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Search of human proteins with 13435397
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13435397 PHD finger protein 1 isoform b [Homo sapiens]
(567 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13435397 PHD finger protein 1 isoform b [Homo sapiens] 1194 0.0
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 754 0.0
gi|6678764 metal response element binding transcription factor 2... 406 e-113
gi|58331161 PHD finger protein 19 isoform a [Homo sapiens] 402 e-112
gi|58331163 PHD finger protein 19 isoform b [Homo sapiens] 133 5e-31
gi|117190334 PHD finger protein 16 [Homo sapiens] 54 3e-07
gi|7662006 PHD finger protein 16 [Homo sapiens] 54 3e-07
gi|40556370 PHD finger protein 15 [Homo sapiens] 52 1e-06
gi|215599585 integrator complex subunit 12 [Homo sapiens] 52 2e-06
gi|21361851 integrator complex subunit 12 [Homo sapiens] 52 2e-06
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 51 2e-06
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 51 2e-06
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 50 6e-06
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 50 7e-06
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 50 7e-06
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 50 7e-06
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 50 7e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 49 9e-06
gi|24308203 CSRP2 binding protein isoform a [Homo sapiens] 48 3e-05
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 47 4e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 47 5e-05
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 47 5e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 6e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 2e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 45 2e-04
>gi|13435397 PHD finger protein 1 isoform b [Homo sapiens]
Length = 567
Score = 1194 bits (3090), Expect = 0.0
Identities = 567/567 (100%), Positives = 567/567 (100%)
Query: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
Sbjct: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
Query: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
Sbjct: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
Query: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
Sbjct: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
Query: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
Sbjct: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
Query: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
Sbjct: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
Query: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTSFPSGQGPGGG 360
RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTSFPSGQGPGGG
Sbjct: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTSFPSGQGPGGG 360
Query: 361 VSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPS 420
VSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPS
Sbjct: 361 VSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPS 420
Query: 421 PSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIG 480
PSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIG
Sbjct: 421 PSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIG 480
Query: 481 FPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGD 540
FPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGD
Sbjct: 481 FPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGD 540
Query: 541 PVRVLARRVRPDGSVQYLVEWGGGGIF 567
PVRVLARRVRPDGSVQYLVEWGGGGIF
Sbjct: 541 PVRVLARRVRPDGSVQYLVEWGGGGIF 567
