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Search of human proteins with 61098457
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61098457 NHL repeat containing 3 isoform a [Homo sapiens]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61098457 NHL repeat containing 3 isoform a [Homo sapiens] 718 0.0
gi|62821785 NHL repeat containing 3 isoform b [Homo sapiens] 490 e-139
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 66 4e-11
gi|21070984 peptidylglycine alpha-amidating monooxygenase isofor... 59 6e-09
gi|21070982 peptidylglycine alpha-amidating monooxygenase isofor... 59 6e-09
gi|21070980 peptidylglycine alpha-amidating monooxygenase isofor... 59 6e-09
gi|21070974 peptidylglycine alpha-amidating monooxygenase isofor... 59 6e-09
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 57 2e-08
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 57 2e-08
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 57 3e-08
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 57 3e-08
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 45 1e-04
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 45 1e-04
gi|6005757 chromatin-specific transcription elongation factor la... 32 0.64
gi|167003331 N-methyl-D-aspartate receptor subunit 2B precursor ... 31 1.9
gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] 30 4.2
gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens] 29 5.4
gi|113865883 WD repeat domain 38 [Homo sapiens] 29 7.1
gi|4505001 LIM domain kinase 1 [Homo sapiens] 28 9.3
>gi|61098457 NHL repeat containing 3 isoform a [Homo sapiens]
Length = 347
Score = 718 bits (1854), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT 60
MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT
Sbjct: 1 MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT 60
Query: 61 GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS 120
GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS
Sbjct: 61 GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS 120
Query: 121 VWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIV 180
VWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIV
Sbjct: 121 VWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIV 180
Query: 181 DGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVF 240
DGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVF
Sbjct: 181 DGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVF 240
Query: 241 DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS 300
DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS
Sbjct: 241 DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS 300
Query: 301 TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS 347
TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS
Sbjct: 301 TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS 347
>gi|62821785 NHL repeat containing 3 isoform b [Homo sapiens]
Length = 280
Score = 490 bits (1262), Expect = e-139
Identities = 254/347 (73%), Positives = 264/347 (76%), Gaps = 67/347 (19%)
Query: 1 MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT 60
MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT
Sbjct: 1 MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFT 60
Query: 61 GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS 120
GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS
Sbjct: 61 GTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQS 120
Query: 121 VWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIV 180
VWITDVGS F +L G+ GT P +F+ P + ++ G +++
