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Search of human proteins with 13569885
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13569885 integral membrane protein 2C isoform 1 [Homo
sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens] 540 e-154
gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens] 445 e-125
gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens] 423 e-119
gi|11527402 integral membrane protein 2B [Homo sapiens] 223 1e-58
gi|4758224 integral membrane protein 2A [Homo sapiens] 175 4e-44
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 31 1.3
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 31 1.3
gi|5174449 H1 histone family, member X [Homo sapiens] 30 2.2
gi|163792194 N2,N2-dimethylguanosine tRNA methyltransferase-like... 30 2.9
gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b ... 29 3.8
gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 29 3.8
gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B... 29 3.8
gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B... 29 3.8
gi|4503833 frizzled 7 [Homo sapiens] 29 4.9
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 29 4.9
gi|207028935 microfibrillar-associated protein 2 isoform b precu... 29 4.9
gi|207028905 microfibrillar-associated protein 2 isoform b precu... 29 4.9
gi|4505157 microfibrillar-associated protein 2 isoform a precurs... 29 4.9
gi|9665259 microfibrillar-associated protein 2 isoform a precurs... 29 4.9
gi|149773468 RAD51 associated protein 2 [Homo sapiens] 29 4.9
gi|116875834 zinc finger protein 74 [Homo sapiens] 29 4.9
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 28 6.4
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 28 6.4
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 28 6.4
gi|225703077 dual specificity phosphatase 21 [Homo sapiens] 28 6.4
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 28 6.4
gi|151301175 hypothetical protein LOC58489 [Homo sapiens] 28 6.4
gi|156627559 tenomodulin [Homo sapiens] 28 8.4
gi|153070260 myristoylated alanine-rich protein kinase C substra... 28 8.4
>gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens]
Length = 267
Score = 540 bits (1391), Expect = e-154
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
Query: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
Query: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
>gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens]
Length = 230
Score = 445 bits (1144), Expect = e-125
Identities = 230/267 (86%), Positives = 230/267 (86%), Gaps = 37/267 (13%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
YLDENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQR------------------------------ 150
Query: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 151 -------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 203
Query: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 204 KRGAKNCNAIRHFENTFVVETLICGVV 230
>gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens]
Length = 220
Score = 423 bits (1088), Expect = e-119
Identities = 220/267 (82%), Positives = 220/267 (82%), Gaps = 47/267 (17%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR-------------------- 40
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 41 ---------------------------LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 73
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW
Sbjct: 74 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 133
Query: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 134 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 193
Query: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 194 KRGAKNCNAIRHFENTFVVETLICGVV 220
>gi|11527402 integral membrane protein 2B [Homo sapiens]
Length = 266
Score = 223 bits (569), Expect = 1e-58
Identities = 120/276 (43%), Positives = 166/276 (60%), Gaps = 23/276 (8%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRA 52
Query: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E S +
Sbjct: 53 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPSADAPA 109
Query: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 168
+EE++KI+ +E E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 110 ALYQTIEENIKIFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 169
Query: 169 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 228
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG FIY LC+ K+TY
Sbjct: 170 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETY 229