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 754 bits (1946), Expect = 0.0
Identities = 357/375 (95%), Positives = 359/375 (95%), Gaps = 1/375 (0%)
Query: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
Sbjct: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
Query: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
Sbjct: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
Query: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
Sbjct: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
Query: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
Sbjct: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
Query: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
Sbjct: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
Query: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALT-SFPSGQGPGG 359
RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALT + P G+G
Sbjct: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTS 360
Query: 360 GVSRPLGKRRRPEPE 374
P R PE E
Sbjct: 361 PGEAPEAGARAPEEE 375
>gi|6678764 metal response element binding transcription factor 2
[Homo sapiens]
Length = 593
Score = 406 bits (1043), Expect = e-113
Identities = 232/563 (41%), Positives = 306/563 (54%), Gaps = 41/563 (7%)
Query: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 42 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 101
Query: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 102 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 161
Query: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 162 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 221
Query: 207 CLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCC 266
C QWFHEAC QCL KP+L+GDRFY F C VC GPE ++RL L+WVD+AHL LY+LSV
Sbjct: 222 CKQWFHEACVQCLQKPMLFGDRFYTFICSVCSSGPEYLKRLPLQWVDIAHLCLYNLSVIH 281
Query: 267 KKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRK 326
KKKYFD + E++ + +ENWD L GEL+DTPK ER +L ALN +K F+SG+EIKK+K
Sbjct: 282 KKKYFDSELELMTYINENWDRLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKK 341
Query: 327 CLFGLHARMPPPVEPPTGDGALTSFPSGQGPGGGVSR-PLGKRRRPEPEPLRRRQKGKVE 385
LFGL R+PP PP +F + + P G + R+ +P R +E
Sbjct: 342 HLFGLRIRVPP--VPPN-----VAFKAEKEPEGTSHEFKIKGRKASKPISDSREVSNGIE 394
Query: 386 ELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPS 445
+ G +V P P R +Q+ + + S S N + A +
Sbjct: 395 KKGKKKSVGRPPGPY---TRKMIQKTAEPLLDKESISENPTLDLPCSIGRTEGTAHSSNT 451
Query: 446 SPIRMF-ASFHPSASTAGTSGDSGPPD-RSPLELHIGFPTDIP-------KSAPHSMTAS 496
S + AS +++ S G D R +P IP + ++
Sbjct: 452 SDVDFTGASSAKETTSSSISRHYGLSDSRKRTRTGRSWPAAIPHLRRRRGRLPRRALQTQ 511
Query: 497 SSSVSSPSPG----------------LPRRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGD 540
+S + G L + + L S++ G G ++ G+
Sbjct: 512 NSEIVKDDEGKEDYQFDELNTEILNNLADQELQLNHLKNSITSYFG-----AAGRIACGE 566
Query: 541 PVRVLARRVRPDGSVQYLVEWGG 563
RVLARRV DG VQYLVEW G
Sbjct: 567 KYRVLARRVTLDGKVQYLVEWEG 589
>gi|58331161 PHD finger protein 19 isoform a [Homo sapiens]
Length = 580
Score = 402 bits (1033), Expect = e-112
Identities = 234/559 (41%), Positives = 315/559 (56%), Gaps = 46/559 (8%)
Query: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGG 149
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A ++GG
Sbjct: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRKGG 158
Query: 150 ALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQ 209
ALKKG AR + +K+ L Y + L+WD+ H +N+QQ YCYCGGPGEW L+MLQC C Q
Sbjct: 159 ALKKGAIARTLQAVKMVLSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQ 218
Query: 210 WFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKK 269