Sbjct: 121 VWITDVGSDF---------------MILWLHGENGT--GPAKFNIPHSVTLDSAGRVWVA 163
Query: 181 DGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVF 240
D RGNKRIQVF
Sbjct: 164 D--------------------------------------------------RGNKRIQVF 173
Query: 241 DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS 300
DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS
Sbjct: 174 DKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVIS 233
Query: 301 TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS 347
TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS
Sbjct: 234 TIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS 280
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 66.2 bits (160), Expect = 4e-11
Identities = 87/333 (26%), Positives = 138/333 (41%), Gaps = 59/333 (17%)
Query: 31 RNFTFAVSWRTEKILYRLDVGWPKHPEYFTGTTFCVAVDSLNGLVYIGQRGDNIPKILVF 90
+N T+ VS+R + L V ++ + F V V S V IG +P +
Sbjct: 544 QNGTYVVSYRPQLEGEHL-VSVTLCNQHIENSPFKVVVKSGRSYVGIG-----LPGLSFG 597
Query: 91 TE---DGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQV 147
+E DG R W +VD I A + ++ + G
Sbjct: 598 SEGDSDGKLCRPWGVSVDKEGYIIVADRS---------------NNRIQVFKPCGAFHHK 642
Query: 148 LGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENG 207
GT G + P QFD PA + + + I + D D N+R+ + + L GE G
Sbjct: 643 FGTLGSR-----PGQFDRPAGVACDASRRIVVADKD---NHRIQIFTFEGQFLLKFGEKG 694
Query: 208 TGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTEEG-------- 259
T +FN P V ++S G++ V+D N RIQ+F D G + N + EG
Sbjct: 695 TKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPD-----GVFLNKYGFEGALWKHFDS 749
Query: 260 PSSVRFTPDGKYLIVAQLNLSRLSVV-----AAPPVGSIGECSVISTIQLADQVLPHLLE 314
P V F +G +L+V N RL V+ +A +GS G + + P +
Sbjct: 750 PRGVAFNHEG-HLVVTDFNNHRLLVIHPDCQSARFLGSEGTGN-------GQFLRPQGVA 801
Query: 315 VDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS 347
VD++ G + VA+ +VQ + S++ FG+
Sbjct: 802 VDQE-GRIIVADSRNHRVQMFESNGSFLCKFGA 833
Score = 59.3 bits (142), Expect = 5e-09
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 91 TEDGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGT 150
T++G F W+ V++ I + T H ++ + G + G
Sbjct: 695 TKNGQFNYPWDVAVNSEGKILVSDTR---------------NHRIQLFGPDGVFLNKYGF 739
Query: 151 PGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGP 210
G FD+P + G + + D + N+RL+ + D G GTG
Sbjct: 740 EGALWK-----HFDSPRGVAFNHEGHLVVTDFN---NHRLLVIHPDCQSARFLGSEGTGN 791
Query: 211 AKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWL---GAWNNCFTE-EGPSSVRFT 266
+F P V +D GR+ VAD N R+Q+F+ + G +L GA + F + + PS + T
Sbjct: 792 GQFLRPQGVAVDQEGRIIVADSRNHRVQMFESN-GSFLCKFGAQGSGFGQMDRPSGIAIT 850
Query: 267 PDGKYLIV 274
PDG ++V
Sbjct: 851 PDGMIVVV 858
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 86 KILVFTEDGYFLRAWNYT------VDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYS 139
+I +F DG FL + + D+P G+ + +E + +TD F H +
Sbjct: 723 RIQLFGPDGVFLNKYGFEGALWKHFDSPRGV---AFNHEGHLVVTD----FNNHRLLVIH 775
Query: 140 SFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMI 199
+ LG+ G QF P + V+ G I + D N+R+ +
Sbjct: 776 PDCQSARFLGSEGTGNG-----QFLRPQGVAVDQEGRIIVADSR---NHRVQMFESNGSF 827
Query: 200 LWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVF 240
L G G+G + + P + + G + V D GN RI VF
Sbjct: 828 LCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
>gi|21070984 peptidylglycine alpha-amidating monooxygenase isoform a
preproprotein [Homo sapiens]
Length = 974
Score = 58.9 bits (141), Expect = 6e-09
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKY--SSFGDLVQVLGTPGKKGTSLNPLQFD 164