Query: 229 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 264
+L+RR T + I KR A NC AIRHFEN F VETLIC
Sbjct: 230 KLQRRETIKGIQKREASNCFAIRHFENKFAVETLIC 265
>gi|4758224 integral membrane protein 2A [Homo sapiens]
Length = 263
Score = 175 bits (443), Expect = 4e-44
Identities = 104/271 (38%), Positives = 151/271 (55%), Gaps = 17/271 (6%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKI+F A ++ ++A + + + T+IL +E + K G S G C
Sbjct: 1 MVKIAFNTPTA-VQKEEARQDVEALLSRTVRTQIL---TGKELRVATQEKEGSS--GRCM 54
Query: 61 LSM-GMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDS------LSSQVRTQME 113
L++ G+ +L GL+ IY+YF + + +R + + DS L +
Sbjct: 55 LTLLGLSFILAGLIVGGACIYKYF----MPKSTIYRGEMCFFDSEDPANSLRGGEPNFLP 110
Query: 114 LEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIV 173
+ E+ I D+N I+VPVP F DPA IIHDF++G+TAY D+ L CY++ LNT+IV
Sbjct: 111 VTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIV 170
Query: 174 LPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRR 233
+PP+N EL + G YLPQTY+++E++V E + D LG FIY LCN + ++RLRRR
Sbjct: 171 MPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRR 230
Query: 234 ATRRRINKRGAKNCNAIRHFENTFVVETLIC 264
NKR C IRHF N F+VET IC
Sbjct: 231 DLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 30.8 bits (68), Expect = 1.3
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
L +G VVL+ G V F+ + + + + V Y S++ +++ + ++I
Sbjct: 40 LKVGAVVLISGAVLLLFGAIGAFYFWKGSDSHIYN--VHYTMSINGKLQ-----DGSMEI 92
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNF 179
N E + G + A ++DFQ G+T +KCY+ ++ I
Sbjct: 93 DAGNNLETFKMG----SGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
Query: 180 WELLMNVKRGTYLPQTYIIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTY 228
+ + + G +P Y EE + V + V D L S + LC K TY
Sbjct: 149 KQSISSKLEGKIMPVKY---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTY 205
Query: 229 RLRRRATRRRINKR 242
+ RR + ++
Sbjct: 206 PKEIQRERREVVRK 219
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 1.3
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
L +G VVL+ G V F+ + + + + V Y S++ +++ + ++I
Sbjct: 40 LKVGAVVLISGAVLLLFGAIGAFYFWKGSDSHIYN--VHYTMSINGKLQ-----DGSMEI 92
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNF 179
N E + G + A ++DFQ G+T +KCY+ ++ I
Sbjct: 93 DAGNNLETFKMG----SGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
Query: 180 WELLMNVKRGTYLPQTYIIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTY 228
+ + + G +P Y EE + V + V D L S + LC K TY
Sbjct: 149 KQSISSKLEGKIMPVKY---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTY 205
Query: 229 RLRRRATRRRINKR 242
+ RR + ++
Sbjct: 206 PKEIQRERREVVRK 219
>gi|5174449 H1 histone family, member X [Homo sapiens]
Length = 213
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRG 52
PA A A KA +AP A + PAR ++P Q K+G
Sbjct: 131 PAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKG 175
>gi|163792194 N2,N2-dimethylguanosine tRNA methyltransferase-like
[Homo sapiens]
Length = 733
Score = 29.6 bits (65), Expect = 2.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 ASASAPAPASATEILLTPAREEQPPQHRSKRGGSV 55
ASA APAPA A L+P+ P + +SKR S+
Sbjct: 50 ASAPAPAPALAQAPALSPSLASAPEEAKSKRHISI 84
>gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b
[Homo sapiens]
Length = 1075
Score = 29.3 bits (64), Expect = 3.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
G D +A P+S +I LT R E P + R GS G + Y
Sbjct: 856 GPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINY 901
>gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a
[Homo sapiens]
Length = 1099
Score = 29.3 bits (64), Expect = 3.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
G D +A P+S +I LT R E P + R GS G + Y
Sbjct: 880 GPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINY 925
>gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B,
member 5 isoform 3 [Homo sapiens]
Length = 491
Score = 29.3 bits (64), Expect = 3.8
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 10 VAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGMVVLL 69
V+G GD + + S P PA + LTP + PQ S G +G V +S+ V+LL
Sbjct: 317 VSGPSGDPSLSPTGSTPTPAGPEDQPLTPTGLD--PQ--SGLGRHLGVVTGVSVAFVLLL 372
Query: 70 MGLVF 74
L+F
Sbjct: 373 FLLLF 377
>gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B,
member 5 isoform 1 [Homo sapiens]
Length = 591
Score = 29.3 bits (64), Expect = 3.8
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 10 VAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGMVVLL 69
V+G GD + + S P PA + LTP + PQ S G +G V +S+ V+LL
