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Search of human proteins with 60302914
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60302914 integral membrane protein 2C isoform 2 [Homo
sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens] 463 e-131
gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens] 445 e-125
gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens] 328 2e-90
gi|11527402 integral membrane protein 2B [Homo sapiens] 152 2e-37
gi|4758224 integral membrane protein 2A [Homo sapiens] 119 3e-27
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1... 32 0.35
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1... 32 0.35
gi|5174449 H1 histone family, member X [Homo sapiens] 30 1.7
gi|163792194 N2,N2-dimethylguanosine tRNA methyltransferase-like... 30 2.3
gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b ... 29 3.0
gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 29 3.0
gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B... 29 3.0
gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B... 29 3.0
gi|4503833 frizzled 7 [Homo sapiens] 29 3.9
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 29 3.9
gi|207028935 microfibrillar-associated protein 2 isoform b precu... 29 3.9
gi|207028905 microfibrillar-associated protein 2 isoform b precu... 29 3.9
gi|4505157 microfibrillar-associated protein 2 isoform a precurs... 29 3.9
gi|9665259 microfibrillar-associated protein 2 isoform a precurs... 29 3.9
gi|116875834 zinc finger protein 74 [Homo sapiens] 29 3.9
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 28 5.0
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 28 5.0
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 28 5.0
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 28 5.0
gi|151301175 hypothetical protein LOC58489 [Homo sapiens] 28 5.0
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 28 6.6
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 28 6.6
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 28 6.6
gi|153070260 myristoylated alanine-rich protein kinase C substra... 28 6.6
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 28 8.6
>gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens]
Length = 230
Score = 463 bits (1192), Expect = e-131
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVVTEHVSDKEALGSF 180
YLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVVTEHVSDKEALGSF
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVVTEHVSDKEALGSF 180
Query: 181 IYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV 230
IYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 181 IYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV 230
>gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens]
Length = 267
Score = 445 bits (1144), Expect = e-125
Identities = 230/267 (86%), Positives = 230/267 (86%), Gaps = 37/267 (13%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQR------------------------------ 150
YLDENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
Query: 151 -------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 203
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
Query: 204 KRGAKNCNAIRHFENTFVVETLICGVV 230
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
>gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens]
Length = 220
Score = 328 bits (841), Expect = 2e-90
Identities = 183/267 (68%), Positives = 183/267 (68%), Gaps = 84/267 (31%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR-------------------- 40
Query: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 41 ---------------------------LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 73
Query: 121 YLDENYERINVPVPQFGGGDPADIIHDFQR------------------------------ 150
YLDENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 74 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 133
Query: 151 -------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 203
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 134 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 193
Query: 204 KRGAKNCNAIRHFENTFVVETLICGVV 230
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 194 KRGAKNCNAIRHFENTFVVETLICGVV 220
>gi|11527402 integral membrane protein 2B [Homo sapiens]
Length = 266
Score = 152 bits (385), Expect = 2e-37
Identities = 94/276 (34%), Positives = 135/276 (48%), Gaps = 60/276 (21%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRA 52
Query: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E S +