WFHEACTQCL++P+++GDRFY F C VC GPE + RL LRWVDV HL LY+L V KKK
Sbjct: 219 WFHEACTQCLNEPMMFGDRFYLFFCSVCNQGPEYIERLPLRWVDVVHLALYNLGVQSKKK 278
Query: 270 YFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLF 329
YFDF+ EIL F + +W+ L LG+L+ TP +R LL+ALNS+K RF+ G+EIKK+KC+F
Sbjct: 279 YFDFE-EILAFVNHHWELLQLGKLTSTPVTDRGPHLLNALNSYKSRFLCGKEIKKKKCIF 337
Query: 330 GLHARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGP 389
L R+PP PP G L + L LR+R K K L
Sbjct: 338 RLRIRVPP--NPP---GKLLP-----------DKGLLPNENSASSELRKRGKSKPGLLPH 381
Query: 390 PSAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPS-SPI 448
+ + + +R + L+ A+ +S + S N + +S ++F + + L S S
Sbjct: 382 EFQQQKRRVYRRKRSKFLLEDAIPSSDFTSAWSTN--HHLASIFDFTLDEIQSLKSASSG 439
Query: 449 RMFASFHPSASTAGTSGDSGPPDRSPLELHIG------------------FPTDIPKSAP 490
+ F S S A TSG + +G + ++ P
Sbjct: 440 QTFFSDVDSTDAASTSGSASTSLSYDSRWTVGSRKRKLAAKAYMPLRAKRWAAELDGRCP 499
Query: 491 HSMTASSSSV-SSPSPGLPRR-----SAPPSPLCRSLSPGTGGGVRGGVGYLSRGDPVRV 544
+A +SV P G+ S S L S T G G L+ G+ +V
Sbjct: 500 SDSSAEGASVPERPDEGIDSHTFESISEDDSSLSHLKSSIT--NYFGAAGRLACGEKYQV 557
Query: 545 LARRVRPDGSVQYLVEWGG 563
LARRV P+G VQYLVEW G
Sbjct: 558 LARRVTPEGKVQYLVEWEG 576
>gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]
Length = 207
Score = 133 bits (334), Expect = 5e-31
Identities = 60/117 (51%), Positives = 80/117 (68%)
Query: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A +
Sbjct: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
>gi|117190334 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P EG SW+CR CV I
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKVP---EG---SWLCRSCVLGIY 252
Query: 144 -----ATKRGGALK 152
K+GGALK
Sbjct: 253 PQCVLCPKKGGALK 266
>gi|7662006 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P EG SW+CR CV I
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKVP---EG---SWLCRSCVLGIY 252
Query: 144 -----ATKRGGALK 152
K+GGALK
Sbjct: 253 PQCVLCPKKGGALK 266
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P SW+CR C +
Sbjct: 198 EDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPT------GSWLCRTCALGVQ 251
Query: 144 -----ATKRGGALK 152
KRGGALK
Sbjct: 252 PKCLLCPKRGGALK 265
Score = 39.7 bits (91), Expect = 0.007
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 336 PPPVEPPTGDGALTSFPSG--QGPGGGVS-RPLGKRRRPEPEPLRRRQKGKVEE--LGPP 390
PPP+ P T D A + Q PG S +PLG+ R P + RR G + +GPP
Sbjct: 673 PPPLAPETPDEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPDAGMGPP 732
Query: 391 SAVRNQPE 398
SAV +P+
Sbjct: 733 SAVAERPK 740
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 88 LLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPR-APAPGEGEGTSWVCRQC 139
L C VCR V GN+LV C++C + YH+DCH P+ W C +C
Sbjct: 160 LACVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 88 LLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPR-APAPGEGEGTSWVCRQC 139
L C VCR V GN+LV C++C + YH+DCH P+ W C +C
Sbjct: 160 LACVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 80 PAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQ 138
P AL E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR+
Sbjct: 266 PNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRR 319
Query: 139 CV--------FAIATKRGGALKK 153
C+ A+ +GGA K+
Sbjct: 320 CLQSPSRAVDCALCPNKGGAFKQ 342
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 80 PAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQ 138
P AL E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR+
Sbjct: 266 PNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRR 319
Query: 139 CV--------FAIATKRGGALKK 153
C+ A+ +GGA K+
Sbjct: 320 CLQSPSRAVDCALCPNKGGAFKQ 342