PHG+ S + + W+TDV H V K ++ V +LG + G+ N F
Sbjct: 581 PHGL---SIDKDGNYWVTDVAL----HQVFKLDPNNKEGPVLILGRSMQPGSDQN--HFC 631
Query: 165 NPAELYVED-TGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTG----PAKFNIPHSV 219
P ++ V+ TG IY+ DG N+R+++ S + GE +G P +F +PHS+
Sbjct: 632 QPTDVAVDPGTGAIYV--SDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSL 689
Query: 220 TL-DSAGRVWVADRGNKRIQVFDKDTGEWL 248
L G++ VADR N RIQ F DT E++
Sbjct: 690 ALVPLLGQLCVADRENGRIQCFKTDTKEFV 719
>gi|21070982 peptidylglycine alpha-amidating monooxygenase isoform d
preproprotein [Homo sapiens]
Length = 887
Score = 58.9 bits (141), Expect = 6e-09
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKY--SSFGDLVQVLGTPGKKGTSLNPLQFD 164
PHG+ S + + W+TDV H V K ++ V +LG + G+ N F
Sbjct: 581 PHGL---SIDKDGNYWVTDVAL----HQVFKLDPNNKEGPVLILGRSMQPGSDQN--HFC 631
Query: 165 NPAELYVED-TGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTG----PAKFNIPHSV 219
P ++ V+ TG IY+ DG N+R+++ S + GE +G P +F +PHS+
Sbjct: 632 QPTDVAVDPGTGAIYV--SDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSL 689
Query: 220 TL-DSAGRVWVADRGNKRIQVFDKDTGEWL 248
L G++ VADR N RIQ F DT E++
Sbjct: 690 ALVPLLGQLCVADRENGRIQCFKTDTKEFV 719
>gi|21070980 peptidylglycine alpha-amidating monooxygenase isoform c
preproprotein [Homo sapiens]
Length = 866
Score = 58.9 bits (141), Expect = 6e-09
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKY--SSFGDLVQVLGTPGKKGTSLNPLQFD 164
PHG+ S + + W+TDV H V K ++ V +LG + G+ N F
Sbjct: 474 PHGL---SIDKDGNYWVTDVAL----HQVFKLDPNNKEGPVLILGRSMQPGSDQN--HFC 524
Query: 165 NPAELYVED-TGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTG----PAKFNIPHSV 219
P ++ V+ TG IY+ DG N+R+++ S + GE +G P +F +PHS+
Sbjct: 525 QPTDVAVDPGTGAIYV--SDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSL 582
Query: 220 TL-DSAGRVWVADRGNKRIQVFDKDTGEWL 248
L G++ VADR N RIQ F DT E++
Sbjct: 583 ALVPLLGQLCVADRENGRIQCFKTDTKEFV 612
>gi|21070974 peptidylglycine alpha-amidating monooxygenase isoform b
preproprotein [Homo sapiens]
Length = 905
Score = 58.9 bits (141), Expect = 6e-09
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKY--SSFGDLVQVLGTPGKKGTSLNPLQFD 164
PHG+ S + + W+TDV H V K ++ V +LG + G+ N F
Sbjct: 581 PHGL---SIDKDGNYWVTDVAL----HQVFKLDPNNKEGPVLILGRSMQPGSDQN--HFC 631
Query: 165 NPAELYVED-TGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTG----PAKFNIPHSV 219
P ++ V+ TG IY+ DG N+R+++ S + GE +G P +F +PHS+
Sbjct: 632 QPTDVAVDPGTGAIYV--SDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSL 689
Query: 220 TL-DSAGRVWVADRGNKRIQVFDKDTGEWL 248
L G++ VADR N RIQ F DT E++
Sbjct: 690 ALVPLLGQLCVADRENGRIQCFKTDTKEFV 719
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 162 QFDNPAELYVEDTGDIYIVDGDGGLNNRLIKL-SQDFMILWLHGENGTGPAKFNIPHSVT 220
QF P V +I I D +N +K+ +Q+ + G NG G +FN P V
Sbjct: 621 QFAGPHFAAVNSNNEIIITD----FHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVA 676
Query: 221 LDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTE-EGPSSVRFTPDGKYLI 273
+DS G + VAD GN RIQVFD +G +L N GP + T DG ++
Sbjct: 677 VDSNGNIIVADWGNSRIQVFD-GSGSFLSYINTSADPLYGPQGLALTSDGHVVV 729
Score = 38.1 bits (87), Expect = 0.012
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 145 VQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHG 204
V + + GK T + + P + V+ G I +VD + + I+ G
Sbjct: 557 VSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACC---VFIFQPNGKIVTRFG 613
Query: 205 ENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWL------GAWNNCFTEE 258
G G +F PH ++S + + D N ++VF+++ GE++ G N F
