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Search of human proteins with 61175244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61175244 brain expressed, X-linked 5 [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|228008288 brain expressed, X-linked 5 [Homo sapiens] 238 1e-63
gi|61175244 brain expressed, X-linked 5 [Homo sapiens] 238 1e-63
gi|46094060 nerve growth factor receptor (TNFRSF16) associated p... 117 2e-27
gi|7657044 nerve growth factor receptor (TNFRSF16) associated pr... 117 2e-27
gi|46094062 nerve growth factor receptor (TNFRSF16) associated p... 110 2e-25
gi|189095254 BEX family member 4 [Homo sapiens] 81 2e-16
gi|122937245 BEX family member 4 [Homo sapiens] 81 2e-16
gi|68533249 brain expressed, X-linked 1 [Homo sapiens] 78 2e-15
gi|14249132 brain expressed X-linked 2 [Homo sapiens] 74 3e-14
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo... 46 7e-06
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo... 46 7e-06
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo... 40 4e-04
gi|217272865 myotubularin related protein 4 [Homo sapiens] 34 0.029
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo... 30 0.42
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo... 30 0.42
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo... 30 0.42
gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens] 28 1.2
gi|117938759 GNAS complex locus XLas [Homo sapiens] 28 2.1
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 28 2.1
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 27 3.5
gi|10863913 solute carrier family 8 (sodium/calcium exchanger), ... 27 3.5
gi|163914373 solute carrier family 8 (sodium/calcium exchanger),... 27 3.5
gi|163914371 solute carrier family 8 (sodium/calcium exchanger),... 27 3.5
gi|163914369 solute carrier family 8 (sodium/calcium exchanger),... 27 3.5
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 27 3.5
gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens] 27 3.5
gi|158534059 formin binding protein 4 [Homo sapiens] 27 3.5
gi|25952087 potassium voltage-gated channel, shaker-related subf... 27 4.6
gi|84570137 homeobox B3 [Homo sapiens] 27 4.6
gi|5730124 zinc finger protein 217 [Homo sapiens] 26 6.0
>gi|228008288 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 238 bits (606), Expect = 1e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM 60
MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM
Sbjct: 1 MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM 60
Query: 61 IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP
Sbjct: 61 IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
>gi|61175244 brain expressed, X-linked 5 [Homo sapiens]
Length = 111
Score = 238 bits (606), Expect = 1e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM 60
MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM
Sbjct: 1 MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDM 60
Query: 61 IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP
Sbjct: 61 IDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
>gi|46094060 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 117 bits (293), Expect = 2e-27
Identities = 65/114 (57%), Positives = 81/114 (71%), Gaps = 6/114 (5%)
Query: 1 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI 58
M N+ +EN+ +E+ P+QN E LGGGE +P GN +G AP F +PNR ++
Sbjct: 1 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN-- 57
Query: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
D + GDGDDME FMEEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 58 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|7657044 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform b [Homo sapiens]
Length = 111
Score = 117 bits (293), Expect = 2e-27
Identities = 65/114 (57%), Positives = 81/114 (71%), Gaps = 6/114 (5%)
Query: 1 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI 58
M N+ +EN+ +E+ P+QN E LGGGE +P GN +G AP F +PNR ++
Sbjct: 1 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN-- 57
Query: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
D + GDGDDME FMEEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 58 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 111
>gi|46094062 nerve growth factor receptor (TNFRSF16) associated
protein 1 isoform a [Homo sapiens]
Length = 101
Score = 110 bits (276), Expect = 2e-25
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 15 PVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFM 72
P+QN E LGGGE +P GN +G AP F +PNR ++ D + GDGDDME FM
Sbjct: 4 PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--DGMGGDGDDMEIFM 61