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 50.1 bits (118), Expect = 6e-06
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGG 149
C VC + +L+ C KCR++YH +C P P + W+C +CV K G
Sbjct: 1482 CHVCGRQHQAT-KQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1537
Query: 150 ALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYC----YCGGPGEWNLKMLQCR 205
+ G A SL + L + ++C C ++ KM+QC
Sbjct: 1538 STTPGKGWDAQWSHDFSLCHDCAKL--------FAKGNFCPLCDKCYDDDDYESKMMQCG 1589
Query: 206 SCLQWFHEAC 215
C +W H C
Sbjct: 1590 KCDRWVHSKC 1599
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 49.7 bits (117), Expect = 7e-06
Identities = 64/254 (25%), Positives = 91/254 (35%), Gaps = 49/254 (19%)
Query: 332 HARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRR-PEPEPLRRRQKGKVEELGPP 390
HA P P P+ ++S P G G + LG++ R P P + + + + +
Sbjct: 129 HASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYK 188
Query: 391 SAVRNQPEPQEQRERAHLQRALQA------------SVSPPSPS---------------- 422
R QP P HLQ A+Q ++ PPS S
Sbjct: 189 MLARGQPLPD------HLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGP 242
Query: 423 ----PNQSY-QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLEL 477
PN S G G N P +P P G ++ P +P +L
Sbjct: 243 GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL 302
Query: 478 HIGFPTDIPKSAPHSMTASSSSVSSP---SPGLPRRSAPPSPLCRSLSPGTGGGVRGGVG 534
PT P AP ++ ++S V P SPG P + AP PL + S T G+
Sbjct: 303 IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL- 361
Query: 535 YLSRGDPVRVLARR 548
DPV +L R
Sbjct: 362 -----DPVEILQER 370
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VC+S GN +V C+KC HQ C+ + + P EG SW+CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVP---EG---SWLCRTCALGVQ 255
Query: 144 -----ATKRGGALK 152
K+GGA+K
Sbjct: 256 PKCLLCPKKGGAMK 269
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VC+S GN +V C+KC HQ C+ + + P EG SW+CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVP---EG---SWLCRTCALGVQ 255
Query: 144 -----ATKRGGALK 152
K+GGA+K
Sbjct: 256 PKCLLCPKKGGAMK 269
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 49.3 bits (116), Expect = 9e-06
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 104 LVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGM 163
L+ CE+CRHAYH C P P + W+C CV K GA + +
Sbjct: 1265 LLECERCRHAYHPACLGPSYPTRATRKRRHWICSACV---RCKSCGATPGKNW-----DV 1316
Query: 164 KLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEAC 215
+ S Y L N C ++ KM+QC C W H C
Sbjct: 1317 EWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKC 1368
Score = 35.0 bits (79), Expect = 0.18
Identities = 47/191 (24%), Positives = 62/191 (32%), Gaps = 24/191 (12%)
Query: 336 PPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRN 395
PPP+ PP+ P P P P P P + Q+ + P + R
Sbjct: 414 PPPLPPPSTSPPPPLCPPPPPPVSPPPLP-----SPPPPPAQEEQEESPPPVVPATCSRK 468
Query: 396 QPEPQ---EQRERAHLQRALQASVSPPSPSPNQSYQG--SSGYNFRPTDARCLPSSPIRM 450
+ P QR RA SPP+P+P+ + G P L + IR
Sbjct: 469 RGRPPLTPSQRAEREAARAGPEGTSPPTPTPSTATGGPPEDSPTVAPKSTTFLKN--IRQ 526
Query: 451 FASFHPSA------STAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPS 504
F SA T D PP +E+ I S P +P
Sbjct: 527 FIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPP------VPQEPAPV 580
Query: 505 PGLPRRSAPPS 515
P PR PPS
Sbjct: 581 PSPPRAPTPPS 591
Score = 30.8 bits (68), Expect = 3.5
Identities = 59/251 (23%), Positives = 83/251 (33%), Gaps = 62/251 (24%)
Query: 337 PPVEPPTGDGALTSFPS---GQGPGGGVS-RPLGKRRRPE--------------PEPLRR 378
PP P + GA P+ + P GGVS PL P P P RR
Sbjct: 1853 PPPAPRSFSGARIKVPNYSPSRRPLGGVSFGPLPSPGSPSSLTHHIPTVGDPDFPAPPRR 1912