Sbjct: 614 SRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVFNQE-GEFMLKFGSNGEGNGQF--N 670
Query: 259 GPSSVRFTPDGKYLIVAQLNLSRLSV 284
P+ V +G +IVA SR+ V
Sbjct: 671 APTGVAVDSNGN-IIVADWGNSRIQV 695
Score = 33.9 bits (76), Expect = 0.22
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNP 166
PH FAA + + ITD F H+VK ++ G+ + G+ G+ QF+ P
Sbjct: 625 PH--FAAVNSNNEII-ITD----FHNHSVKVFNQEGEFMLKFGSNGEGNG-----QFNAP 672
Query: 167 AELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGR 226
+ V+ G+I + D G ++ S F+ T P + L S G
Sbjct: 673 TGVAVDSNGNIIVADW-GNSRIQVFDGSGSFL-----SYINTSADPLYGPQGLALTSDGH 726
Query: 227 VWVADRGNKRIQVF 240
V VAD GN +V+
Sbjct: 727 VVVADSGNHCFKVY 740
Score = 32.7 bits (73), Expect = 0.49
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 204 GENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTEEG---- 259
G G +F V + G++ +AD N+ +Q+F D G + + F G
Sbjct: 477 GTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIFSND-----GQFKSRFGIRGRSPG 531
Query: 260 ----PSSVRFTPDGKYLIVAQLNLSRLSVVAAPP--VGSIGECSVISTIQLADQVLPHLL 313
P+ V P G +I+A + +S+ ++ IG ++ ++ H++
Sbjct: 532 QLQRPTGVAVHPSGD-IIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHII 590
Query: 314 EVDRKTGAVYVAEIGAKQVQKY 335
VD K V++ + K V ++
Sbjct: 591 VVDNKACCVFIFQPNGKIVTRF 612
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 162 QFDNPAELYVEDTGDIYIVDGDGGLNNRLIKL-SQDFMILWLHGENGTGPAKFNIPHSVT 220
QF P V +I I D +N +K+ +Q+ + G NG G +FN P V
Sbjct: 648 QFAGPHFAAVNSNNEIIITD----FHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVA 703
Query: 221 LDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTE-EGPSSVRFTPDGKYLI 273
+DS G + VAD GN RIQVFD +G +L N GP + T DG ++
Sbjct: 704 VDSNGNIIVADWGNSRIQVFD-GSGSFLSYINTSADPLYGPQGLALTSDGHVVV 756
Score = 38.1 bits (87), Expect = 0.012
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 145 VQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHG 204
V + + GK T + + P + V+ G I +VD + + I+ G
Sbjct: 584 VSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACC---VFIFQPNGKIVTRFG 640
Query: 205 ENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWL------GAWNNCFTEE 258
G G +F PH ++S + + D N ++VF+++ GE++ G N F
Sbjct: 641 SRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVFNQE-GEFMLKFGSNGEGNGQF--N 697
Query: 259 GPSSVRFTPDGKYLIVAQLNLSRLSV 284
P+ V +G +IVA SR+ V
Sbjct: 698 APTGVAVDSNGN-IIVADWGNSRIQV 722
Score = 33.9 bits (76), Expect = 0.22
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 107 PHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNP 166
PH FAA + + ITD F H+VK ++ G+ + G+ G+ QF+ P
Sbjct: 652 PH--FAAVNSNNEII-ITD----FHNHSVKVFNQEGEFMLKFGSNGEGNG-----QFNAP 699
Query: 167 AELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGR 226
+ V+ G+I + D G ++ S F+ T P + L S G
Sbjct: 700 TGVAVDSNGNIIVADW-GNSRIQVFDGSGSFL-----SYINTSADPLYGPQGLALTSDGH 753
Query: 227 VWVADRGNKRIQVF 240
V VAD GN +V+
Sbjct: 754 VVVADSGNHCFKVY 767
Score = 32.7 bits (73), Expect = 0.49
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 204 GENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTEEG---- 259
G G +F V + G++ +AD N+ +Q+F D G + + F G
Sbjct: 504 GTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIFSND-----GQFKSRFGIRGRSPG 558
Query: 260 ----PSSVRFTPDGKYLIVAQLNLSRLSVVAAPP--VGSIGECSVISTIQLADQVLPHLL 313
P+ V P G +I+A + +S+ ++ IG ++ ++ H++
Sbjct: 559 QLQRPTGVAVHPSGD-IIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHII 617
Query: 314 EVDRKTGAVYVAEIGAKQVQKY 335
VD K V++ + K V ++
Sbjct: 618 VVDNKACCVFIFQPNGKIVTRF 639