Query: 73 EEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP 111
EEMRE+RRK+RELQLR LRIL+G+ HHDHHDEFCLMP
Sbjct: 62 EEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP 101
>gi|189095254 BEX family member 4 [Homo sapiens]
Length = 120
Score = 81.3 bits (199), Expect = 2e-16
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 10/113 (8%)
Query: 2 ENVPKENKVVEKAPVQNEAPA--LGGGEYQEPGGNVK-GVWAPPAPGFGEDVPNRLVDNI 58
EN +EN+ E+AP QNE + LGGGE Q+PGGN++ G P F +PNR +++
Sbjct: 15 ENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHN 74
Query: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
+ DD+ERF+ +M E++RK RE Q+R+ +R P D+H +FCL+P
Sbjct: 75 EA----RDDVERFVGQMMEIKRKTREQQMRHYMRF---QTPEPDNHYDFCLIP 120
>gi|122937245 BEX family member 4 [Homo sapiens]
Length = 120
Score = 81.3 bits (199), Expect = 2e-16
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 10/113 (8%)
Query: 2 ENVPKENKVVEKAPVQNEAPA--LGGGEYQEPGGNVK-GVWAPPAPGFGEDVPNRLVDNI 58
EN +EN+ E+AP QNE + LGGGE Q+PGGN++ G P F +PNR +++
Sbjct: 15 ENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVPNFRWAIPNRHIEHN 74
Query: 59 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
+ DD+ERF+ +M E++RK RE Q+R+ +R P D+H +FCL+P
Sbjct: 75 EA----RDDVERFVGQMMEIKRKTREQQMRHYMRF---QTPEPDNHYDFCLIP 120
>gi|68533249 brain expressed, X-linked 1 [Homo sapiens]
Length = 125
Score = 77.8 bits (190), Expect = 2e-15
Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 1 MENVPKENKVVEKAPVQNEAPAL--GGGEYQEPGGNVKGVWA-PPAPGFGEDVPNRLVDN 57
MEN +EN+ E+ + E AL GEY P GN + P + D+ +RL +
Sbjct: 14 MENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPILQYRWDMMHRLGEP 73
Query: 58 IDMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
+ + +MER EE+R+L K+RE QL +SLR + DPPHHDHHDEFCLMP
Sbjct: 74 QARMREE--NMERIGEEVRQLMEKLREKQLSHSLRAVSTDPPHHDHHDEFCLMP 125
>gi|14249132 brain expressed X-linked 2 [Homo sapiens]
Length = 128
Score = 73.6 bits (179), Expect = 3e-14
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 1 MENVPKEN-KVVEKAPVQNE----APALGGGEYQEPGGNVKGVWA-PPAPGFGEDVPNRL 54
+ENV +EN + EK V N+ A L EY P GN + P + D+ +RL
Sbjct: 14 VENVNQENDEKDEKEQVANKGEPLALPLNVSEYCVPRGNRRRFRVRQPILQYRWDIMHRL 73
Query: 55 VDNIDMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP 111
+ + + +MER EE+R+L K+RE QL +SLR + DPPHHDHHDEFCLMP
Sbjct: 74 GEPQARMREE--NMERIGEEVRQLMEKLREKQLSHSLRAVSTDPPHHDHHDEFCLMP 128
>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 45.8 bits (107), Expect = 7e-06
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 2 ENVPK--ENKVVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDN 57
+N+PK E++ +E P + E G QE GN +G P GF ED P R +D
Sbjct: 13 QNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDP 72
Query: 58 IDMIDGDGDDMERFMEEMRELRRK 81
+MI G D++ER EE+R +R K
Sbjct: 73 EEMIRG-VDELERLREEIRRVRNK 95
>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 45.8 bits (107), Expect = 7e-06
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 2 ENVPK--ENKVVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDN 57
+N+PK E++ +E P + E G QE GN +G P GF ED P R +D
Sbjct: 13 QNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDP 72
Query: 58 IDMIDGDGDDMERFMEEMRELRRK 81
+MI G D++ER EE+R +R K
Sbjct: 73 EEMIRG-VDELERLREEIRRVRNK 95
>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
sapiens]
Length = 100
Score = 40.0 bits (92), Expect = 4e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MENVPKENKVVEKA--PVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI 58
M+ KEN+ K P + E G E Q+ GN + F ED+ R +
Sbjct: 1 MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDE 60
Query: 59 DMIDGDGDDMERFMEEMRELRRKIREL 85
+M +GD+MER +EE+R LR+K R L
Sbjct: 61 EMTR-EGDEMERCLEEIRGLRKKFRAL 86
>gi|217272865 myotubularin related protein 4 [Homo sapiens]
Length = 1195
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 71 FMEEMRELRRKIRELQLRYSLRILIGDP--PHHDHHDEF-CL 109
+ +E+ +LRR++RELQ+R +R P P D+ D+F CL
Sbjct: 1032 YKQEVEQLRRQVRELQMRLDIRHCCAPPAEPPMDYEDDFTCL 1073
>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 19 EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFMEEMREL 78
E P G G+++ G+ K A P F D+ R + N +MI + +EEM+ +
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE-----LEEMKRV 140
Query: 79 RRKI 82
R K+
Sbjct: 141 RNKL 144
>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 19 EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFMEEMREL 78
E P G G+++ G+ K A P F D+ R + N +MI + +EEM+ +
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE-----LEEMKRV 140
Query: 79 RRKI 82
R K+
Sbjct: 141 RNKL 144
>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 19 EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMERFMEEMREL 78
