Guide to the Human Genome
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Name: P4HA1 Sequence: fasta or formatted (534aa) NCBI GI: 217272849
Description:

prolyl 4-hydroxylase, alpha I subunit isoform 2 precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [516aa] prolyl 4-hydroxylase, alpha I subunit isoform 3 precursor
alt prot [534aa] prolyl 4-hydroxylase, alpha I subunit isoform 1 precursor
alt mRNA [534aa] prolyl 4-hydroxylase, alpha I subunit isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         36           2
 C cysteine            0.9          5           1
 D aspartate           7.5         40           2
 E glutamate           7.7         41           2
 F phenylalanine       3.7         20           2
 G glycine             6.2         33           2
 H histidine           2.2         12           1
 I isoleucine          5.4         29           2
 K lysine              8.2         44           3
 L leucine            10.1         54           3
 M methionine          1.9         10           1
 N asparagine          3.7         20           1
 P proline             4.1         22           1
 Q glutamine           3.9         21           2
 R arginine            4.9         26           2
 S serine              5.4         29           1
 T threonine           5.8         31           2
 V valine              5.2         28           2
 W tryptophan          2.1         11           1
 Y tyrosine            4.1         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prolyl 4-hydroxylase, alpha I subunit isoform 2 pre... 
P4HA1                 1.000   prolyl 4-hydroxylase, alpha I subunit isoform 2 prec...
P4HA1                 0.982   prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...
P4HA1                 0.934   prolyl 4-hydroxylase, alpha I subunit isoform 3 pre...
P4HA2                 0.636   prolyl 4-hydroxylase, alpha II subunit isoform 1 pr...
P4HA2                 0.636   prolyl 4-hydroxylase, alpha II subunit isoform 1 prec...
P4HA2                 0.617   prolyl 4-hydroxylase, alpha II subunit isoform 2 pr...
P4HA2                 0.617   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA2                 0.617   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA3                 0.280   prolyl 4-hydroxylase, alpha III subunit precursor [H...
P4HTM                 0.047   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
P4HTM                 0.030   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
LUZP1                 0.013   leucine zipper protein 1 
LUZP1                 0.013   leucine zipper protein 1 
LEPREL1               0.008   leprecan-like 1 isoform b 
LEPREL1               0.008   leprecan-like 1 isoform a 
SDCCAG10              0.008   serologically defined colon cancer antigen 10 
NUCB2                 0.007   nucleobindin 2 
RFX1                  0.007   regulatory factor X1 
KRT33B                0.006   type I hair keratin 3B 
LEPRE1                0.006   leprecan 1 isoform 1 
LEPRE1                0.006   leprecan 1 isoform 2 
TRIP11                0.006   thyroid hormone receptor interactor 11 
DST                   0.005   dystonin isoform 4 
DST                   0.005   dystonin isoform 3 
DST                   0.005   dystonin isoform 2 
DST                   0.005   dystonin isoform 1 
DST                   0.005   dystonin isoform 1eA precursor 
EEA1                  0.005   early endosome antigen 1, 162kD 
DCTN2                 0.005   dynactin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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