Query: 379 -RQKGKVEELGPPSAVRNQPEPQEQRERAHLQRAL-------QASVSPPSPSPNQSYQGS 430
R+ + PPS + P + R ++ ++PP P+P+
Sbjct: 1913 SRRPSPLAPRPPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAPSPPPPED 1972
Query: 431 SGYNFRPTD-------------ARCLPSSPIRM-FASFHPSASTAGTSGDSGPPDRSPLE 476
G +F + A L + P + + S+ G GDS + SP
Sbjct: 1973 LGPDFEDMEVVSGLSAADLDFAASLLGTEPFQEEIVAAGAMGSSHGGPGDSSEEESSPTS 2032
Query: 477 LHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPR--------------RSAPPSPLCRSLS 522
+I FP + SAP S +PG PR A P +
Sbjct: 2033 RYIHFPVTV-VSAP-------GLAPSATPGAPRIEQLDGVDDGTDSEAEAVQQPRGQGTP 2084
Query: 523 PGTGGGVRGGV 533
P G VR GV
Sbjct: 2085 PSGPGVVRAGV 2095
>gi|24308203 CSRP2 binding protein isoform a [Homo sapiens]
Length = 782
Score = 47.8 bits (112), Expect = 3e-05
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 204 CRSCLQWFHEACTQCLSKPLLY--GDRFYEFECCVCRG-GPEKVRRLQLRWVDVAHLVLY 260
C C +W + L + L Y GD F+ F C C G E+ RL+L W V L +Y
Sbjct: 77 CDKCQKWIPASQ---LREQLSYLKGDNFFRFTCSDCSADGKEQYERLKLTWQQVVMLAMY 133
Query: 261 HLSV--CCKKKYFDFDREILPFTSENWDSLL 289
+LS+ ++ YF + +I F ++W LL
Sbjct: 134 NLSLEGSGRQGYFRWKEDICAFIEKHWTFLL 164
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 47.4 bits (111), Expect = 4e-05
Identities = 55/207 (26%), Positives = 72/207 (34%), Gaps = 31/207 (14%)
Query: 336 PPPVEPPTGDGALTS-FPSG------QGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELG 388
PP ++PP L + PS P P G +P PE R K +EL
Sbjct: 540 PPSMQPPAPPAELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGPE---RTSTTKSKELS 596
Query: 389 PPSAVRNQPEPQEQRERAHLQRALQASVSP-PSPSPNQSYQGSSGYNFRPTDARCLPSSP 447
P SA + P + A Q Q P SPSP+Q S + R + P P
Sbjct: 597 PGSAQKGSPGSSQGTACAGTQPGAQPGAQPGASPSPSQPPADQSPHTLRKVSKKLAPIPP 656
Query: 448 IRMFASFHPSASTAGTSGDSGPPDRSP----------LELHIGF--------PTDIPKSA 489
F P A ++G P SP L G+ P P A
Sbjct: 657 KVPFGQ--PGAMADQSAGQPSPVSLSPTPPSTPSPYGLSYPQGYSLASGQLSPAAAPPLA 714
Query: 490 PHSMTASSSSVSSPSPGLPRRSAPPSP 516
S+ S+ S S P+P +R P P
Sbjct: 715 SPSVFTSTLSKSRPTPKPRQRPTLPPP 741
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 47.0 bits (110), Expect = 5e-05
Identities = 54/191 (28%), Positives = 65/191 (34%), Gaps = 56/191 (29%)
Query: 330 GLHARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGP 389
GL A PP V PP D A P P S P G + RP P P +
Sbjct: 276 GLQALRPPQVTPPRKDAAPALGPLSSSPLATPS-PSGTKARPVPPP---------DNAAT 325
Query: 390 PSAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIR 449
P P P A ++PPSPS P + LPS P
Sbjct: 326 PLPATLPPSP---------PLATPLPLAPPSPS-------------APPSLQTLPSPPAT 363
Query: 450 MFASFHPSASTAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPR 509
+ PS +T PP ++P L T P PHS+T+ P
Sbjct: 364 PPSQAPPSMTT--------PPMQAPPSLQ----TIPPIQVPHSLTS------------PS 399
Query: 510 RSAPPSPLCRS 520
APPSPL S
Sbjct: 400 LQAPPSPLALS 410
Score = 43.1 bits (100), Expect = 7e-04
Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 15/197 (7%)
Query: 340 EPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEP-LRRRQKGKVEELG-PPSAVRNQP 397
E G T P G R P P + RR + E+G P A +P
Sbjct: 139 EETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARP 198
Query: 398 EPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPS 457
P + R + A + S + PSP+ + + S+G + +R L SS + +
Sbjct: 199 RPPTEGPRKSVSSASEHSTTEPSPAARR--RPSAGGGLQRPASRSLSSSATPLSSPARSG 256
Query: 458 ASTAGT-SGDSGPPDRSPLELHIGFPTDI----PKSAPHSMTASSSSVSSPSP-GLPRRS 511
S GT + P P L P + +AP SSS +++PSP G R
Sbjct: 257 PSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARP 316
Query: 512 APP-----SPLCRSLSP 523
PP +PL +L P
Sbjct: 317 VPPPDNAATPLPATLPP 333
Score = 40.0 bits (92), Expect = 0.006