E P G G+++ G+ K A P F D+ R + N +MI + +EEM+ +
Sbjct: 86 EQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQAADE-----LEEMKRV 140
Query: 79 RRKI 82
R K+
Sbjct: 141 RNKL 144
>gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 19 EAPALGGGEYQEPGGNVKGVWAPPAPG 45
E P +G + PGG KG W PAPG
Sbjct: 120 EEPRMGASGHSPPGGPGKGQW--PAPG 144
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 1 MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFG 47
+ P + + E+ PV+ EA + G GG V P+PG+G
Sbjct: 339 VSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKV------PSPGYG 379
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 62 DGDGDDMERFMEEMRELRRKIRELQ 86
D DGDD ER ++ RE RR+ R+ +
Sbjct: 48 DADGDDRERNRQKERERRREKRQTE 72
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 15 PVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRL 54
P+Q G +EPGG + W PP E P L
Sbjct: 1180 PLQGGPGQSTGPGREEPGGCTQMAWGPPGKAMAEVCPGGL 1219
>gi|10863913 solute carrier family 8 (sodium/calcium exchanger),
member 1 isoform A [Homo sapiens]
Length = 973
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 VVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMID---GD 64
V+ + ++ E G G Y G + +W P P FG+ + V + M+ G
Sbjct: 33 VIAETEMEGEGNETGECTGSYYCKKGVILPIWEPQDPSFGDKIARATVYFVAMVYMFLGV 92
Query: 65 GDDMERFMEEMRELRRKIRELQLR 88
+RFM + + + +E+ ++
Sbjct: 93 SIIADRFMSSIEVITSQEKEITIK 116
>gi|163914373 solute carrier family 8 (sodium/calcium exchanger),
member 1 isoform D [Homo sapiens]
Length = 937
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 VVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMID---GD 64
V+ + ++ E G G Y G + +W P P FG+ + V + M+ G
Sbjct: 33 VIAETEMEGEGNETGECTGSYYCKKGVILPIWEPQDPSFGDKIARATVYFVAMVYMFLGV 92
Query: 65 GDDMERFMEEMRELRRKIRELQLR 88
+RFM + + + +E+ ++
Sbjct: 93 SIIADRFMSSIEVITSQEKEITIK 116
>gi|163914371 solute carrier family 8 (sodium/calcium exchanger),
member 1 isoform C [Homo sapiens]
Length = 960
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 VVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMID---GD 64
V+ + ++ E G G Y G + +W P P FG+ + V + M+ G
Sbjct: 33 VIAETEMEGEGNETGECTGSYYCKKGVILPIWEPQDPSFGDKIARATVYFVAMVYMFLGV 92
Query: 65 GDDMERFMEEMRELRRKIRELQLR 88
+RFM + + + +E+ ++
Sbjct: 93 SIIADRFMSSIEVITSQEKEITIK 116
>gi|163914369 solute carrier family 8 (sodium/calcium exchanger),
member 1 isoform B [Homo sapiens]
Length = 968
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 VVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMID---GD 64
V+ + ++ E G G Y G + +W P P FG+ + V + M+ G
Sbjct: 33 VIAETEMEGEGNETGECTGSYYCKKGVILPIWEPQDPSFGDKIARATVYFVAMVYMFLGV 92
Query: 65 GDDMERFMEEMRELRRKIRELQLR 88
+RFM + + + +E+ ++
Sbjct: 93 SIIADRFMSSIEVITSQEKEITIK 116
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 23 LGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDG--------DDMERFMEE 74
+G E+ EPG V PP G P D+ DGDG D R + +
Sbjct: 557 MGCQEHVEPGPRWPDVARPPFNPHGGAEPGADSAEGDVGDGDGDFGAGVNKDGGSRVVVQ 616
Query: 75 MRELRRKIRELQLRYSLRILI 95
M E+ R + + + L +L+
Sbjct: 617 MEEVARTVNVVMVLVPLLLLL 637
>gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens]
Length = 205
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 21 PALGGGEYQEPGGNVKGVWAPPAPG 45
P +G + PGG KG W PAPG
Sbjct: 142 PRMGASGHSPPGGPGKGQW--PAPG 164
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 21 PALGGGEYQEPGGNVKGVWAPPAPGFGEDVP 51
P GE QE +G PPAPG ED P
Sbjct: 730 PPAEDGEIQEVEMEDEGSEEPPAPGTEEDTP 760
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 1 MENVPK---ENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPA-PGFGEDVPNRLVD 56
+E +P+ E +++ P ++ PA PG N GV APP+ P +P L D
Sbjct: 269 LETLPEFRDERELLRHPPAPHQPPA------PAPGANGSGVMAPPSGPTVAPLLPRTLAD 322
Query: 57 NIDMID 62
+++
Sbjct: 323 PFFIVE 328
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 18 NEAPALGGGEYQEPGGNVKGVWAPPAPGF 46
N A AL GG PG N G PP P F
Sbjct: 9 NAAAALFGGYSSYPGSNGFGFDVPPQPPF 37
>gi|5730124 zinc finger protein 217 [Homo sapiens]
Length = 1048
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 18/67 (26%)
Query: 15 PVQNEAPALGG----GEYQEPGGNVKGVWAPP-------------APGFGEDVPNRLVDN 57
PV P LG G P N WAPP A FGE +P RL +
Sbjct: 865 PVAPSQPTLGSSNINGSIDYPAKN-DSPWAPPGRDYFCNRSASNTAAEFGEPLPKRLKSS 923
Query: 58 IDMIDGD 64
+ +D D
Sbjct: 924 VVALDVD 930
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,446,737
Number of Sequences: 37866
Number of extensions: 262872
Number of successful extensions: 743
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 44
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.