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 155 GTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKL-SQDFMILWLHGENGTGPAKF 213
G F P + V + +I + D +N +K+ S D L+ G +G G +F
Sbjct: 614 GRGATDRHFAGPHFVAVNNKNEIVVTD----FHNHSVKVYSADGEFLFKFGSHGEGNGQF 669
Query: 214 NIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTE-EGPSSVRFTPDGKYL 272
N P V +DS G + VAD GN RIQVFD +G +L N GP + T DG +
Sbjct: 670 NAPTGVAVDSNGNIIVADWGNSRIQVFD-SSGSFLSYINTSAEPLYGPQGLALTSDGHVV 728
Query: 273 I 273
+
Sbjct: 729 V 729
Score = 36.2 bits (82), Expect = 0.045
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 126 VGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGG 185
V + F H+VK YS+ G+ + G+ G+ QF+ P + V+ G+I + D G
Sbjct: 637 VVTDFHNHSVKVYSADGEFLFKFGSHGEGNG-----QFNAPTGVAVDSNGNIIVADW-GN 690
Query: 186 LNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGN 234
++ S F+ T P + L S G V VAD GN
Sbjct: 691 SRIQVFDSSGSFL-----SYINTSAEPLYGPQGLALTSDGHVVVADAGN 734
Score = 32.0 bits (71), Expect = 0.84
Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 43/273 (15%)
Query: 78 GQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKK 137
G G +P +V ++G + YT T + + LY Q V GS F ++
Sbjct: 368 GPDGTRLPVPVVDHKNGTYELV--YTARTEGELLLSVLLYGQPVR----GSPFRVRALRP 421
Query: 138 YS---SFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLS 194
S D+ + + +PG G+ + P+ +Y TG D + + L+
Sbjct: 422 GDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMY--STGG---KRKDNPIEDELV--- 473
Query: 195 QDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNC 254
F + G G +F V+ S+GR+ VAD N+ IQVF + G +
Sbjct: 474 --FRV----GSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNE-----GQFKFR 522
Query: 255 FTEEG--------PSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVG----SIGECSVISTI 302
F G P+ V +G +IVA + +S+ + P G IG ++
Sbjct: 523 FGVRGRSPGQLQRPTGVAVDTNGD-IIVADYDNRWVSIFS--PEGKFKTKIGAGRLMGPK 579
Query: 303 QLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKY 335
+A H++ VD K+ V+ + K V ++
Sbjct: 580 GVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRF 612
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 155 GTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKL-SQDFMILWLHGENGTGPAKF 213
G F P + V + +I + D +N +K+ S D L+ G +G G +F
Sbjct: 614 GRGATDRHFAGPHFVAVNNKNEIVVTD----FHNHSVKVYSADGEFLFKFGSHGEGNGQF 669
Query: 214 NIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTE-EGPSSVRFTPDGKYL 272
N P V +DS G + VAD GN RIQVFD +G +L N GP + T DG +
Sbjct: 670 NAPTGVAVDSNGNIIVADWGNSRIQVFD-SSGSFLSYINTSAEPLYGPQGLALTSDGHVV 728
Query: 273 I 273
+
Sbjct: 729 V 729
Score = 36.2 bits (82), Expect = 0.045
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 126 VGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGG 185
V + F H+VK YS+ G+ + G+ G+ QF+ P + V+ G+I + D G
Sbjct: 637 VVTDFHNHSVKVYSADGEFLFKFGSHGEGNG-----QFNAPTGVAVDSNGNIIVADW-GN 690
Query: 186 LNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGN 234
++ S F+ T P + L S G V VAD GN
Sbjct: 691 SRIQVFDSSGSFL-----SYINTSAEPLYGPQGLALTSDGHVVVADAGN 734
Score = 32.0 bits (71), Expect = 0.84
Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 43/273 (15%)
Query: 78 GQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKK 137
G G +P +V ++G + YT T + + LY Q V GS F ++
Sbjct: 368 GPDGTRLPVPVVDHKNGTYELV--YTARTEGELLLSVLLYGQPVR----GSPFRVRALRP 421
Query: 138 YS---SFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLS 194
S D+ + + +PG G+ + P+ +Y TG D + + L+
Sbjct: 422 GDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMY--STGG---KRKDNPIEDELV--- 473