Sbjct: 53 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPSADAPA 109
Query: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRR----------------- 151
+EE++KI+ +E E I+VPVP+F DPA+I+HDF ++
Sbjct: 110 ALYQTIEENIKIFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 169
Query: 152 --------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 191
GTYLPQ+Y+I E MV+T+ + + + LG FIY LC+ K+TY
Sbjct: 170 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETY 229
Query: 192 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 227
+L+RR T + I KR A NC AIRHFEN F VETLIC
Sbjct: 230 KLQRRETIKGIQKREASNCFAIRHFENKFAVETLIC 265
>gi|4758224 integral membrane protein 2A [Homo sapiens]
Length = 263
Score = 119 bits (297), Expect = 3e-27
Identities = 86/271 (31%), Positives = 125/271 (46%), Gaps = 54/271 (19%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
MVKI+F A ++ ++A + + + T+IL +E + K G S G C
Sbjct: 1 MVKIAFNTPTA-VQKEEARQDVEALLSRTVRTQIL---TGKELRVATQEKEGSS--GRCM 54
Query: 61 LSM-GMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDS------LSSQVRTQME 113
L++ G+ +L GL+ IY+YF + + +R + + DS L +
Sbjct: 55 LTLLGLSFILAGLIVGGACIYKYF----MPKSTIYRGEMCFFDSEDPANSLRGGEPNFLP 110
Query: 114 LEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQR----------------------- 150
+ E+ I D+N I+VPVP F DPA IIHDF++
Sbjct: 111 VTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIV 170
Query: 151 --------------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRR 196
G YLPQTY+++E++V E + D LG FIY LCN + ++RLRRR
Sbjct: 171 MPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRR 230
Query: 197 ATRRRINKRGAKNCNAIRHFENTFVVETLIC 227
NKR C IRHF N F+VET IC
Sbjct: 231 DLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform b [Homo sapiens]
Length = 2161
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 107 QVRTQMELEEDVKIYLDENYERINV-PVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEM 165
++R + +LEED+K YLD + ++ P + GG+ +R T +P + + E
Sbjct: 424 KLREKQQLEEDLKGYLDWITQAEDIDPENEEEGGEEG-------KRNTSMPTS---ETES 473
Query: 166 VVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNA 212
V TE+VS + LC +L RR RR N+ + C A
Sbjct: 474 VNTENVSGEGENRGCCGSLCQAISKSKLSRR--WRRWNRFNRRRCRA 518
>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform c [Homo sapiens]
Length = 2137
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 107 QVRTQMELEEDVKIYLDENYERINV-PVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEM 165
++R + +LEED+K YLD + ++ P + GG+ +R T +P + + E
Sbjct: 424 KLREKQQLEEDLKGYLDWITQAEDIDPENEEEGGEEG-------KRNTSMPTS---ETES 473
Query: 166 VVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNA 212
V TE+VS + LC +L RR RR N+ + C A
Sbjct: 474 VNTENVSGEGENRGCCGSLCQAISKSKLSRR--WRRWNRFNRRRCRA 518
>gi|5174449 H1 histone family, member X [Homo sapiens]
Length = 213
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRG 52
PA A A KA +AP A + PAR ++P Q K+G
Sbjct: 131 PAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKG 175
>gi|163792194 N2,N2-dimethylguanosine tRNA methyltransferase-like
[Homo sapiens]
Length = 733
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 ASASAPAPASATEILLTPAREEQPPQHRSKRGGSV 55
ASA APAPA A L+P+ P + +SKR S+
Sbjct: 50 ASAPAPAPALAQAPALSPSLASAPEEAKSKRHISI 84
>gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b
[Homo sapiens]
Length = 1075
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
G D +A P+S +I LT R E P + R GS G + Y
Sbjct: 856 GPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINY 901
>gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a
[Homo sapiens]
Length = 1099
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
G D +A P+S +I LT R E P + R GS G + Y
Sbjct: 880 GPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINY 925
>gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B,
member 5 isoform 3 [Homo sapiens]
Length = 491
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 10 VAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGMVVLL 69
V+G GD + + S P PA + LTP + PQ S G +G V +S+ V+LL
Sbjct: 317 VSGPSGDPSLSPTGSTPTPAGPEDQPLTPTGLD--PQ--SGLGRHLGVVTGVSVAFVLLL 372
Query: 70 MGLVF 74
L+F
Sbjct: 373 FLLLF 377
>gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B,
member 5 isoform 1 [Homo sapiens]
Length = 591
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 10 VAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGMVVLL 69
V+G GD + + S P PA + LTP + PQ S G +G V +S+ V+LL
Sbjct: 417 VSGPSGDPSLSPTGSTPTPAGPEDQPLTPTGLD--PQ--SGLGRHLGVVTGVSVAFVLLL 472
Query: 70 MGLVF 74
