Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: P4HA2 Sequence: fasta or formatted (533aa) NCBI GI: 63252891
Description:

prolyl 4-hydroxylase, alpha II subunit isoform 2 precursor

Referenced in:

Collagen

Other entries for this name:
alt mRNA [533aa] prolyl 4-hydroxylase, alpha II subunit isoform 2 precursor
alt prot [535aa] prolyl 4-hydroxylase, alpha II subunit isoform 1 precursor
alt prot [535aa] prolyl 4-hydroxylase, alpha II subunit isoform 1 precursor
alt mRNA [533aa] prolyl 4-hydroxylase, alpha II subunit isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         45           2
 C cysteine            1.3          7           1
 D aspartate           6.0         32           3
 E glutamate           8.8         47           3
 F phenylalanine       3.6         19           2
 G glycine             6.6         35           2
 H histidine           2.3         12           2
 I isoleucine          2.8         15           1
 K lysine              5.4         29           2
 L leucine            11.1         59           2
 M methionine          2.1         11           1
 N asparagine          2.6         14           1
 P proline             4.1         22           1
 Q glutamine           3.6         19           1
 R arginine            6.8         36           2
 S serine              5.6         30           2
 T threonine           5.6         30           3
 V valine              6.8         36           2
 W tryptophan          2.1         11           1
 Y tyrosine            4.5         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre... 
P4HA2                 1.000   prolyl 4-hydroxylase, alpha II subunit isoform 2 pr...
P4HA2                 1.000   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA2                 0.974   prolyl 4-hydroxylase, alpha II subunit isoform 1 pr...
P4HA2                 0.974   prolyl 4-hydroxylase, alpha II subunit isoform 1 prec...
P4HA1                 0.629   prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...
P4HA1                 0.620   prolyl 4-hydroxylase, alpha I subunit isoform 2 pre...
P4HA1                 0.620   prolyl 4-hydroxylase, alpha I subunit isoform 2 prec...
P4HA1                 0.584   prolyl 4-hydroxylase, alpha I subunit isoform 3 pre...
P4HA3                 0.285   prolyl 4-hydroxylase, alpha III subunit precursor [H...
P4HTM                 0.043   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
P4HTM                 0.026   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
LEPREL1               0.010   leprecan-like 1 isoform b 
LEPREL1               0.010   leprecan-like 1 isoform a 
SC65                  0.009   synaptonemal complex protein SC65 
FREM3                 0.008   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.008   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.008   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
DNAJC3                0.007   DnaJ (Hsp40) homolog, subfamily C, member 3 
ANKRD11               0.005   ankyrin repeat domain 11 
SBF2                  0.005   SET binding factor 2 
NELL2                 0.005   NEL-like protein 2 isoform d 
NELL2                 0.005   NEL-like protein 2 isoform c 
NELL2                 0.005   NEL-like protein 2 isoform b precursor 
NELL2                 0.005   NEL-like protein 2 isoform a 
NELL2                 0.005   NEL-like protein 2 isoform b precursor 
SACS                  0.005   sacsin 
AZI1                  0.005   5-azacytidine induced 1 isoform b 
AZI1                  0.005   5-azacytidine induced 1 isoform a 
TIMP1                 0.004   tissue inhibitor of metalloproteinase 1 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press