Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DNAJC18 Sequence: fasta or formatted (358aa) NCBI GI: 22749377
Description:

DnaJ (Hsp40) homolog, subfamily C, member 18

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         23           2
 C cysteine            2.2          8           2
 D aspartate           5.6         20           2
 E glutamate           9.2         33           5
 F phenylalanine       3.9         14           2
 G glycine             5.3         19           2
 H histidine           2.0          7           1
 I isoleucine          4.5         16           2
 K lysine              8.1         29           2
 L leucine             8.1         29           2
 M methionine          0.8          3           1
 N asparagine          4.7         17           1
 P proline             4.5         16           2
 Q glutamine           4.7         17           2
 R arginine            6.7         24           3
 S serine              5.3         19           1
 T threonine           7.0         25           2
 V valine              3.6         13           1
 W tryptophan          0.8          3           1
 Y tyrosine            6.4         23           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DnaJ (Hsp40) homolog, subfamily C, member 18 
DNAJB14               0.431   DnaJ (Hsp40) homolog, subfamily B, member 14 isoform...
DNAJB12               0.352   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB12               0.352   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB1                0.097   DnaJ (Hsp40) homolog, subfamily B, member 1 
DNAJB4                0.092   DnaJ (Hsp40) homolog, subfamily B, member 4 
DNAJB5                0.092   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.092   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.092   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform ...
DNAJB6                0.085   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform ...
DNAJB6                0.085   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b...
DNAJA4                0.083   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJA4                0.083   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJC16               0.080   DnaJ (Hsp40) homolog, subfamily C, member 16 
DNAJB8                0.080   DnaJ homolog, subfamily B, member 8 
DNAJB13               0.077   testis spermatogenesis apoptosis-related protein 6 [...
DNAJB3                0.077   DnaJ (Hsp40) homolog, subfamily B, member 3 
DNAJA2                0.077   DnaJ subfamily A member 2 
DNAJA1                0.076   DnaJ (Hsp40) homolog, subfamily A, member 1 
DNAJB9                0.074   DnaJ (Hsp40) homolog, subfamily B, member 9 
DNAJA3                0.073   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJA3                0.073   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJC5B               0.073   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
DNAJC21               0.073   DnaJ homology subfamily A member 5 isoform 1 
DNAJC21               0.073   DnaJ homology subfamily A member 5 isoform 2 
DNAJB11               0.071   DnaJ (Hsp40) homolog, subfamily B, member 11 precurso...
DNAJC7                0.071   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.071   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJB2                0.069   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
DNAJB2                0.069   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press