Identities = 56/190 (29%), Positives = 67/190 (35%), Gaps = 47/190 (24%)
Query: 336 PPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEP-----LRRRQKGKVEELGPP 390
PPP PP AL S P P S PL P P+ L Q PP
Sbjct: 590 PPPQAPP----ALASPPLQGLP----SPPLSPLATPPPQAPPXLALPPLQAPPSPPASPP 641
Query: 391 SAVRNQPEPQEQRERA-HLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIR 449
+ P PQ A HL LQA SPP PS P++
Sbjct: 642 LSPLATPSPQAPNALAVHL---LQAPFSPP------------------------PSPPVQ 674
Query: 450 MFASFHPSASTAGTSGDSGPPDRSPLEL---HIGFPTDIPKSAPHSMTASSSSVSSPSPG 506
A F P AS S + PP ++P L + P P S P S +A+ + P
Sbjct: 675 --APFSPPASPP-VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 731
Query: 507 LPRRSAPPSP 516
P PPSP
Sbjct: 732 APPLQVPPSP 741
Score = 38.9 bits (89), Expect = 0.013
Identities = 59/222 (26%), Positives = 78/222 (35%), Gaps = 27/222 (12%)
Query: 336 PPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPE--PLRRRQKGKVEELGPPSAV 393
PPP PP L + P P S P+ P P PL +V PP+++
Sbjct: 722 PPPQAPPP----LAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPP-SPPASL 776
Query: 394 RNQP--EPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIRMF 451
P +P Q A LQA SPP+ P Q+ F P+ + LP SP+
Sbjct: 777 PMSPLAKPPPQAPPALATPPLQALPSPPASFPGQA-------PFSPSAS--LPMSPL--- 824
Query: 452 ASFHPSASTAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPRRS 511
A+ P A + P P + P P P +SVS P L
Sbjct: 825 ATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP------DTSVSGPRLTLALAP 878
Query: 512 APPSPLCRSLSPGTGGGVRGGVGYLSRGDPVRVLARRVRPDG 553
PP P RS S G G + P + P+G
Sbjct: 879 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEG 920
Score = 34.3 bits (77), Expect = 0.31
Identities = 54/194 (27%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 346 GALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRER 405
GA P+ + PG RP G R P P + LG AV +P ER
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPV-----TPAALRVLGAAGAVGRKP----LAER 61
Query: 406 AHLQRALQASVSPPSPSPNQSYQGSSGYN--FRPTDARCLPSSPIRMFASFHPSASTAGT 463
A S P P +S G+S N RP + +P S P +S
Sbjct: 62 AGGIGGATIPESAPRAGPTRS-AGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRA 120
Query: 464 SGDSGPPDRSPLELHI--------GFPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPS 515
SG + P L I G T+ PK + S A + S P+PG P P+
Sbjct: 121 SGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDT-SGPTPGTP----SPA 175
Query: 516 PLCRSLSPGTGGGV 529
RS + GT G+
Sbjct: 176 MARRSRAAGTEVGL 189
Score = 31.6 bits (70), Expect = 2.0
Identities = 56/221 (25%), Positives = 75/221 (33%), Gaps = 50/221 (22%)
Query: 333 ARMPPPVEPPTGDGALTSFPS------GQGP-GGGVSRPLGKRRRPEPEPLRRRQKGKVE 385
A+ PP P L + PS GQ P S P+ P P+
Sbjct: 782 AKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQ----------- 830
Query: 386 ELGPP----SAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDAR 441
PP ++ P P LQA PP+P P+ S SG A
Sbjct: 831 --APPVLAAPLLQVPPSPPASP-------TLQAPRRPPTPGPDTSV---SGPRLTLALAP 878
Query: 442 CLPSSPIRMFASFHPSASTAG--TSGDSGPPDRSPLEL-------HIGFPTDIPKSAPHS 492
P P R PS++ +G +G S +P EL G P A +
Sbjct: 879 GPPPPPSR-----SPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 933
Query: 493 MTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGV 533
++ P+P L R AP +PL P TG G G+
Sbjct: 934 ACHPAAWSRGPAPPLAFRGAPGAPL--PWPPATGPGSADGL 972
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 47.0 bits (110), Expect = 5e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 82 ALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCV 140
+L E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR C+