Query: 195 QDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNC 254
F + G G +F V+ S+GR+ VAD N+ IQVF + G +
Sbjct: 474 --FRV----GSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNE-----GQFKFR 522
Query: 255 FTEEG--------PSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVG----SIGECSVISTI 302
F G P+ V +G +IVA + +S+ + P G IG ++
Sbjct: 523 FGVRGRSPGQLQRPTGVAVDTNGD-IIVADYDNRWVSIFS--PEGKFKTKIGAGRLMGPK 579
Query: 303 QLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKY 335
+A H++ VD K+ V+ + K V ++
Sbjct: 580 GVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRF 612
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 195 QDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDK 242
Q + L G G+ P FN+P S+ + S G V VADRGN RIQVF +
Sbjct: 353 QQCLFLKKMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTR 400
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 195 QDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDK 242
Q + L G G+ P FN+P S+ + S G V VADRGN RIQVF +
Sbjct: 353 QQCLFLKKMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTR 400
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 32.3 bits (72), Expect = 0.64
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 232 RGNKRIQVFDKDT--GEWLGAWNNCFTEEGPSSVRFTPDGKYLIV----AQLNLSR 281
+ K+I VF KD GE++ +WN+C +EG + + Y I +LNL +
Sbjct: 129 KNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMK 184
>gi|167003331 N-methyl-D-aspartate receptor subunit 2B precursor
[Homo sapiens]
Length = 1484
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 176 DIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWV 229
D+ + DGD + N+L KL ++L+ E T F + +SV L G W+
Sbjct: 206 DMSLDDGDSKIQNQLKKLQSPIILLYCTKEEAT--YIFEVANSVGLTGYGYTWI 257
>gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]
Length = 2769
Score = 29.6 bits (65), Expect = 4.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 211 AKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKD 243
AK N P S+ + + G ++VAD GN RI+ K+
Sbjct: 1534 AKLNTPSSLAVCADGELYVADLGNIRIRFIRKN 1566
>gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens]
Length = 2765
Score = 29.3 bits (64), Expect = 5.4
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 164 DNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAK----------- 212
++ + + + TG +YI + D NRL +++ + I L G K
Sbjct: 1466 ESASAIAISHTGVLYITETDEKKINRLRQVTTNGEICLLAGAASDCDCKNDVNCNCYSGD 1525
Query: 213 --------FNIPHSVTLDSAGRVWVADRGNKRIQVFDKD 243
N P S+ + G +++AD GN RI+ K+
Sbjct: 1526 DAYATDAILNSPSSLAVAPDGTIYIADLGNIRIRAVSKN 1564
>gi|113865883 WD repeat domain 38 [Homo sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 7.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 223 SAGRVWVADRGNKR-IQVFDKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSR 281
S +W+A G R ++V+D +TG+ L + + FTPDGK L+ + +R
Sbjct: 242 SPDELWLASAGYSRMVKVWDCNTGKCLETLKGVL--DVAHTCAFTPDGKILVSGAADQTR 299
Query: 282 LSV 284
+
Sbjct: 300 RQI 302
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 28.5 bits (62), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 98 RAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGD-LVQVLGTP 151
R + ++D PHG T + +V + V G VK GD ++++ GTP
Sbjct: 176 RGLSVSIDPPHGPPGCGTEHSHTVRVQGVDPGCMSPDVKNSIHVGDRILEINGTP 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,221,095
Number of Sequences: 37866
Number of extensions: 648559
Number of successful extensions: 1184
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 43
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.