Sbjct: 417 VSGPSGDPSLSPTGSTPTPAGPEDQPLTPTGLD--PQ--SGLGRHLGVVTGVSVAFVLLL 472
Query: 70 MGLVF 74
L+F
Sbjct: 473 FLLLF 477
>gi|4503833 frizzled 7 [Homo sapiens]
Length = 574
Score = 28.9 bits (63), Expect = 4.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 52 GGSVGGVCYLSMGMVVLLMGLVFASVYIYRY 82
G + GVCY+ + V L G V A +++Y +
Sbjct: 404 GDLLSGVCYVGLSSVDALRGFVLAPLFVYLF 434
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 28.9 bits (63), Expect = 4.9
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPAS-ATEILLTPAREEQPPQHRSKRG 52
P + G G K D S P PA AT+ L P PP R G
Sbjct: 457 PGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSG 502
>gi|207028935 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 28.9 bits (63), Expect = 4.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 76 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 134
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 135 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 171
>gi|207028905 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 28.9 bits (63), Expect = 4.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 76 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 134
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 135 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 171
>gi|4505157 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 4.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 77 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 135
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 136 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 172
>gi|9665259 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 4.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 77 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 135
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 136 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 172
>gi|149773468 RAD51 associated protein 2 [Homo sapiens]
Length = 1159
Score = 28.9 bits (63), Expect = 4.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 143 DIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEM 202
D+ + Q+ + A H+I ++ E +TT + NFW LL ++ Y I++EE+
Sbjct: 785 DLCNVRQQAIPASHNIIHNE----ETHTTSITQVLNFWNLLSEIEEKKY---DLILKEEV 837
Query: 203 VVT 205
VT
Sbjct: 838 KVT 840
>gi|116875834 zinc finger protein 74 [Homo sapiens]
Length = 644
Score = 28.9 bits (63), Expect = 4.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 14 KGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
K +A + APA A E TP+ E+ PQ R +RG G
Sbjct: 202 KNVQATEGRTKAPARLCAGENASTPSEPEKFPQVRRQRGAGAG 244
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|225703077 dual specificity phosphatase 21 [Homo sapiens]
Length = 190
Score = 28.5 bits (62), Expect = 6.4
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 83 FFLAQLARDNFFRCGVLYEDSL---SSQVRTQMELEEDVKIYLDENYERINVPVPQ---- 135
+ +Q+ R F GV D L S+++ + +V E + I VPV
Sbjct: 20 YSFSQITRSLFLSNGVAANDKLLLSSNRITAIVNASVEVVNVFFEGIQYIKVPVTDARDS 79
Query: 136 --FGGGDP-ADIIH--DFQRGLTAYH-------DISLDKCYVIELNTT------------ 171
+ DP AD+IH D ++G T H SL Y+++ ++
Sbjct: 80 RLYDFFDPIADLIHTIDMRQGRTLLHCMAGVSRSASLCLAYLMKYHSMSLLDAHTWTKSR 139
Query: 172 --IVLPPRNFWELLMN 185
I+ P FWE L+N
Sbjct: 140 RPIIRPNNGFWEQLIN 155
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGM 65
G+ A A A+AP PA A+ I + PA P Q + GG + + G+
Sbjct: 733 GNSAAPAPATAPTPAPASTIKIVPAHVPTPIQ------PTFGGATHSAFGL 777
>gi|151301175 hypothetical protein LOC58489 [Homo sapiens]
Length = 329
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 21 ASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSM 63
A ASAPAPA AT A + PQ + G+ G C L +
Sbjct: 52 AGASAPAPAQAT---AAAAAAQPAPQQPEEGAGAGPGACSLHL 91
>gi|156627559 tenomodulin [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 138 GGDPADIIHDFQRGLTAYHDISLDKCYV 165
G D +HDF+ G T + + L KC++
Sbjct: 95 GTDETLEVHDFKNGYTGIYFVGLQKCFI 122
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 28.1 bits (61), Expect = 8.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 7 QPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGS 54
+PA AG A PA A+A E +P +E P + + GS
Sbjct: 71 EPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGS 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,169,768
Number of Sequences: 37866
Number of extensions: 456335
Number of successful extensions: 1720
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 34
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.