L+F
Sbjct: 473 FLLLF 477
>gi|4503833 frizzled 7 [Homo sapiens]
Length = 574
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 52 GGSVGGVCYLSMGMVVLLMGLVFASVYIYRY 82
G + GVCY+ + V L G V A +++Y +
Sbjct: 404 GDLLSGVCYVGLSSVDALRGFVLAPLFVYLF 434
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPAS-ATEILLTPAREEQPPQHRSKRG 52
P + G G K D S P PA AT+ L P PP R G
Sbjct: 457 PGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSG 502
>gi|207028935 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 28.9 bits (63), Expect = 3.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 76 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 134
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 135 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 171
>gi|207028905 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 28.9 bits (63), Expect = 3.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 76 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 134
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 135 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 171
>gi|4505157 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 3.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 77 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 135
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 136 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 172
>gi|9665259 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 3.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 23 ASAPAPASA----TEILLTPAREEQPPQ------HRSKRGGSVGGVCYLSMGMV-VLLMG 71
A P P +A TE REEQ P HR + + VC+ S+ V V+
Sbjct: 77 APTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQ-CLNEVCFYSLRRVYVINKE 135
Query: 72 LVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQV 108
+ +V + A L RD F +CGV+ L V
Sbjct: 136 ICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSV 172
>gi|116875834 zinc finger protein 74 [Homo sapiens]
Length = 644
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 14 KGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
K +A + APA A E TP+ E+ PQ R +RG G
Sbjct: 202 KNVQATEGRTKAPARLCAGENASTPSEPEKFPQVRRQRGAGAG 244
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 PAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVG 56
P VA + AS PAP + E+ P RE QPP H GS+G
Sbjct: 3 PQVAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPP-HLPPTPGSLG 50
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 15 GDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSMGM 65
G+ A A A+AP PA A+ I + PA P Q + GG + + G+
Sbjct: 733 GNSAAPAPATAPTPAPASTIKIVPAHVPTPIQ------PTFGGATHSAFGL 777
>gi|151301175 hypothetical protein LOC58489 [Homo sapiens]
Length = 329
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 21 ASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCYLSM 63
A ASAPAPA AT A + PQ + G+ G C L +
Sbjct: 52 AGASAPAPAQAT---AAAAAAQPAPQQPEEGAGAGPGACSLHL 91
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 117 DVKIYLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVV 167
D+ ++ N + P+ FGG P RGT +P+ ++QEE+ +
Sbjct: 977 DISNFISPNPIVLPSPLTSFGGSCP--------ERGTIVPELQVVQEEIPI 1019
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 117 DVKIYLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVV 167
D+ ++ N + P+ FGG P RGT +P+ ++QEE+ +
Sbjct: 976 DISNFISPNPIVLPSPLTSFGGSCP--------ERGTIVPELQVVQEEIPI 1018
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 117 DVKIYLDENYERINVPVPQFGGGDPADIIHDFQRRGTYLPQTYIIQEEMVV 167
D+ ++ N + P+ FGG P RGT +P+ ++QEE+ +
Sbjct: 977 DISNFISPNPIVLPSPLTSFGGSCP--------ERGTIVPELQVVQEEIPI 1019
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 7 QPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGS 54
+PA AG A PA A+A E +P +E P + + GS
Sbjct: 71 EPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGS 118
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 27.7 bits (60), Expect = 8.6
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 110 TQMELEEDVKIYLDE-NYERINVPVP----------QFGGGDPADIIHDFQRRGTYL-PQ 157
T + + D ++ DE N +++P + G GD AD + GT PQ
Sbjct: 1654 TSLSMSRDASVFQDESNMSVLDIPSATPEKQVTQEGEDGDGDLAD-----EEEGTVQQPQ 1708
Query: 158 TYIIQEEMVVTEHVSDKEALGS 179
++ E+++++E D+E GS
Sbjct: 1709 ASVLYEDLLMSEGEDDEEDAGS 1730
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,763,544
Number of Sequences: 37866
Number of extensions: 401629
Number of successful extensions: 1604
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 41
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.