Sbjct: 209 SLIDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRHCL 262
Query: 141 --------FAIATKRGGALKK 153
+ +GGA KK
Sbjct: 263 QSRARPADCVLCPNKGGAFKK 283
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.6 bits (109), Expect = 6e-05
Identities = 54/199 (27%), Positives = 73/199 (36%), Gaps = 29/199 (14%)
Query: 341 PPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPEPQ 400
PP G G L GPG G S P K P P P +++Q+ ++ P +QP P
Sbjct: 34 PPPGMG-LNQNRGPMGPGPGQSGP--KPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPH 90
Query: 401 EQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSAST 460
Q Q PP P + + G P A + S+P ++ + T
Sbjct: 91 PQPH--------QQQQPPPPPQDSSKPVVAQG----PGPAPGVGSAPPASSSAPPATPPT 138
Query: 461 AGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSPLCRS 520
+G SGP P T P AP SS ++P P+ PP P
Sbjct: 139 SGAPPGSGP---GPTPTPPPAVTSAPPGAPPPTPPSSGVPTTP----PQAGGPPPPPAAV 191
Query: 521 LSPGTG-------GGVRGG 532
PG G GG +GG
Sbjct: 192 PGPGPGPKQGPGPGGPKGG 210
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 45.1 bits (105), Expect = 2e-04
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 10/184 (5%)
Query: 340 EPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEP-LRRRQKGKVEELG-PPSAVRNQP 397
E G T P G R P P + RR + E+G P A +P
Sbjct: 130 EETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARP 189
Query: 398 EPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPS 457
P + R + A + S + PSP+ + + S+G + +R L SS + +
Sbjct: 190 RPPTEGPRKSVSSASEHSTTEPSPAARR--RPSAGGGLQRPASRSLSSSATPLSSPARSG 247
Query: 458 ASTAGT-SGDSGPPDRSPLELHIGFPTDI----PKSAPHSMTASSSSVSSPSPGL-PRRS 511
S GT + P P L P + +AP SSS +++PSP P S
Sbjct: 248 PSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPS 307
Query: 512 APPS 515
APPS
Sbjct: 308 APPS 311
Score = 40.8 bits (94), Expect = 0.003
Identities = 60/212 (28%), Positives = 74/212 (34%), Gaps = 25/212 (11%)
Query: 330 GLHARMPPPVEPPTGD-----GALTSFP-SGQGPGGGVSRPLGKRRRPEPEPLRRRQKGK 383
GL A PP V PP D G L+S P + P S + P P
Sbjct: 267 GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQA 326
Query: 384 VEELGPP------SAVRNQP-----EPQEQRERAHLQRALQASVSPP-----SPSPNQSY 427
LG P S + + P P Q A LQA SPP SP S
Sbjct: 327 TTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSP 386
Query: 428 QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIGFPTDIPK 487
Q + A P + A F P AS S + PP ++P L P +P
Sbjct: 387 QAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP-VSPSATPPSQAPPSL-AAPPLQVPP 444
Query: 488 SAPHSMTASSSSVSSPSPGLPRRSAPPSPLCR 519
S P S S S + P P +APP L +
Sbjct: 445 SPPAS-PPMSPSATPPPQAPPPLAAPPLQLAK 475
Score = 39.3 bits (90), Expect = 0.010
Identities = 57/225 (25%), Positives = 73/225 (32%), Gaps = 23/225 (10%)
Query: 331 LHARMPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGPP 390
+ A PP PP A P Q P + PL P P + PP
Sbjct: 409 VQAPFSPPASPPVSPSAT---PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 465
Query: 391 SAVR--NQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPI 448
A +P Q A LQA SPP+ P Q+ F P+ + LP SP+
Sbjct: 466 LAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQA-------PFSPSAS--LPMSPL 516
Query: 449 RMFASFHPSASTAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLP 508
A+ P A + P P + P P P +SVS P L
Sbjct: 517 ---ATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP------DTSVSGPRLTLA 567
Query: 509 RRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGDPVRVLARRVRPDG 553
PP P RS S G G + P + P+G
Sbjct: 568 LAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEG 612
Score = 32.3 bits (72), Expect = 1.2
Identities = 59/223 (26%), Positives = 77/223 (34%), Gaps = 45/223 (20%)
