL   ++  +H +++ LG +
Sbjct: 218 SCTGLFCV----LGIVLLVTGIVTSI----VLYFQYVYWLHMLYAALGAI 259


>gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Homo
          sapiens]
          Length = 172

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
          L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 4  LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55

Query: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
          S+  R       SW S    L +LA  VQ
Sbjct: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84


>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 251

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13  LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
           L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 83  LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 134

Query: 67  SNFRRH------SWSSVAFNLFMLALGVQ 89
           S+  R       SW S    L +LA  VQ
Sbjct: 135 SSRTRSELPHLVSWHSWVGALTLLATAVQ 163


>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 229

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13  LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
           L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 61  LAFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 112

Query: 67  SNFRRH------SWSSVAFNLFMLALGVQ 89
           S+  R       SW S    L +LA  VQ
Sbjct: 113 SSRTRSELPHLVSWHSWVGALTLLATAVQ 141


>gi|238859647 G protein-coupled receptor 128 [Homo sapiens]
          Length = 797

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 220 SLAIVIALTSGLLTGLLLNLKIWK 243
           +L +++A+  GLLTG++L L IW+
Sbjct: 8   NLRVLVAVVCGLLTGIILGLGIWR 31


>gi|51702206 solute carrier family 41 member 1 [Homo sapiens]
          Length = 513

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 140 VVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHI-----SVMHSIFSLLGLLGEITYIV 194
           + ++ V+ T +G L  + + +F    +    I H      S + + F    +LG I   V
Sbjct: 180 MALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLLCASSVATAFIASLVLGMIMIGV 239

Query: 195 LLVLHTVWNGNGMIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWK--APHVAKYF 251
           ++    +      +   +  S+G+L   I +AL SG+  GL L L  W+   P V  +F
Sbjct: 240 IIGSRKIGINPDNVATPIAASLGDL---ITLALLSGISWGLYLELNHWRYIYPLVCAFF 295


>gi|76563908 hypothetical protein LOC169436 [Homo sapiens]
          Length = 680

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 86  LGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAG-------AVLGKV---N 135
           LG+ WA+LLDG +    P + V  L S  LAT  A   +  A        ++LG +    
Sbjct: 482 LGLLWALLLDGIIVNKAPLEKVPDLISQVLATYPADGEMAEASCGVFWLLSLLGCIKEQQ 541

Query: 136 LAQLVVMVLVEVTALGTLRMVISNIF 161
             Q+V ++L  +       ++++N +
Sbjct: 542 FEQVVALLLQSIRLCQDRALLVNNAY 567


>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
          Length = 973

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 92  ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
           ILL G LSQ PPG+V   L  I       L T + +S +++AG   G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717


>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
          Length = 1070

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 92  ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
           ILL G LSQ PPG+V   L  I       L T + +S +++AG   G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,319,955
Number of Sequences: 37866
Number of extensions: 295351
Number of successful extensions: 862
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 25
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.