Query: 346 GALTSFPSGQGPGGGVSRPLGKRRRPEP-----------------EPLRRRQKGKVEELG 388
GA P+ + PG RP G R P P +PL R G
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 389 PPSAVR------NQPEPQEQRERA-HLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDAR 441
P SA R ++P + ERA + VS P + + G G A
Sbjct: 71 PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAE 130
Query: 442 CLPSSPIRMFASFHP--SASTAGTSGD-SGPPDRSP----------LELHIGFPTDIPKS 488
+ R A+ P SA +AG D SGP +P +G P P +
Sbjct: 131 ---ETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA 187
Query: 489 APHSMT-ASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVR 530
P T SVSS S + PSP R P GGG++
Sbjct: 188 RPRPPTEGPRKSVSSAS---EHSTTEPSPAARR-RPSAGGGLQ 226
Score = 31.6 bits (70), Expect = 2.0
Identities = 56/221 (25%), Positives = 75/221 (33%), Gaps = 50/221 (22%)
Query: 333 ARMPPPVEPPTGDGALTSFPS------GQGP-GGGVSRPLGKRRRPEPEPLRRRQKGKVE 385
A+ PP P L + PS GQ P S P+ P P+
Sbjct: 474 AKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQ----------- 522
Query: 386 ELGPP----SAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDAR 441
PP ++ P P LQA PP+P P+ S SG A
Sbjct: 523 --APPVLAAPLLQVPPSPPASP-------TLQAPRRPPTPGPDTSV---SGPRLTLALAP 570
Query: 442 CLPSSPIRMFASFHPSASTAG--TSGDSGPPDRSPLEL-------HIGFPTDIPKSAPHS 492
P P R PS++ +G +G S +P EL G P A +
Sbjct: 571 GPPPPPSR-----SPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 625
Query: 493 MTASSSSVSSPSPGLPRRSAPPSPLCRSLSPGTGGGVRGGV 533
++ P+P L R AP +PL P TG G G+
Sbjct: 626 ACHPAAWSRGPAPPLAFRGAPGAPL--PWPPATGPGSADGL 664
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.1 bits (105), Expect = 2e-04
Identities = 50/163 (30%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 362 SRPLGKRRRPEPEPLRRRQKGKVEELGPPSAVRNQPE-PQEQRERAHLQRALQASVSPPS 420
SR L + P P P+ R E + PP N+P P R A + QA PP
Sbjct: 257 SRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA----SSQAPPPPPP 312
Query: 421 PS---PNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRS---- 473
PS P SSG + P LP + + +S P S G SG PP
Sbjct: 313 PSRPGPPPLPPSSSGNDETPR----LPQRNLSLSSSTPPLPS-PGRSGPLPPPPSERPPP 367
Query: 474 PLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLPRRSAPPSP 516
P+ G +P P S S+S +P LP RS SP
Sbjct: 368 PVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSP 410
Score = 32.0 bits (71), Expect = 1.6
Identities = 53/206 (25%), Positives = 66/206 (32%), Gaps = 32/206 (15%)
Query: 333 ARMPPPVEPPTGDGALTSFPSGQG-------PGGGVS-------RPLGKRRRPEPEPLRR 378
++ PPP PP+ G PS G P +S P R P P P
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSE 363
Query: 379 RQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPT 438
R V + PP P P RAL A+ PS S S + RP
Sbjct: 364 RPPPPVRD--PPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGP----RPP 417
Query: 439 DARCLPSSPIRMFASFHPSASTAGTSGDSGPPDRSPLELHIGFP--TDIPKSAPHSMTAS 496
LP A P ST+ +G P E F +D+P P+ T
Sbjct: 418 ----LPPDRPSAGAPPPPPPSTSIRNGFQDSPCEDEWESRFYFHPISDLPPPEPYVQTTK 473
Query: 497 S------SSVSSPSPGLPRRSAPPSP 516
S + S R APP P
Sbjct: 474 SYPSKLARNESRSGSNRRERGAPPLP 499
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,371,237
Number of Sequences: 37866
Number of extensions: 1906514
Number of successful extensions: 12530
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 10502
Number of HSP's gapped (non-prelim): 2495
length of query: 567
length of database: 18,247,518
effective HSP length: 108
effective length of query: 459
effective length of database: 14,157,990
effective search space: 6498517410
effective search space used: 6498517410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.